Wall clock time and date at job start Mon Mar 30 2020 01:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00061 * 2 1 4 4 H 1.48503 * 109.47392 * 270.00123 * 3 2 1 5 5 H 1.48497 * 109.47405 * 30.00093 * 3 2 1 6 6 H 1.48496 * 109.47305 * 150.00138 * 3 2 1 7 7 C 1.37877 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00028 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00144 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47190 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47137 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47547 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47600 * 179.97438 * 12 11 10 14 14 O 1.20822 * 119.99923 * 359.97438 * 13 12 11 15 15 O 1.34235 * 119.99914 * 179.97438 * 13 12 11 16 16 C 1.45200 * 116.99629 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.46648 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.46762 * 179.97438 * 17 16 15 19 19 C 1.38654 * 120.78444 * 89.99979 * 18 17 16 20 20 C 1.38209 * 119.15786 * 179.97438 * 19 18 17 21 21 N 1.31870 * 120.76375 * 0.26353 * 20 19 18 22 22 C 1.31872 * 121.72489 * 359.46946 * 21 20 19 23 23 C 1.38200 * 120.76402 * 0.52682 * 22 21 20 24 24 H 0.97000 * 120.00079 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46707 * 59.99992 * 9 7 2 26 26 H 1.08993 * 109.47348 * 300.00007 * 9 7 2 27 27 H 1.09000 * 109.46966 * 60.00562 * 10 9 7 28 28 H 1.08993 * 109.47317 * 300.00438 * 10 9 7 29 29 H 1.08999 * 109.47377 * 60.00156 * 11 10 9 30 30 H 1.09005 * 109.47446 * 300.00674 * 11 10 9 31 31 H 1.08999 * 109.46824 * 59.99610 * 12 11 10 32 32 H 1.09005 * 109.47129 * 300.00661 * 12 11 10 33 33 H 1.08997 * 109.47133 * 60.00398 * 16 15 13 34 34 H 1.08996 * 109.46871 * 299.99547 * 16 15 13 35 35 H 1.08997 * 109.47090 * 60.00296 * 17 16 15 36 36 H 1.08991 * 109.47048 * 299.99837 * 17 16 15 37 37 H 1.07995 * 120.42251 * 0.02562 * 19 18 17 38 38 H 1.08002 * 119.61346 * 179.97438 * 20 19 18 39 39 H 1.08004 * 119.61160 * 180.27376 * 22 21 20 40 40 H 1.08004 * 120.41549 * 179.76941 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6366 -0.0009 12 6 6.0616 -4.0790 -0.0015 13 6 7.5686 -4.0790 -0.0020 14 8 8.1727 -3.0327 -0.0025 15 8 8.2397 -5.2415 -0.0020 16 6 9.6897 -5.1655 -0.0020 17 6 10.2745 -6.5794 -0.0027 18 6 11.7794 -6.5005 -0.0033 19 6 12.4886 -6.4636 1.1876 20 6 13.8683 -6.3918 1.1477 21 7 14.5087 -6.3532 -0.0043 22 6 13.8673 -6.3915 -1.1559 23 6 12.4877 -6.4634 -1.1946 24 1 -0.4850 0.8400 0.0004 25 1 3.8751 -0.6804 0.8889 26 1 3.8745 -0.6801 -0.8911 27 1 3.6579 -3.1505 -0.8908 28 1 3.6585 -3.1502 0.8891 29 1 5.9148 -2.1227 0.8890 30 1 5.9149 -2.1227 -0.8909 31 1 5.6982 -4.5925 -0.8916 32 1 5.6981 -4.5932 0.8883 33 1 10.0256 -4.6334 0.8880 34 1 10.0256 -4.6334 -0.8920 35 1 9.9385 -7.1111 -0.8929 36 1 9.9386 -7.1118 0.8870 37 1 11.9696 -6.4915 2.1342 38 1 14.4280 -6.3623 2.0709 39 1 14.4265 -6.3623 -2.0795 40 1 11.9679 -6.4907 -2.1409 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346019123.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:42 Heat of formation + Delta-G solvation = -82.041801 kcal Electronic energy + Delta-G solvation = -19614.032804 eV Core-core repulsion = 16392.856863 eV Total energy + Delta-G solvation = -3221.175941 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.78040 -40.41072 -37.07586 -35.15535 -34.86285 -32.66379 -31.67430 -30.70471 -29.93566 -26.42692 -24.68827 -23.94265 -22.53657 -21.86971 -20.54090 -20.11323 -17.77527 -17.19895 -16.91626 -16.60403 -16.58616 -16.33066 -16.04143 -15.15366 -14.44197 -14.26000 -14.21011 -13.90566 -13.61665 -13.23772 -12.78710 -12.71571 -12.33617 -12.30915 -12.13316 -11.83175 -11.78999 -11.19041 -10.82766 -10.81201 -10.60809 -10.57473 -10.08052 -9.95121 -9.89649 -9.70532 -9.62764 -9.55765 -9.16029 -8.52030 -6.02926 -4.00752 0.66143 0.70123 2.17263 2.48772 3.32979 3.34706 3.40296 3.45409 4.00871 4.12687 4.19785 4.47440 4.48420 4.59273 4.61048 4.68568 4.76439 4.94659 5.09340 5.14989 5.18107 5.20727 5.31648 5.33023 5.41324 5.51834 5.63683 5.84220 5.91609 6.01665 6.21661 6.26455 6.31960 6.58284 6.72397 6.92640 7.32836 7.45559 7.51059 7.69152 7.81646 8.55316 9.01927 9.60090 11.10472 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.047533 B = 0.002131 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.923960 B =13135.536757 C =13404.570023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.102 4.102 11 C -0.112 4.112 12 C -0.111 4.111 13 C 0.461 3.539 14 O -0.506 6.506 15 O -0.361 6.361 16 C 0.072 3.928 17 C -0.082 4.082 18 C -0.039 4.039 19 C -0.167 4.167 20 C 0.100 3.900 21 N -0.488 5.488 22 C 0.100 3.900 23 C -0.167 4.167 24 H 0.262 0.738 25 H 0.016 0.984 26 H 0.012 0.988 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.137 0.863 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.026 -16.482 0.020 30.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.090 0.910 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.149 4.149 12 C -0.149 4.149 13 C 0.304 3.696 14 O -0.393 6.393 15 O -0.279 6.279 16 C -0.002 4.002 17 C -0.119 4.119 18 C -0.048 4.048 19 C -0.186 4.186 20 C -0.056 4.056 21 N -0.197 5.197 22 C -0.056 4.056 23 C -0.186 4.186 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.030 0.970 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.155 0.845 38 H 0.175 0.825 39 H 0.175 0.825 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 27.001 -15.998 0.022 31.385 hybrid contribution -0.443 0.953 -0.023 1.051 sum 26.559 -15.045 -0.001 30.524 Atomic orbital electron populations 1.69917 1.06295 1.26853 1.51319 1.25045 0.94748 0.99231 0.94604 0.86771 0.80397 0.83568 0.78530 1.20315 1.21430 1.18953 1.21166 0.89584 0.94429 1.50661 0.91040 1.19578 0.97019 0.92318 0.96368 1.21474 0.91041 1.00174 1.01297 1.21611 0.97838 0.92297 1.03188 1.21592 0.85491 1.02022 1.05786 1.24215 0.92234 0.81188 0.71933 1.90676 1.70604 1.33001 1.44994 1.86498 1.21172 1.35713 1.84499 1.22889 0.77244 0.97026 1.03090 1.20538 0.89599 0.96422 1.05382 1.20083 0.95362 0.95899 0.93418 1.22141 0.95791 1.01851 0.98860 1.22815 0.91735 0.94709 0.96387 1.67698 1.41430 1.11921 0.98636 1.22814 0.91725 0.94709 0.96396 1.22136 0.95798 1.01853 0.98855 0.92785 0.96582 0.97012 0.92563 0.92540 0.91532 0.91544 0.87652 0.87645 0.91014 0.91022 0.89083 0.89078 0.84486 0.82544 0.82543 0.84486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.11 13.96 55.43 0.77 -27.33 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.52 -14.92 9.66 -34.44 -0.33 -15.26 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.02 -0.37 4.04 -27.88 -0.11 -0.48 16 10 C -0.10 -1.93 5.15 -26.73 -0.14 -2.07 16 11 C -0.11 -1.77 4.50 -26.74 -0.12 -1.89 16 12 C -0.11 -1.35 5.81 -27.89 -0.16 -1.51 16 13 C 0.46 6.07 7.96 36.01 0.29 6.35 16 14 O -0.51 -8.25 15.73 -18.75 -0.29 -8.55 16 15 O -0.36 -3.99 10.22 -39.27 -0.40 -4.39 16 16 C 0.07 0.65 5.45 37.16 0.20 0.85 16 17 C -0.08 -0.52 5.77 -27.88 -0.16 -0.68 16 18 C -0.04 -0.27 5.17 -104.32 -0.54 -0.81 16 19 C -0.17 -1.10 9.82 -39.44 -0.39 -1.48 16 20 C 0.10 0.73 11.18 -17.55 -0.20 0.53 16 21 N -0.49 -4.37 10.36 -13.25 -0.14 -4.51 16 22 C 0.10 0.73 11.18 -17.55 -0.20 0.53 16 23 C -0.17 -1.10 9.82 -39.45 -0.39 -1.48 16 24 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 25 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 26 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 30 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 31 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 0.68 8.13 -51.93 -0.42 0.25 16 34 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 35 H 0.09 0.51 8.10 -51.93 -0.42 0.09 16 36 H 0.09 0.51 8.10 -51.93 -0.42 0.09 16 37 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.16 0.75 8.06 -52.48 -0.42 0.33 16 40 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 LS Contribution 344.02 15.07 5.18 5.18 Total: -1.00 -34.23 344.02 -8.15 -42.38 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -6.26 Total: -4.61 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -2.34 Total: -15.60 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: 0.64 Total: -31.84 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.70 Total: -12.94 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.23 -8.15 -42.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346019123.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.664 kcal (2) G-P(sol) polarization free energy of solvation -34.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds