Wall clock time and date at job start Mon Mar 30 2020 01:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00061 * 2 1 4 4 H 1.48503 * 109.47392 * 270.00123 * 3 2 1 5 5 H 1.48497 * 109.47405 * 30.00093 * 3 2 1 6 6 H 1.48496 * 109.47305 * 150.00138 * 3 2 1 7 7 C 1.37877 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00028 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00144 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47190 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47137 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47547 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47600 * 179.97438 * 12 11 10 14 14 O 1.20822 * 119.99923 * 359.97438 * 13 12 11 15 15 O 1.34235 * 119.99914 * 179.97438 * 13 12 11 16 16 C 1.45200 * 116.99629 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.46648 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.46762 * 179.97438 * 17 16 15 19 19 C 1.38654 * 120.78444 * 89.99979 * 18 17 16 20 20 C 1.38209 * 119.15786 * 179.97438 * 19 18 17 21 21 N 1.31870 * 120.76375 * 0.26353 * 20 19 18 22 22 C 1.31872 * 121.72489 * 359.46946 * 21 20 19 23 23 C 1.38200 * 120.76402 * 0.52682 * 22 21 20 24 24 H 0.97000 * 120.00079 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46707 * 59.99992 * 9 7 2 26 26 H 1.08993 * 109.47348 * 300.00007 * 9 7 2 27 27 H 1.09000 * 109.46966 * 60.00562 * 10 9 7 28 28 H 1.08993 * 109.47317 * 300.00438 * 10 9 7 29 29 H 1.08999 * 109.47377 * 60.00156 * 11 10 9 30 30 H 1.09005 * 109.47446 * 300.00674 * 11 10 9 31 31 H 1.08999 * 109.46824 * 59.99610 * 12 11 10 32 32 H 1.09005 * 109.47129 * 300.00661 * 12 11 10 33 33 H 1.08997 * 109.47133 * 60.00398 * 16 15 13 34 34 H 1.08996 * 109.46871 * 299.99547 * 16 15 13 35 35 H 1.08997 * 109.47090 * 60.00296 * 17 16 15 36 36 H 1.08991 * 109.47048 * 299.99837 * 17 16 15 37 37 H 1.07995 * 120.42251 * 0.02562 * 19 18 17 38 38 H 1.08002 * 119.61346 * 179.97438 * 20 19 18 39 39 H 1.08004 * 119.61160 * 180.27376 * 22 21 20 40 40 H 1.08004 * 120.41549 * 179.76941 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6366 -0.0009 12 6 6.0616 -4.0790 -0.0015 13 6 7.5686 -4.0790 -0.0020 14 8 8.1727 -3.0327 -0.0025 15 8 8.2397 -5.2415 -0.0020 16 6 9.6897 -5.1655 -0.0020 17 6 10.2745 -6.5794 -0.0027 18 6 11.7794 -6.5005 -0.0033 19 6 12.4886 -6.4636 1.1876 20 6 13.8683 -6.3918 1.1477 21 7 14.5087 -6.3532 -0.0043 22 6 13.8673 -6.3915 -1.1559 23 6 12.4877 -6.4634 -1.1946 24 1 -0.4850 0.8400 0.0004 25 1 3.8751 -0.6804 0.8889 26 1 3.8745 -0.6801 -0.8911 27 1 3.6579 -3.1505 -0.8908 28 1 3.6585 -3.1502 0.8891 29 1 5.9148 -2.1227 0.8890 30 1 5.9149 -2.1227 -0.8909 31 1 5.6982 -4.5925 -0.8916 32 1 5.6981 -4.5932 0.8883 33 1 10.0256 -4.6334 0.8880 34 1 10.0256 -4.6334 -0.8920 35 1 9.9385 -7.1111 -0.8929 36 1 9.9386 -7.1118 0.8870 37 1 11.9696 -6.4915 2.1342 38 1 14.4280 -6.3623 2.0709 39 1 14.4265 -6.3623 -2.0795 40 1 11.9679 -6.4907 -2.1409 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346019123.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:42 Heat of formation + Delta-G solvation = -101.601151 kcal Electronic energy + Delta-G solvation = -19614.880961 eV Core-core repulsion = 16392.856863 eV Total energy + Delta-G solvation = -3222.024098 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.60932 -41.06558 -38.03074 -36.66754 -35.46864 -34.63828 -32.15142 -32.12602 -30.81638 -27.96837 -25.55188 -24.43064 -23.96890 -22.43119 -21.92625 -21.47712 -18.91382 -18.62468 -17.97227 -17.45312 -17.28456 -17.26428 -16.49286 -16.31095 -16.27200 -15.14115 -15.09581 -14.78255 -14.53747 -14.37679 -13.99059 -13.93640 -13.66320 -13.51711 -13.11205 -12.89347 -12.86017 -12.39980 -12.35830 -12.12217 -11.75941 -11.71882 -11.58264 -11.38114 -11.32236 -11.23725 -10.75319 -10.60971 -10.47220 -10.11345 -8.28805 -6.31936 0.17668 0.17948 1.17215 1.35566 1.37176 1.49494 1.62978 2.36421 2.82663 3.06662 3.50307 3.59675 3.71287 3.81586 3.92741 4.03015 4.03056 4.11009 4.15133 4.21638 4.29300 4.52173 4.61606 4.67320 4.69530 4.75820 4.81025 4.89272 4.90122 5.02688 5.10495 5.18413 5.22572 5.35593 5.40783 5.60499 5.65626 5.69228 5.75595 6.30327 6.71668 6.76563 7.00572 7.32822 8.87691 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.047533 B = 0.002131 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.923960 B =13135.536757 C =13404.570023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.002 3.998 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.250 1.250 7 C -0.530 4.530 8 H 0.037 0.963 9 C -0.018 4.018 10 C -0.095 4.095 11 C -0.103 4.103 12 C -0.105 4.105 13 C 0.466 3.534 14 O -0.543 6.543 15 O -0.354 6.354 16 C 0.069 3.931 17 C -0.071 4.071 18 C -0.049 4.049 19 C -0.169 4.169 20 C 0.086 3.914 21 N -0.518 5.518 22 C 0.086 3.914 23 C -0.169 4.169 24 H 0.266 0.734 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.156 0.844 38 H 0.174 0.826 39 H 0.174 0.826 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.489 -17.033 -0.003 32.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.772 3.228 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.174 1.174 7 C -0.568 4.568 8 H 0.056 0.944 9 C -0.055 4.055 10 C -0.132 4.132 11 C -0.140 4.140 12 C -0.143 4.143 13 C 0.312 3.688 14 O -0.433 6.433 15 O -0.271 6.271 16 C -0.005 4.005 17 C -0.108 4.108 18 C -0.057 4.057 19 C -0.189 4.189 20 C -0.070 4.070 21 N -0.228 5.228 22 C -0.070 4.070 23 C -0.189 4.189 24 H 0.074 0.926 25 H 0.034 0.966 26 H 0.033 0.967 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.173 0.827 38 H 0.191 0.809 39 H 0.191 0.809 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 28.479 -16.586 -0.001 32.957 hybrid contribution -0.920 1.036 -0.017 1.385 sum 27.559 -15.550 -0.018 31.644 Atomic orbital electron populations 1.70063 1.08154 1.28053 1.52893 1.26013 0.95630 1.03461 0.94363 0.85683 0.79416 0.78565 0.79143 1.19260 1.20923 1.17417 1.21552 0.92186 0.93193 1.49901 0.94449 1.19583 0.93837 0.95847 0.96258 1.21329 0.93261 0.96877 1.01742 1.21393 0.95288 0.94906 1.02453 1.21508 0.84950 0.99746 1.08048 1.24304 0.92571 0.81072 0.70896 1.90672 1.71387 1.34319 1.46928 1.86482 1.22294 1.34473 1.83873 1.23062 0.76041 0.98792 1.02631 1.20475 0.89018 0.94744 1.06545 1.20234 0.95637 0.96140 0.93709 1.22384 0.95672 1.01141 0.99698 1.23182 0.92426 0.94715 0.96704 1.67697 1.42537 1.12983 0.99570 1.23181 0.92415 0.94715 0.96715 1.22380 0.95680 1.01142 0.99692 0.92564 0.96634 0.96728 0.92137 0.92166 0.92375 0.92307 0.85362 0.85375 0.91552 0.91557 0.87953 0.87948 0.82679 0.80856 0.80855 0.82678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.05 13.96 21.45 0.30 -59.76 16 2 C 0.00 0.11 5.47 84.65 0.46 0.58 16 3 Si 0.95 45.22 27.47 68.60 1.88 47.11 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.25 -11.26 6.54 99.48 0.65 -10.61 16 7 C -0.53 -30.70 9.66 25.60 0.25 -30.45 16 8 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 9 C -0.02 -0.84 4.04 29.85 0.12 -0.72 16 10 C -0.09 -3.43 5.15 30.59 0.16 -3.28 16 11 C -0.10 -3.05 4.50 30.59 0.14 -2.91 16 12 C -0.11 -2.25 5.81 29.85 0.17 -2.08 16 13 C 0.47 11.28 7.96 71.24 0.57 11.84 16 14 O -0.54 -17.04 15.73 21.98 0.35 -16.70 16 15 O -0.35 -6.95 10.22 -51.47 -0.53 -7.48 16 16 C 0.07 1.12 5.45 71.98 0.39 1.51 16 17 C -0.07 -0.73 5.77 29.85 0.17 -0.56 16 18 C -0.05 -0.59 5.17 -19.67 -0.10 -0.69 16 19 C -0.17 -1.98 9.82 22.36 0.22 -1.76 16 20 C 0.09 1.18 11.18 84.68 0.95 2.12 16 21 N -0.52 -9.02 10.36 -195.84 -2.03 -11.05 16 22 C 0.09 1.18 11.18 84.68 0.95 2.12 16 23 C -0.17 -1.97 9.82 22.36 0.22 -1.76 16 24 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 25 H 0.02 0.72 7.20 -2.39 -0.02 0.71 16 26 H 0.01 0.67 7.57 -2.39 -0.02 0.65 16 27 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 29 H 0.06 1.82 8.10 -2.39 -0.02 1.80 16 30 H 0.06 1.83 8.10 -2.38 -0.02 1.81 16 31 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.13 2.21 8.14 -2.38 -0.02 2.20 16 33 H 0.07 1.16 8.13 -2.39 -0.02 1.14 16 34 H 0.07 1.16 8.13 -2.39 -0.02 1.14 16 35 H 0.10 0.85 8.10 -2.39 -0.02 0.83 16 36 H 0.10 0.85 8.10 -2.39 -0.02 0.83 16 37 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 38 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 39 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 40 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -74.25 344.02 5.58 -68.67 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 0.95 Total: 5.22 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: 4.66 Total: -26.02 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: -1.73 Total: -70.80 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.18 Total: -24.18 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.88 Total: 47.11 kcal Total: -74.25 5.58 -68.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346019123.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.935 kcal (2) G-P(sol) polarization free energy of solvation -74.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds