Wall clock time and date at job start Mon Mar 30 2020 01:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00189 * 2 1 4 4 H 1.48506 * 109.47153 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47001 * 300.00038 * 3 2 1 6 6 H 1.48491 * 109.47428 * 60.00137 * 3 2 1 7 7 C 1.37880 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99944 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99980 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46880 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.46829 * 179.97438 * 10 9 7 12 12 N 1.46492 * 109.46894 * 179.97438 * 11 10 9 13 13 C 1.34779 * 119.99953 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99859 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00088 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.46983 * 179.97438 * 15 13 12 17 17 C 1.50707 * 109.46986 * 179.97438 * 16 15 13 18 18 C 1.38289 * 119.96926 * 270.01927 * 17 16 15 19 19 C 1.38240 * 120.11036 * 180.02562 * 18 17 16 20 20 C 1.38173 * 120.05812 * 359.67646 * 19 18 17 21 21 C 1.38709 * 119.93675 * 0.57760 * 20 19 18 22 22 O 1.35905 * 120.05346 * 179.72475 * 21 20 19 23 23 C 1.38116 * 119.97322 * 89.99956 * 17 16 15 24 24 H 0.96999 * 119.99516 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.46913 * 60.00413 * 9 7 2 26 26 H 1.09007 * 109.46873 * 300.00211 * 9 7 2 27 27 H 1.08997 * 109.47449 * 60.00204 * 10 9 7 28 28 H 1.09000 * 109.46749 * 299.99680 * 10 9 7 29 29 H 1.08997 * 109.46838 * 59.99952 * 11 10 9 30 30 H 1.09002 * 109.46999 * 300.00188 * 11 10 9 31 31 H 0.96999 * 120.00470 * 0.02562 * 12 11 10 32 32 H 1.09002 * 109.47472 * 59.99277 * 15 13 12 33 33 H 1.09007 * 109.46797 * 299.99211 * 15 13 12 34 34 H 1.09002 * 109.47572 * 59.99381 * 16 15 13 35 35 H 1.09000 * 109.47040 * 299.99035 * 16 15 13 36 36 H 1.08001 * 119.94341 * 0.02562 * 18 17 16 37 37 H 1.08006 * 119.97312 * 179.97438 * 19 18 17 38 38 H 1.07996 * 120.03009 * 180.29712 * 20 19 18 39 39 H 0.96705 * 113.99576 * 269.72355 * 22 21 20 40 40 H 1.08003 * 120.03068 * 0.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4801 -4.9872 0.0001 12 7 2.4320 -6.1007 -0.0005 13 6 1.9827 -7.3714 -0.0006 14 8 0.7903 -7.5929 0.0003 15 6 2.9619 -8.5168 -0.0007 16 6 2.1969 -9.8418 -0.0001 17 6 3.1762 -10.9873 -0.0008 18 6 3.6245 -11.5121 -1.1991 19 6 4.5224 -12.5632 -1.2032 20 6 4.9793 -13.0878 -0.0093 21 6 4.5270 -12.5665 1.1939 22 8 4.9705 -13.0843 2.3696 23 6 3.6254 -11.5118 1.1953 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8718 -3.6045 0.8894 28 1 2.8718 -3.6044 -0.8906 29 1 0.8531 -5.0451 -0.8896 30 1 0.8537 -5.0446 0.8903 31 1 3.3857 -5.9235 -0.0008 32 1 3.5887 -8.4592 0.8893 33 1 3.5886 -8.4591 -0.8908 34 1 1.5698 -9.8997 -0.8899 35 1 1.5706 -9.8993 0.8901 36 1 3.2726 -11.1001 -2.1334 37 1 4.8708 -12.9717 -2.1404 38 1 5.6844 -13.9057 -0.0130 39 1 4.4273 -13.8083 2.7103 40 1 3.2749 -11.1017 2.1309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527658336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:55 Heat of formation + Delta-G solvation = -110.508346 kcal Electronic energy + Delta-G solvation = -19686.377080 eV Core-core repulsion = 16463.966737 eV Total energy + Delta-G solvation = -3222.410343 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.98071 -40.44652 -37.89724 -36.98229 -35.18601 -34.71818 -33.04537 -31.15084 -30.39836 -28.57458 -26.01906 -24.47112 -23.49404 -22.31101 -22.15157 -21.04971 -18.98914 -18.56490 -17.88532 -17.25982 -17.10180 -16.83288 -16.57689 -16.40792 -16.00824 -15.71074 -15.04748 -14.65121 -14.28467 -14.19965 -13.96265 -13.71296 -13.59999 -13.42530 -12.86386 -12.76649 -12.71254 -12.55538 -12.43150 -12.34055 -11.91630 -11.68419 -11.59909 -11.37663 -11.23180 -10.83495 -10.56979 -10.07806 -9.78234 -9.50973 -8.20400 -6.31884 0.30694 0.38463 1.41501 1.41540 1.54909 1.66158 2.24013 2.42410 2.71456 3.13348 3.31217 3.67370 3.94646 4.00700 4.13535 4.18102 4.22051 4.25400 4.31998 4.46268 4.55001 4.59671 4.67041 4.83640 4.94097 5.01359 5.01487 5.08540 5.16319 5.20221 5.45719 5.48301 5.49977 5.53326 5.66761 5.69835 5.83517 5.93997 6.21447 6.60539 6.85992 6.86638 7.28998 7.37812 8.91923 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040503 B = 0.002159 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.142313 B =12967.299638 C =13127.139490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.006 4.006 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.022 3.978 10 C -0.102 4.102 11 C 0.129 3.871 12 N -0.717 5.717 13 C 0.504 3.496 14 O -0.592 6.592 15 C -0.122 4.122 16 C -0.061 4.061 17 C -0.068 4.068 18 C -0.132 4.132 19 C -0.101 4.101 20 C -0.158 4.158 21 C 0.096 3.904 22 O -0.514 6.514 23 C -0.155 4.155 24 H 0.263 0.737 25 H -0.008 1.008 26 H -0.009 1.009 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.416 0.584 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.139 0.861 37 H 0.150 0.850 38 H 0.140 0.860 39 H 0.409 0.591 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.283 -27.847 -0.578 30.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.182 1.182 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.016 4.016 10 C -0.140 4.140 11 C 0.004 3.996 12 N -0.369 5.369 13 C 0.293 3.707 14 O -0.472 6.472 15 C -0.162 4.162 16 C -0.099 4.099 17 C -0.068 4.068 18 C -0.150 4.150 19 C -0.119 4.119 20 C -0.177 4.177 21 C 0.052 3.948 22 O -0.327 6.327 23 C -0.174 4.174 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.253 0.747 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.157 0.843 37 H 0.167 0.833 38 H 0.158 0.842 39 H 0.268 0.732 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.744 -27.472 -0.624 29.884 hybrid contribution -0.234 0.857 0.252 0.923 sum 11.510 -26.615 -0.372 29.000 Atomic orbital electron populations 1.70122 1.07948 1.27736 1.51763 1.26051 0.95784 1.03642 0.94823 0.85345 0.79187 0.78556 0.77620 1.18176 1.20565 1.20588 1.21712 0.93753 0.91992 1.50302 0.91517 1.18963 0.94491 0.93085 0.95026 1.21595 0.98396 0.91846 1.02115 1.21208 0.92080 0.85783 1.00496 1.46046 1.11170 1.05234 1.74480 1.21413 0.89809 0.84788 0.74713 1.90688 1.19314 1.85477 1.51768 1.21648 0.97390 0.90412 1.06750 1.20260 0.95604 0.90213 1.03855 1.19752 0.97260 0.96719 0.93054 1.21358 0.98305 0.97279 0.98035 1.21335 0.96242 0.95760 0.98539 1.21663 1.02034 1.02043 0.91927 1.18617 0.95232 0.95137 0.85830 1.84775 1.55889 1.55684 1.36346 1.21457 0.98576 0.98534 0.98795 0.92814 0.98969 0.99043 0.91414 0.91308 0.93354 0.93471 0.74687 0.86911 0.86284 0.90616 0.91298 0.84331 0.83259 0.84187 0.73226 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.32 13.29 21.45 0.28 -57.03 16 2 C -0.01 -0.32 5.46 84.66 0.46 0.15 16 3 Si 0.97 43.86 29.54 68.60 2.03 45.89 16 4 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.54 -30.16 9.11 25.60 0.23 -29.93 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.02 1.15 4.97 29.85 0.15 1.30 16 10 C -0.10 -3.90 5.27 30.60 0.16 -3.74 16 11 C 0.13 4.53 5.67 86.38 0.49 5.02 16 12 N -0.72 -19.02 5.56 -463.06 -2.57 -21.60 16 13 C 0.50 13.65 7.83 87.66 0.69 14.34 16 14 O -0.59 -21.64 15.98 -3.03 -0.05 -21.69 16 15 C -0.12 -2.10 5.68 29.85 0.17 -1.93 16 16 C -0.06 -1.13 4.63 29.85 0.14 -0.99 16 17 C -0.07 -1.10 5.13 -19.88 -0.10 -1.20 16 18 C -0.13 -1.83 9.70 22.28 0.22 -1.62 16 19 C -0.10 -1.22 10.04 22.25 0.22 -1.00 16 20 C -0.16 -2.14 9.99 22.37 0.22 -1.92 16 21 C 0.10 1.53 6.70 22.51 0.15 1.68 16 22 O -0.51 -7.35 13.50 -92.48 -1.25 -8.60 16 23 C -0.16 -2.59 9.64 22.36 0.22 -2.38 16 24 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 25 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 26 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 27 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.07 2.45 8.14 -2.39 -0.02 2.44 16 29 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.42 8.13 8.47 -92.71 -0.79 7.34 16 32 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.12 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.08 1.50 8.04 -2.39 -0.02 1.48 16 35 H 0.07 1.44 8.04 -2.39 -0.02 1.42 16 36 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 38 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 39 H 0.41 1.92 9.06 -74.05 -0.67 1.25 16 40 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -74.61 346.05 1.44 -73.17 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -0.42 Total: 12.08 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: 3.42 Total: -22.23 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -2.29 Total: -78.63 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -1.30 Total: -30.29 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -74.61 1.44 -73.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527658336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.336 kcal (2) G-P(sol) polarization free energy of solvation -74.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds