Wall clock time and date at job start Mon Mar 30 2020 02:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38258 * 120.00460 * 2 1 4 4 C 1.38201 * 120.00189 * 179.97438 * 3 2 1 5 5 C 1.38261 * 120.00072 * 359.74401 * 4 3 2 6 6 C 1.38214 * 119.99557 * 0.50252 * 5 4 3 7 7 C 1.50702 * 119.99724 * 179.76815 * 6 5 4 8 8 H 1.09003 * 109.47294 * 199.72870 * 7 6 5 9 9 N 1.46905 * 109.47206 * 319.73151 * 7 6 5 10 10 C 1.46901 * 110.99870 * 205.00135 * 9 7 6 11 11 C 1.53004 * 109.46916 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46700 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46820 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00070 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00019 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00228 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00068 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46685 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46910 * 120.00333 * 17 15 13 20 20 H 1.48502 * 109.47120 * 240.00671 * 17 15 13 21 21 C 1.50702 * 109.47188 * 79.72941 * 7 6 5 22 22 O 1.20819 * 120.00031 * 239.99992 * 21 7 6 23 23 O 1.34231 * 119.99421 * 59.99847 * 21 7 6 24 24 C 1.38212 * 119.99592 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.46945 * 270.02692 * 1 2 3 26 26 H 1.09001 * 109.46543 * 30.02265 * 1 2 3 27 27 H 1.08993 * 109.47148 * 150.02455 * 1 2 3 28 28 H 1.07998 * 119.99671 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.00148 * 180.02562 * 4 3 2 30 30 H 1.08005 * 120.00256 * 180.27926 * 5 4 3 31 31 H 1.00901 * 110.99869 * 81.04847 * 9 7 6 32 32 H 1.09004 * 109.47031 * 299.99620 * 10 9 7 33 33 H 1.08995 * 109.47111 * 59.99900 * 10 9 7 34 34 H 1.08995 * 109.46615 * 299.99641 * 11 10 9 35 35 H 1.08996 * 109.46939 * 60.00272 * 11 10 9 36 36 H 1.08993 * 109.47740 * 299.99810 * 12 11 10 37 37 H 1.09005 * 109.47573 * 59.99976 * 12 11 10 38 38 H 0.97002 * 120.00555 * 179.97438 * 16 15 13 39 39 H 0.96702 * 116.99602 * 179.97438 * 23 21 7 40 40 H 1.08004 * 120.00099 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0002 0.0064 6 6 3.5805 -1.1971 0.0013 7 6 4.3340 -2.5022 0.0024 8 1 3.6794 -3.3000 -0.3488 9 7 5.4980 -2.3964 -0.8875 10 6 5.9036 -3.7185 -1.3832 11 6 7.1163 -3.5679 -2.3039 12 6 7.5390 -4.9449 -2.8196 13 6 8.7331 -4.7965 -3.7270 14 1 9.1491 -3.8180 -3.9164 15 6 9.2951 -5.9101 -4.3144 16 7 8.7889 -7.1017 -4.0833 17 14 10.7757 -5.7263 -5.4386 18 1 11.1500 -4.2924 -5.5335 19 1 11.9163 -6.4997 -4.8852 20 1 10.4380 -6.2408 -6.7901 21 6 4.7983 -2.8130 1.4020 22 8 5.9777 -2.9340 1.6344 23 8 3.9013 -2.9554 2.3905 24 6 2.1980 -1.1970 0.0005 25 1 -0.3633 0.0005 1.0277 26 1 -0.3632 0.8898 -0.5142 27 1 -0.3633 -0.8901 -0.5134 28 1 1.6584 2.1326 -0.0004 29 1 4.1205 2.1325 0.0010 30 1 5.3517 -0.0002 0.0114 31 1 6.2656 -1.9325 -0.4251 32 1 6.1651 -4.3581 -0.5401 33 1 5.0794 -4.1671 -1.9377 34 1 6.8552 -2.9282 -3.1468 35 1 7.9403 -3.1195 -1.7489 36 1 7.8002 -5.5843 -1.9765 37 1 6.7151 -5.3938 -3.3744 38 1 9.1840 -7.8852 -4.4969 39 1 4.2468 -3.1548 3.2714 40 1 1.6579 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594397556.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:46 Heat of formation + Delta-G solvation = -85.450835 kcal Electronic energy + Delta-G solvation = -20734.373770 eV Core-core repulsion = 17513.050002 eV Total energy + Delta-G solvation = -3221.323768 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.78629 -39.31134 -36.86935 -35.85066 -33.98227 -32.77093 -32.00865 -30.46076 -27.55826 -26.98981 -25.40351 -22.98719 -22.21251 -22.03785 -20.46196 -19.93338 -18.20971 -17.21226 -16.89102 -16.26479 -15.98624 -15.47110 -15.00938 -14.53887 -14.42167 -14.12911 -13.89418 -13.83052 -13.34554 -13.13939 -12.59204 -12.34201 -12.25919 -12.06017 -11.84186 -11.66882 -11.55247 -11.24330 -11.10231 -10.91176 -10.80059 -10.58722 -10.46610 -9.70608 -9.36166 -9.04413 -8.92906 -8.71771 -8.53948 -8.31710 -5.96806 -3.98599 1.15231 1.27918 2.04990 2.90102 3.33754 3.40900 3.45726 3.60914 4.17556 4.48845 4.52613 4.65984 4.73659 4.99826 5.00754 5.11579 5.17000 5.35365 5.38708 5.39217 5.52228 5.61849 5.71758 5.83981 5.86952 5.97935 6.27491 6.32848 6.34786 6.38757 6.44377 6.65146 6.71856 6.86329 7.09940 7.15625 7.37953 7.71450 7.73261 7.85957 8.03602 8.46769 9.08641 9.65259 11.14766 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024445 B = 0.003202 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.161554 B = 8743.164638 C = 9180.006334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.118 4.118 4 C -0.118 4.118 5 C -0.098 4.098 6 C -0.065 4.065 7 C 0.136 3.864 8 H 0.124 0.876 9 N -0.653 5.653 10 C 0.052 3.948 11 C -0.105 4.105 12 C 0.022 3.978 13 C -0.517 4.517 14 H 0.056 0.944 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.454 3.546 22 O -0.509 6.509 23 O -0.513 6.513 24 C -0.099 4.099 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.352 0.648 32 H 0.033 0.967 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.014 0.986 37 H 0.016 0.984 38 H 0.259 0.741 39 H 0.405 0.595 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.007 14.444 12.355 25.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.137 4.137 4 C -0.136 4.136 5 C -0.116 4.116 6 C -0.066 4.066 7 C 0.023 3.977 8 H 0.141 0.859 9 N -0.286 5.286 10 C -0.076 4.076 11 C -0.143 4.143 12 C -0.015 4.015 13 C -0.555 4.555 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 C 0.293 3.707 22 O -0.396 6.396 23 O -0.324 6.324 24 C -0.117 4.117 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.173 0.827 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.033 0.967 37 H 0.035 0.965 38 H 0.069 0.931 39 H 0.263 0.737 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.162 14.454 11.422 25.178 hybrid contribution 1.600 -0.613 0.773 1.879 sum -15.563 13.841 12.195 24.135 Atomic orbital electron populations 1.20776 0.91153 1.02808 1.02226 1.19839 0.96026 0.92970 1.00185 1.21035 0.94270 0.97444 1.00903 1.21100 0.94256 0.97912 1.00324 1.20968 1.00180 0.91741 0.98740 1.19276 0.93214 0.92941 1.01125 1.20337 0.95792 0.97332 0.84199 0.85869 1.61057 1.08951 1.22510 1.36040 1.22324 0.99676 0.87455 0.98109 1.21604 0.93976 1.01356 0.97383 1.19065 0.96239 0.90353 0.95883 1.21289 1.13482 0.93172 1.27594 0.92575 1.25034 0.97353 0.95359 0.96829 1.69977 1.41212 0.98047 1.44409 0.86535 0.82766 0.78175 0.80532 1.19704 1.21074 1.21024 1.24956 0.84554 0.72255 0.88894 1.90757 1.18736 1.46558 1.83535 1.84591 1.43288 1.82765 1.21722 1.20845 0.92940 0.97916 1.00038 0.91275 0.91625 0.91445 0.86224 0.85957 0.85919 0.82724 0.94850 0.90996 0.92361 0.93373 0.96736 0.96521 0.93112 0.73657 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.01 36.01 0.36 -0.41 16 2 C -0.09 -0.85 5.88 -104.62 -0.62 -1.47 16 3 C -0.12 -1.10 9.70 -39.59 -0.38 -1.48 16 4 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 5 C -0.10 -1.13 9.32 -39.58 -0.37 -1.50 16 6 C -0.06 -0.76 4.88 -104.62 -0.51 -1.27 16 7 C 0.14 1.73 2.70 -70.01 -0.19 1.54 16 8 H 0.12 1.43 7.66 -51.93 -0.40 1.03 16 9 N -0.65 -9.81 5.56 -109.18 -0.61 -10.41 16 10 C 0.05 0.93 5.38 -3.82 -0.02 0.91 16 11 C -0.11 -2.24 5.41 -26.73 -0.14 -2.38 16 12 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 13 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.45 13.29 55.43 0.74 -26.72 16 17 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 C 0.45 5.95 7.43 36.01 0.27 6.21 16 22 O -0.51 -8.28 16.06 -18.74 -0.30 -8.59 16 23 O -0.51 -5.19 13.34 -39.26 -0.52 -5.71 16 24 C -0.10 -1.03 9.32 -39.59 -0.37 -1.40 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 27 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 28 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 29 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.12 1.41 7.26 -52.48 -0.38 1.03 16 31 H 0.35 5.37 7.10 -39.29 -0.28 5.09 16 32 H 0.03 0.62 7.62 -51.93 -0.40 0.23 16 33 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.41 2.48 9.10 45.56 0.41 2.90 16 40 H 0.12 1.10 8.04 -52.48 -0.42 0.68 16 LS Contribution 342.62 15.07 5.16 5.16 Total: -1.00 -33.56 342.62 -8.69 -42.25 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -5.22 Total: 3.14 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -2.92 Total: -16.19 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.13 Total: -37.13 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.82 Total: -14.30 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.56 -8.69 -42.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594397556.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.200 kcal (2) G-P(sol) polarization free energy of solvation -33.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds