Wall clock time and date at job start Mon Mar 30 2020 02:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38258 * 120.00460 * 2 1 4 4 C 1.38201 * 120.00189 * 179.97438 * 3 2 1 5 5 C 1.38261 * 120.00072 * 359.74401 * 4 3 2 6 6 C 1.38214 * 119.99557 * 0.50252 * 5 4 3 7 7 C 1.50702 * 119.99724 * 179.76815 * 6 5 4 8 8 H 1.09003 * 109.47294 * 199.72870 * 7 6 5 9 9 N 1.46905 * 109.47206 * 319.73151 * 7 6 5 10 10 C 1.46901 * 110.99870 * 205.00135 * 9 7 6 11 11 C 1.53004 * 109.46916 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46700 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46820 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00070 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00019 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00228 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00068 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46685 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46910 * 120.00333 * 17 15 13 20 20 H 1.48502 * 109.47120 * 240.00671 * 17 15 13 21 21 C 1.50702 * 109.47188 * 79.72941 * 7 6 5 22 22 O 1.20819 * 120.00031 * 239.99992 * 21 7 6 23 23 O 1.34231 * 119.99421 * 59.99847 * 21 7 6 24 24 C 1.38212 * 119.99592 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.46945 * 270.02692 * 1 2 3 26 26 H 1.09001 * 109.46543 * 30.02265 * 1 2 3 27 27 H 1.08993 * 109.47148 * 150.02455 * 1 2 3 28 28 H 1.07998 * 119.99671 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.00148 * 180.02562 * 4 3 2 30 30 H 1.08005 * 120.00256 * 180.27926 * 5 4 3 31 31 H 1.00901 * 110.99869 * 81.04847 * 9 7 6 32 32 H 1.09004 * 109.47031 * 299.99620 * 10 9 7 33 33 H 1.08995 * 109.47111 * 59.99900 * 10 9 7 34 34 H 1.08995 * 109.46615 * 299.99641 * 11 10 9 35 35 H 1.08996 * 109.46939 * 60.00272 * 11 10 9 36 36 H 1.08993 * 109.47740 * 299.99810 * 12 11 10 37 37 H 1.09005 * 109.47573 * 59.99976 * 12 11 10 38 38 H 0.97002 * 120.00555 * 179.97438 * 16 15 13 39 39 H 0.96702 * 116.99602 * 179.97438 * 23 21 7 40 40 H 1.08004 * 120.00099 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0002 0.0064 6 6 3.5805 -1.1971 0.0013 7 6 4.3340 -2.5022 0.0024 8 1 3.6794 -3.3000 -0.3488 9 7 5.4980 -2.3964 -0.8875 10 6 5.9036 -3.7185 -1.3832 11 6 7.1163 -3.5679 -2.3039 12 6 7.5390 -4.9449 -2.8196 13 6 8.7331 -4.7965 -3.7270 14 1 9.1491 -3.8180 -3.9164 15 6 9.2951 -5.9101 -4.3144 16 7 8.7889 -7.1017 -4.0833 17 14 10.7757 -5.7263 -5.4386 18 1 11.1500 -4.2924 -5.5335 19 1 11.9163 -6.4997 -4.8852 20 1 10.4380 -6.2408 -6.7901 21 6 4.7983 -2.8130 1.4020 22 8 5.9777 -2.9340 1.6344 23 8 3.9013 -2.9554 2.3905 24 6 2.1980 -1.1970 0.0005 25 1 -0.3633 0.0005 1.0277 26 1 -0.3632 0.8898 -0.5142 27 1 -0.3633 -0.8901 -0.5134 28 1 1.6584 2.1326 -0.0004 29 1 4.1205 2.1325 0.0010 30 1 5.3517 -0.0002 0.0114 31 1 6.2656 -1.9325 -0.4251 32 1 6.1651 -4.3581 -0.5401 33 1 5.0794 -4.1671 -1.9377 34 1 6.8552 -2.9282 -3.1468 35 1 7.9403 -3.1195 -1.7489 36 1 7.8002 -5.5843 -1.9765 37 1 6.7151 -5.3938 -3.3744 38 1 9.1840 -7.8852 -4.4969 39 1 4.2468 -3.1548 3.2714 40 1 1.6579 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594397556.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:46 Heat of formation + Delta-G solvation = -106.903564 kcal Electronic energy + Delta-G solvation = -20735.304030 eV Core-core repulsion = 17513.050002 eV Total energy + Delta-G solvation = -3222.254028 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.79880 -40.12005 -38.00874 -37.00844 -35.69919 -34.11087 -33.11254 -31.84966 -28.93079 -27.66726 -27.02792 -24.44600 -23.40491 -22.88899 -22.01415 -21.05049 -19.21115 -18.56647 -18.24484 -17.66970 -16.97743 -16.58458 -16.27492 -16.18263 -15.66588 -15.22573 -15.09343 -14.55140 -14.37577 -14.24531 -13.92529 -13.62406 -13.52209 -13.28706 -12.91579 -12.84041 -12.79069 -12.67360 -12.49792 -12.38502 -12.07136 -11.89003 -11.82973 -11.59227 -11.42136 -11.13385 -10.56702 -9.84404 -9.68074 -9.48151 -8.21036 -6.31948 0.35512 0.51758 1.02545 1.39518 1.39931 1.53730 1.98797 2.40419 2.74193 3.10217 3.12134 3.58931 3.83039 4.05161 4.13533 4.19879 4.22063 4.28996 4.33166 4.55467 4.60363 4.66345 4.83004 4.91233 4.91826 4.98392 5.01474 5.16004 5.20244 5.35368 5.44063 5.48604 5.57053 5.58985 5.71964 5.72307 5.80005 5.84446 6.09159 6.13360 6.24863 6.83406 6.84703 7.37190 8.91244 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024445 B = 0.003202 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.161554 B = 8743.164638 C = 9180.006334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.121 4.121 4 C -0.124 4.124 5 C -0.118 4.118 6 C -0.078 4.078 7 C 0.136 3.864 8 H 0.135 0.865 9 N -0.651 5.651 10 C 0.067 3.933 11 C -0.091 4.091 12 C 0.026 3.974 13 C -0.543 4.543 14 H 0.059 0.941 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.262 1.262 19 H -0.278 1.278 20 H -0.276 1.276 21 C 0.461 3.539 22 O -0.547 6.547 23 O -0.502 6.502 24 C -0.108 4.108 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.144 0.856 29 H 0.139 0.861 30 H 0.114 0.886 31 H 0.350 0.650 32 H 0.020 0.980 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.045 0.955 36 H -0.013 1.013 37 H -0.003 1.003 38 H 0.264 0.736 39 H 0.424 0.576 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.107 15.921 12.290 27.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.094 4.094 3 C -0.138 4.138 4 C -0.142 4.142 5 C -0.137 4.137 6 C -0.078 4.078 7 C 0.024 3.976 8 H 0.153 0.847 9 N -0.282 5.282 10 C -0.062 4.062 11 C -0.129 4.129 12 C -0.011 4.011 13 C -0.581 4.581 14 H 0.077 0.923 15 C -0.200 4.200 16 N -0.574 5.574 17 Si 0.791 3.209 18 H -0.186 1.186 19 H -0.204 1.204 20 H -0.201 1.201 21 C 0.302 3.698 22 O -0.437 6.437 23 O -0.314 6.314 24 C -0.126 4.126 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.162 0.838 29 H 0.157 0.843 30 H 0.132 0.868 31 H 0.170 0.830 32 H 0.038 0.962 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.006 0.994 37 H 0.015 0.985 38 H 0.073 0.927 39 H 0.286 0.714 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.295 15.945 11.385 26.806 hybrid contribution 1.839 -1.047 0.873 2.289 sum -16.456 14.898 12.258 25.358 Atomic orbital electron populations 1.20828 0.89177 1.03686 1.03142 1.20205 0.97541 0.92619 0.99026 1.21382 0.94093 0.98552 0.99822 1.21354 0.94936 0.98026 0.99839 1.21053 1.00043 0.92551 1.00032 1.19229 0.93802 0.92176 1.02631 1.20368 0.94771 0.98697 0.83768 0.84731 1.60962 1.09484 1.20482 1.37299 1.22011 0.98329 0.88803 0.97019 1.21343 0.95466 0.98071 0.98017 1.18956 0.95103 0.92633 0.94448 1.21717 1.14489 0.93543 1.28301 0.92261 1.26004 1.00617 0.94900 0.98435 1.70102 1.42861 0.98950 1.45504 0.85374 0.78575 0.78655 0.78291 1.18626 1.20398 1.20116 1.24909 0.84067 0.71256 0.89524 1.90749 1.20272 1.48495 1.84196 1.84532 1.42352 1.82016 1.22524 1.21060 0.92441 0.99111 1.00007 0.90229 0.90440 0.90949 0.83812 0.84293 0.86756 0.82977 0.96163 0.90275 0.92143 0.93640 0.99431 0.98462 0.92738 0.71434 0.84522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.01 71.24 0.71 -0.49 16 2 C -0.09 -1.56 5.88 -19.87 -0.12 -1.67 16 3 C -0.12 -1.95 9.70 22.27 0.22 -1.74 16 4 C -0.12 -2.30 10.05 22.27 0.22 -2.07 16 5 C -0.12 -2.68 9.32 22.27 0.21 -2.47 16 6 C -0.08 -1.76 4.88 -19.87 -0.10 -1.86 16 7 C 0.14 3.40 2.70 43.42 0.12 3.52 16 8 H 0.14 3.01 7.66 -2.39 -0.02 2.99 16 9 N -0.65 -19.60 5.56 -499.33 -2.78 -22.38 16 10 C 0.07 2.41 5.38 86.30 0.46 2.88 16 11 C -0.09 -3.95 5.41 30.59 0.17 -3.78 16 12 C 0.03 1.44 4.97 29.85 0.15 1.58 16 13 C -0.54 -31.97 9.11 25.60 0.23 -31.74 16 14 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 15 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 16 N -0.93 -58.06 13.29 21.45 0.28 -57.77 16 17 Si 0.97 45.36 29.54 68.60 2.03 47.39 16 18 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 21 C 0.46 11.92 7.43 71.24 0.53 12.44 16 22 O -0.55 -18.03 16.06 21.99 0.35 -17.67 16 23 O -0.50 -9.49 13.34 -51.43 -0.69 -10.17 16 24 C -0.11 -2.07 9.32 22.27 0.21 -1.86 16 25 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.08 0.66 8.09 -2.39 -0.02 0.64 16 27 H 0.07 0.72 8.08 -2.39 -0.02 0.70 16 28 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 29 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 30 H 0.11 2.68 7.26 -2.91 -0.02 2.66 16 31 H 0.35 10.89 7.10 -89.69 -0.64 10.25 16 32 H 0.02 0.77 7.62 -2.39 -0.02 0.76 16 33 H 0.08 2.72 8.05 -2.39 -0.02 2.70 16 34 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 36 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 37 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 38 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.42 4.56 9.10 -74.06 -0.67 3.89 16 40 H 0.14 2.16 8.04 -2.91 -0.02 2.13 16 Total: -1.00 -72.45 342.62 2.41 -70.04 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -0.27 Total: 17.49 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: 3.47 Total: -26.91 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -2.49 Total: -80.15 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.33 Total: -27.85 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -72.45 2.41 -70.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594397556.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.867 kcal (2) G-P(sol) polarization free energy of solvation -72.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds