Wall clock time and date at job start Mon Mar 30 2020 01:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00058 * 2 1 4 4 H 1.48500 * 109.46845 * 239.99714 * 3 2 1 5 5 H 1.48498 * 109.47028 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47227 * 119.99556 * 3 2 1 7 7 C 1.37874 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00034 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47387 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47360 * 179.97438 * 10 9 7 12 12 N 1.46905 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99870 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.46917 * 324.99892 * 13 12 11 15 15 C 1.53001 * 109.47087 * 205.00123 * 13 12 11 16 16 C 1.50698 * 109.47216 * 64.99354 * 15 13 12 17 17 C 1.38231 * 120.00468 * 269.73297 * 16 15 13 18 18 C 1.38237 * 119.99890 * 179.77096 * 17 16 15 19 19 C 1.38236 * 120.00274 * 0.49833 * 18 17 16 20 20 C 1.38243 * 119.99569 * 359.75376 * 19 18 17 21 21 C 1.38235 * 120.00186 * 359.97438 * 20 19 18 22 22 C 1.50694 * 109.47194 * 84.99897 * 13 12 11 23 23 O 1.20820 * 120.00206 * 359.97438 * 22 13 12 24 24 O 1.34231 * 119.99844 * 179.97438 * 22 13 12 25 25 H 0.97004 * 119.99990 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47558 * 59.99970 * 9 7 2 27 27 H 1.08998 * 109.47216 * 299.99633 * 9 7 2 28 28 H 1.09001 * 109.46514 * 59.99676 * 10 9 7 29 29 H 1.08998 * 109.46924 * 300.00156 * 10 9 7 30 30 H 1.09001 * 109.47393 * 60.00433 * 11 10 9 31 31 H 1.08998 * 109.47408 * 300.00078 * 11 10 9 32 32 H 1.00901 * 110.99869 * 56.04956 * 12 11 10 33 33 H 1.08994 * 109.47082 * 184.99888 * 15 13 12 34 34 H 1.08999 * 109.46730 * 304.99823 * 15 13 12 35 35 H 1.07997 * 120.00057 * 359.97438 * 17 16 15 36 36 H 1.08001 * 119.99936 * 180.22642 * 18 17 16 37 37 H 1.07994 * 120.00307 * 179.72721 * 19 18 17 38 38 H 1.08000 * 119.99745 * 179.97438 * 20 19 18 39 39 H 1.07994 * 120.00056 * 179.97438 * 21 20 19 40 40 H 0.96699 * 117.00122 * 179.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9870 0.0012 12 7 2.4348 -6.1036 0.0018 13 6 1.7345 -7.3950 0.0018 14 1 0.8211 -7.3129 0.5909 15 6 2.6403 -8.4664 0.6121 16 6 2.8884 -8.1472 2.0638 17 6 3.9691 -7.3645 2.4247 18 6 4.1938 -7.0679 3.7560 19 6 3.3436 -7.5624 4.7274 20 6 2.2658 -8.3495 4.3669 21 6 2.0379 -8.6415 3.0351 22 6 1.3867 -7.7778 -1.4136 23 8 1.6905 -7.0495 -2.3284 24 8 0.7393 -8.9280 -1.6579 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8718 -3.6043 0.8905 29 1 2.8718 -3.6043 -0.8894 30 1 0.8533 -5.0451 -0.8886 31 1 0.8538 -5.0445 0.8913 32 1 3.0696 -6.0362 0.7832 33 1 2.1568 -9.4399 0.5315 34 1 3.5899 -8.4869 0.0773 35 1 4.6360 -6.9821 1.6662 36 1 5.0361 -6.4534 4.0376 37 1 3.5217 -7.3343 5.7678 38 1 1.6018 -8.7362 5.1259 39 1 1.1961 -9.2567 2.7536 40 1 0.5375 -9.1305 -2.5817 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594608905.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:19 Heat of formation + Delta-G solvation = -82.775855 kcal Electronic energy + Delta-G solvation = -20953.480040 eV Core-core repulsion = 17732.272268 eV Total energy + Delta-G solvation = -3221.207772 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.44087 -39.40103 -36.83561 -35.83033 -34.19851 -32.64897 -31.08939 -30.91491 -28.84804 -25.84985 -24.97736 -22.87548 -22.43940 -21.45662 -20.73953 -19.93228 -18.04639 -17.08202 -16.62531 -16.32063 -15.73930 -15.52892 -15.18899 -14.92719 -14.49718 -14.20910 -14.03648 -13.59513 -13.51239 -12.91626 -12.83572 -12.33304 -12.19705 -12.02197 -11.59082 -11.45520 -11.31640 -11.21288 -11.12691 -10.79420 -10.60246 -10.51332 -10.29956 -9.65169 -9.30920 -9.08922 -9.03735 -8.89008 -8.32117 -8.28897 -5.94660 -3.96559 1.13494 1.23382 2.30940 2.93040 3.37263 3.41038 3.44047 3.61064 4.22163 4.51004 4.53469 4.70144 4.75556 4.86008 4.95725 5.06571 5.23649 5.30508 5.37478 5.41067 5.51824 5.62994 5.79313 5.87288 5.88063 5.90697 6.29397 6.33676 6.36647 6.40569 6.52075 6.70273 6.76974 6.83114 7.16584 7.21740 7.51364 7.73481 7.89179 8.00561 8.05786 8.49038 9.10193 9.66989 11.16882 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014192 B = 0.004212 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.408939 B = 6645.889217 C = 8091.726424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.105 4.105 11 C 0.059 3.941 12 N -0.672 5.672 13 C 0.104 3.896 14 H 0.083 0.917 15 C -0.078 4.078 16 C -0.090 4.090 17 C -0.117 4.117 18 C -0.114 4.114 19 C -0.121 4.121 20 C -0.119 4.119 21 C -0.114 4.114 22 C 0.475 3.525 23 O -0.483 6.483 24 O -0.525 6.525 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.013 0.987 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.027 0.973 32 H 0.352 0.648 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.350 -22.095 6.152 23.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.143 4.143 11 C -0.069 4.069 12 N -0.308 5.308 13 C -0.008 4.008 14 H 0.100 0.900 15 C -0.116 4.116 16 C -0.090 4.090 17 C -0.135 4.135 18 C -0.132 4.132 19 C -0.139 4.139 20 C -0.137 4.137 21 C -0.132 4.132 22 C 0.314 3.686 23 O -0.367 6.367 24 O -0.337 6.337 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.175 0.825 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 4.469 -21.652 5.621 22.811 hybrid contribution -0.118 0.876 0.286 0.929 sum 4.351 -20.776 5.907 22.033 Atomic orbital electron populations 1.69960 1.06064 1.26610 1.51028 1.25021 0.94838 0.99214 0.95403 0.86656 0.79574 0.83150 0.78610 1.20219 1.21327 1.20281 1.21213 0.93020 0.91030 1.50362 0.92704 1.19053 0.93998 0.91308 0.97105 1.21595 0.99231 0.92646 1.00792 1.22240 0.94050 0.90637 0.99957 1.60162 1.20550 0.99492 1.50629 1.20910 0.98531 0.92344 0.88980 0.89987 1.20717 1.00882 0.98123 0.91879 1.19776 0.95930 0.98570 0.94766 1.21191 0.97570 0.98058 0.96637 1.21207 0.99608 0.99399 0.92951 1.21204 0.95281 0.97836 0.99576 1.21155 0.97774 0.98634 0.96118 1.21071 0.99112 1.00237 0.92787 1.23502 0.74302 0.78092 0.92698 1.90749 1.48822 1.50874 1.46245 1.84504 1.71487 1.41206 1.36533 0.93023 0.96551 0.96827 0.93659 0.92294 0.91204 0.95502 0.82510 0.88925 0.89381 0.85344 0.85744 0.86083 0.86052 0.85918 0.73440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.29 55.43 0.74 -26.91 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 8 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.10 -2.29 5.41 -26.73 -0.14 -2.43 16 11 C 0.06 1.10 5.38 -3.82 -0.02 1.08 16 12 N -0.67 -10.36 5.84 -107.95 -0.63 -10.99 16 13 C 0.10 1.31 2.55 -68.87 -0.18 1.14 16 14 H 0.08 1.01 7.80 -51.93 -0.40 0.60 16 15 C -0.08 -0.76 4.94 -27.88 -0.14 -0.90 16 16 C -0.09 -0.91 4.83 -104.62 -0.51 -1.42 16 17 C -0.12 -1.20 8.04 -39.58 -0.32 -1.52 16 18 C -0.11 -1.12 10.05 -39.58 -0.40 -1.52 16 19 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 20 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 21 C -0.11 -1.08 9.70 -39.58 -0.38 -1.47 16 22 C 0.48 6.42 7.51 36.00 0.27 6.69 16 23 O -0.48 -8.55 16.68 -18.75 -0.31 -8.86 16 24 O -0.52 -5.11 13.23 -39.26 -0.52 -5.63 16 25 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.07 1.40 7.62 -51.93 -0.40 1.00 16 31 H 0.03 0.48 8.06 -51.93 -0.42 0.07 16 32 H 0.35 4.96 5.52 -39.29 -0.22 4.75 16 33 H 0.09 0.75 7.94 -51.93 -0.41 0.34 16 34 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 35 H 0.13 1.24 7.55 -52.49 -0.40 0.84 16 36 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.41 2.37 9.10 45.56 0.41 2.78 16 LS Contribution 340.46 15.07 5.13 5.13 Total: -1.00 -34.63 340.46 -8.95 -43.58 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.17 Total: 3.35 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -3.16 Total: -16.82 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.11 Total: -37.90 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.83 Total: -14.49 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.63 -8.95 -43.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594608905.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.199 kcal (2) G-P(sol) polarization free energy of solvation -34.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds