Wall clock time and date at job start Mon Mar 30 2020 02:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38260 * 120.00509 * 2 1 4 4 C 1.38212 * 120.00262 * 179.97438 * 3 2 1 5 5 C 1.38263 * 120.00099 * 0.27711 * 4 3 2 6 6 C 1.50694 * 119.99869 * 179.71939 * 5 4 3 7 7 N 1.46505 * 109.47143 * 259.99632 * 6 5 4 8 8 C 1.36935 * 120.00400 * 270.00307 * 7 6 5 9 9 H 1.07997 * 119.99543 * 137.09584 * 8 7 6 10 10 C 1.38808 * 119.99765 * 317.10054 * 8 7 6 11 11 N 1.31615 * 120.00074 * 344.77812 * 10 8 7 12 12 Si 1.86803 * 119.99688 * 164.78629 * 10 8 7 13 13 H 1.48502 * 109.47244 * 89.99521 * 12 10 8 14 14 H 1.48499 * 109.47129 * 209.99486 * 12 10 8 15 15 H 1.48491 * 109.47026 * 329.99538 * 12 10 8 16 16 C 1.46504 * 119.99470 * 90.00722 * 7 6 5 17 17 C 1.52996 * 109.47542 * 92.57564 * 16 7 6 18 18 C 1.50693 * 109.47140 * 180.02562 * 17 16 7 19 19 O 1.20824 * 120.00581 * 359.97438 * 18 17 16 20 20 O 1.34229 * 119.99834 * 180.02562 * 18 17 16 21 21 C 1.38214 * 119.99684 * 359.53200 * 5 4 3 22 22 C 1.50698 * 120.00040 * 180.20976 * 21 5 4 23 23 C 1.38220 * 120.00083 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47042 * 90.00028 * 1 2 3 25 25 H 1.08998 * 109.47757 * 210.00460 * 1 2 3 26 26 H 1.09004 * 109.46991 * 330.00529 * 1 2 3 27 27 H 1.08002 * 119.99418 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.99937 * 179.97438 * 4 3 2 29 29 H 1.08999 * 109.47379 * 20.00035 * 6 5 4 30 30 H 1.09005 * 109.46723 * 140.00652 * 6 5 4 31 31 H 0.97005 * 119.99919 * 180.02562 * 11 10 8 32 32 H 1.09002 * 109.46679 * 212.58054 * 16 7 6 33 33 H 1.09006 * 109.46783 * 332.57180 * 16 7 6 34 34 H 1.09001 * 109.46830 * 299.99714 * 17 16 7 35 35 H 1.08994 * 109.47050 * 59.99415 * 17 16 7 36 36 H 0.96699 * 117.00230 * 179.97438 * 20 18 17 37 37 H 1.09001 * 109.47274 * 270.21130 * 22 21 5 38 38 H 1.08996 * 109.47021 * 30.21111 * 22 21 5 39 39 H 1.08997 * 109.47510 * 150.21108 * 22 21 5 40 40 H 1.08003 * 119.99600 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0001 -0.0047 6 6 5.7787 -0.0001 -0.0105 7 7 6.2618 -0.2371 -1.3732 8 6 6.4883 -1.5161 -1.8066 9 1 6.1719 -1.8153 -2.7949 10 6 7.1245 -2.4281 -0.9757 11 7 7.7720 -2.0070 0.0900 12 14 7.0616 -4.2529 -1.3701 13 1 8.2146 -4.6126 -2.2342 14 1 7.1255 -5.0344 -0.1090 15 1 5.7950 -4.5624 -2.0807 16 6 6.5026 0.8944 -2.2720 17 6 7.9653 1.3296 -2.1637 18 6 8.2128 2.4939 -3.0878 19 8 7.3118 2.9306 -3.7642 20 8 9.4344 3.0453 -3.1603 21 6 3.5806 -1.1971 -0.0007 22 6 4.3340 -2.5022 -0.0017 23 6 2.1980 -1.1970 -0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.6583 2.1326 -0.0004 28 1 4.1205 2.1325 0.0001 29 1 6.1434 0.9648 0.3416 30 1 6.1445 -0.7889 0.6469 31 1 8.2169 -2.6443 0.6705 32 1 6.2874 0.5956 -3.2980 33 1 5.8546 1.7251 -1.9921 34 1 8.1804 1.6285 -1.1377 35 1 8.6132 0.4990 -2.4435 36 1 9.5448 3.7898 -3.7676 37 1 4.5153 -2.8163 -1.0296 38 1 5.2866 -2.3722 0.5119 39 1 3.7451 -3.2621 0.5119 40 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600410667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:53 Heat of formation + Delta-G solvation = -62.050089 kcal Electronic energy + Delta-G solvation = -21920.689745 eV Core-core repulsion = 18700.380709 eV Total energy + Delta-G solvation = -3220.309035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.78106 -39.00738 -36.17550 -35.61606 -32.97375 -32.18312 -31.35005 -29.79225 -27.52592 -26.43220 -24.76116 -24.06151 -21.67805 -21.35154 -20.07980 -19.11507 -17.71621 -16.87024 -15.95357 -15.55491 -15.25562 -15.02589 -14.68433 -14.13912 -13.86909 -13.49367 -13.32371 -12.91802 -12.60548 -12.52593 -12.24004 -12.22674 -12.02766 -11.54994 -11.50676 -11.24710 -11.12571 -10.96530 -10.68101 -10.60745 -10.40041 -10.29814 -10.14115 -10.06325 -9.90931 -9.72561 -8.54963 -8.06127 -7.67679 -6.65582 -5.92292 -3.55629 2.04727 2.09219 2.66669 3.26330 3.35242 3.37149 3.54388 4.33180 4.44913 5.21159 5.32245 5.33496 5.53010 5.60866 5.69364 5.74205 5.82093 5.87343 5.87874 6.02513 6.14150 6.20903 6.22956 6.39521 6.42513 6.50912 6.69033 6.71489 6.76318 6.81051 6.86886 7.00516 7.13535 7.16547 7.28882 7.45591 7.66444 7.72785 7.81824 8.29994 8.45245 9.06509 9.63831 10.27389 11.07149 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011764 B = 0.007433 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.485046 B = 3766.126097 C = 5696.417698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.107 4.107 3 C -0.136 4.136 4 C -0.117 4.117 5 C -0.083 4.083 6 C 0.175 3.825 7 N -0.570 5.570 8 C -0.260 4.260 9 H 0.059 0.941 10 C 0.026 3.974 11 N -0.885 5.885 12 Si 0.886 3.114 13 H -0.285 1.285 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.163 3.837 17 C -0.129 4.129 18 C 0.478 3.522 19 O -0.529 6.529 20 O -0.525 6.525 21 C -0.051 4.051 22 C -0.120 4.120 23 C -0.132 4.132 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.032 0.968 30 H 0.106 0.894 31 H 0.258 0.742 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.397 0.603 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.035 0.965 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.979 4.929 0.351 7.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.108 4.108 3 C -0.154 4.154 4 C -0.136 4.136 5 C -0.085 4.085 6 C 0.050 3.950 7 N -0.288 5.288 8 C -0.390 4.390 9 H 0.076 0.924 10 C -0.175 4.175 11 N -0.526 5.526 12 Si 0.714 3.286 13 H -0.212 1.212 14 H -0.211 1.211 15 H -0.198 1.198 16 C 0.036 3.964 17 C -0.169 4.169 18 C 0.321 3.679 19 O -0.418 6.418 20 O -0.336 6.336 21 C -0.052 4.052 22 C -0.176 4.176 23 C -0.150 4.150 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.126 0.874 28 H 0.128 0.872 29 H 0.051 0.949 30 H 0.123 0.877 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.114 0.886 35 H 0.126 0.874 36 H 0.254 0.746 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.054 0.946 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.162 4.595 0.577 6.936 hybrid contribution 0.140 -0.386 -0.643 0.763 sum -5.022 4.209 -0.066 6.553 Atomic orbital electron populations 1.20682 0.92283 1.01779 1.01498 1.19662 0.95110 0.93420 1.02576 1.20797 0.94332 0.96644 1.03652 1.21000 0.93714 0.97611 1.01306 1.21035 0.99562 0.91678 0.96263 1.20016 0.85336 1.00605 0.89051 1.43690 1.73067 1.01558 1.10496 1.18966 1.32293 0.86592 1.01149 0.92367 1.25285 0.95604 0.98537 0.98059 1.69920 1.33333 1.33487 1.15900 0.86647 0.78318 0.85812 0.77809 1.21208 1.21106 1.19841 1.20764 0.89598 0.90556 0.95467 1.22371 1.04276 0.92611 0.97648 1.24450 0.78774 0.83434 0.81216 1.90656 1.44872 1.62488 1.43736 1.84663 1.35653 1.49438 1.63828 1.19799 0.92657 0.95836 0.96859 1.21152 1.00447 0.92436 1.03543 1.20836 0.93944 0.96746 1.03458 0.92000 0.92258 0.92310 0.87447 0.87169 0.94907 0.87665 0.93204 0.93068 0.93729 0.88575 0.87413 0.74565 0.89894 0.89050 0.94580 0.87295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.01 36.00 0.36 -0.96 16 2 C -0.11 -1.76 5.88 -104.62 -0.62 -2.37 16 3 C -0.14 -2.27 9.70 -39.58 -0.38 -2.65 16 4 C -0.12 -2.15 9.67 -39.58 -0.38 -2.54 16 5 C -0.08 -1.69 5.46 -104.62 -0.57 -2.26 16 6 C 0.18 3.84 4.99 -5.19 -0.03 3.81 16 7 N -0.57 -12.99 2.37 -174.61 -0.41 -13.41 16 8 C -0.26 -6.41 7.42 -15.06 -0.11 -6.53 16 9 H 0.06 1.49 7.87 -52.49 -0.41 1.08 16 10 C 0.03 0.64 2.99 -17.43 -0.05 0.59 16 11 N -0.88 -22.60 11.27 55.49 0.63 -21.98 16 12 Si 0.89 19.90 27.61 -169.99 -4.69 15.20 16 13 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 16 C 0.16 3.38 4.96 -4.04 -0.02 3.36 16 17 C -0.13 -2.39 6.13 -27.89 -0.17 -2.56 16 18 C 0.48 8.16 8.33 36.00 0.30 8.46 16 19 O -0.53 -10.25 16.74 -18.75 -0.31 -10.56 16 20 O -0.52 -7.32 13.42 -39.26 -0.53 -7.84 16 21 C -0.05 -1.02 5.88 -104.63 -0.62 -1.64 16 22 C -0.12 -2.46 7.23 36.00 0.26 -2.20 16 23 C -0.13 -2.35 9.36 -39.58 -0.37 -2.72 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 26 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 27 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 28 H 0.11 1.86 8.04 -52.49 -0.42 1.44 16 29 H 0.03 0.68 7.93 -51.93 -0.41 0.27 16 30 H 0.11 2.54 4.14 -51.93 -0.22 2.33 16 31 H 0.26 6.46 8.31 -40.82 -0.34 6.12 16 32 H 0.05 1.11 8.02 -51.93 -0.42 0.69 16 33 H 0.04 0.90 8.01 -51.93 -0.42 0.49 16 34 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 35 H 0.11 2.14 8.14 -51.93 -0.42 1.72 16 36 H 0.40 3.60 9.10 45.56 0.41 4.01 16 37 H 0.08 1.83 5.68 -51.93 -0.29 1.53 16 38 H 0.09 2.05 4.35 -51.93 -0.23 1.83 16 39 H 0.04 0.65 8.09 -51.93 -0.42 0.23 16 40 H 0.11 1.74 8.06 -52.48 -0.42 1.31 16 LS Contribution 327.00 15.07 4.93 4.93 Total: -1.00 -27.71 327.00 -7.70 -35.42 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -4.91 Total: 8.46 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -2.40 Total: -10.22 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.21 Total: -35.39 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.84 Total: -18.40 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.69 Total: 15.20 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.71 -7.70 -35.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600410667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.632 kcal (2) G-P(sol) polarization free energy of solvation -27.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds