Wall clock time and date at job start Mon Mar 30 2020 02:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38260 * 120.00509 * 2 1 4 4 C 1.38212 * 120.00262 * 179.97438 * 3 2 1 5 5 C 1.38263 * 120.00099 * 0.27711 * 4 3 2 6 6 C 1.50694 * 119.99869 * 179.71939 * 5 4 3 7 7 N 1.46505 * 109.47143 * 259.99632 * 6 5 4 8 8 C 1.36935 * 120.00400 * 270.00307 * 7 6 5 9 9 H 1.07997 * 119.99543 * 137.09584 * 8 7 6 10 10 C 1.38808 * 119.99765 * 317.10054 * 8 7 6 11 11 N 1.31615 * 120.00074 * 344.77812 * 10 8 7 12 12 Si 1.86803 * 119.99688 * 164.78629 * 10 8 7 13 13 H 1.48502 * 109.47244 * 89.99521 * 12 10 8 14 14 H 1.48499 * 109.47129 * 209.99486 * 12 10 8 15 15 H 1.48491 * 109.47026 * 329.99538 * 12 10 8 16 16 C 1.46504 * 119.99470 * 90.00722 * 7 6 5 17 17 C 1.52996 * 109.47542 * 92.57564 * 16 7 6 18 18 C 1.50693 * 109.47140 * 180.02562 * 17 16 7 19 19 O 1.20824 * 120.00581 * 359.97438 * 18 17 16 20 20 O 1.34229 * 119.99834 * 180.02562 * 18 17 16 21 21 C 1.38214 * 119.99684 * 359.53200 * 5 4 3 22 22 C 1.50698 * 120.00040 * 180.20976 * 21 5 4 23 23 C 1.38220 * 120.00083 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47042 * 90.00028 * 1 2 3 25 25 H 1.08998 * 109.47757 * 210.00460 * 1 2 3 26 26 H 1.09004 * 109.46991 * 330.00529 * 1 2 3 27 27 H 1.08002 * 119.99418 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.99937 * 179.97438 * 4 3 2 29 29 H 1.08999 * 109.47379 * 20.00035 * 6 5 4 30 30 H 1.09005 * 109.46723 * 140.00652 * 6 5 4 31 31 H 0.97005 * 119.99919 * 180.02562 * 11 10 8 32 32 H 1.09002 * 109.46679 * 212.58054 * 16 7 6 33 33 H 1.09006 * 109.46783 * 332.57180 * 16 7 6 34 34 H 1.09001 * 109.46830 * 299.99714 * 17 16 7 35 35 H 1.08994 * 109.47050 * 59.99415 * 17 16 7 36 36 H 0.96699 * 117.00230 * 179.97438 * 20 18 17 37 37 H 1.09001 * 109.47274 * 270.21130 * 22 21 5 38 38 H 1.08996 * 109.47021 * 30.21111 * 22 21 5 39 39 H 1.08997 * 109.47510 * 150.21108 * 22 21 5 40 40 H 1.08003 * 119.99600 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0001 -0.0047 6 6 5.7787 -0.0001 -0.0105 7 7 6.2618 -0.2371 -1.3732 8 6 6.4883 -1.5161 -1.8066 9 1 6.1719 -1.8153 -2.7949 10 6 7.1245 -2.4281 -0.9757 11 7 7.7720 -2.0070 0.0900 12 14 7.0616 -4.2529 -1.3701 13 1 8.2146 -4.6126 -2.2342 14 1 7.1255 -5.0344 -0.1090 15 1 5.7950 -4.5624 -2.0807 16 6 6.5026 0.8944 -2.2720 17 6 7.9653 1.3296 -2.1637 18 6 8.2128 2.4939 -3.0878 19 8 7.3118 2.9306 -3.7642 20 8 9.4344 3.0453 -3.1603 21 6 3.5806 -1.1971 -0.0007 22 6 4.3340 -2.5022 -0.0017 23 6 2.1980 -1.1970 -0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.6583 2.1326 -0.0004 28 1 4.1205 2.1325 0.0001 29 1 6.1434 0.9648 0.3416 30 1 6.1445 -0.7889 0.6469 31 1 8.2169 -2.6443 0.6705 32 1 6.2874 0.5956 -3.2980 33 1 5.8546 1.7251 -1.9921 34 1 8.1804 1.6285 -1.1377 35 1 8.6132 0.4990 -2.4435 36 1 9.5448 3.7898 -3.7676 37 1 4.5153 -2.8163 -1.0296 38 1 5.2866 -2.3722 0.5119 39 1 3.7451 -3.2621 0.5119 40 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600410667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:52 Heat of formation + Delta-G solvation = -76.688925 kcal Electronic energy + Delta-G solvation = -21921.324532 eV Core-core repulsion = 18700.380709 eV Total energy + Delta-G solvation = -3220.943823 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.16445 -40.43224 -37.75958 -36.99482 -34.40605 -33.93047 -32.82989 -31.38217 -28.97773 -27.93795 -26.49058 -25.51154 -23.22705 -22.79501 -21.56951 -20.60237 -19.10081 -18.61513 -17.39299 -17.02204 -16.85045 -16.45138 -16.33629 -15.60649 -15.46960 -15.08411 -14.62042 -14.40255 -14.02976 -13.92901 -13.80591 -13.63094 -13.44673 -13.08214 -13.00810 -12.76039 -12.50058 -12.49576 -12.41390 -12.22140 -12.11983 -11.91821 -11.64289 -11.61428 -11.53327 -11.34151 -10.44027 -9.46466 -9.10406 -8.50047 -7.80639 -5.47447 0.65199 0.67960 1.27521 1.43936 1.49982 1.55047 2.23620 2.51796 2.99716 3.31639 3.90900 4.06880 4.13068 4.20941 4.25337 4.27560 4.42320 4.54068 4.64446 4.68649 4.80744 4.84491 4.90060 4.95042 4.99085 5.05142 5.08356 5.12757 5.25245 5.28219 5.47235 5.59066 5.66227 5.68969 5.76429 5.82447 5.83785 6.14321 6.37320 6.55352 7.08139 7.20507 7.81152 8.41197 9.15557 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011764 B = 0.007433 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.485046 B = 3766.126097 C = 5696.417698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.103 4.103 3 C -0.136 4.136 4 C -0.124 4.124 5 C -0.107 4.107 6 C 0.183 3.817 7 N -0.580 5.580 8 C -0.263 4.263 9 H 0.043 0.957 10 C 0.004 3.996 11 N -0.904 5.904 12 Si 0.925 3.075 13 H -0.289 1.289 14 H -0.285 1.285 15 H -0.270 1.270 16 C 0.167 3.833 17 C -0.119 4.119 18 C 0.493 3.507 19 O -0.552 6.552 20 O -0.514 6.514 21 C -0.075 4.075 22 C -0.110 4.110 23 C -0.139 4.139 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.138 0.862 28 H 0.120 0.880 29 H 0.034 0.966 30 H 0.081 0.919 31 H 0.254 0.746 32 H 0.037 0.963 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.423 0.577 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.572 5.966 0.288 8.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.104 4.104 3 C -0.153 4.153 4 C -0.143 4.143 5 C -0.110 4.110 6 C 0.058 3.942 7 N -0.299 5.299 8 C -0.393 4.393 9 H 0.060 0.940 10 C -0.195 4.195 11 N -0.547 5.547 12 Si 0.753 3.247 13 H -0.216 1.216 14 H -0.211 1.211 15 H -0.195 1.195 16 C 0.041 3.959 17 C -0.159 4.159 18 C 0.337 3.663 19 O -0.443 6.443 20 O -0.328 6.328 21 C -0.076 4.076 22 C -0.166 4.166 23 C -0.157 4.157 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.156 0.844 28 H 0.138 0.862 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.285 0.715 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.744 5.659 0.502 8.817 hybrid contribution 0.602 -0.617 -0.639 1.073 sum -6.142 5.042 -0.137 7.948 Atomic orbital electron populations 1.20747 0.89135 1.03433 1.02687 1.20147 0.97400 0.92600 1.00228 1.21173 0.93684 0.98236 1.02243 1.21169 0.94846 0.97162 1.01135 1.20923 0.98583 0.92922 0.98547 1.19822 0.86758 0.99578 0.88072 1.43777 1.73760 1.01478 1.10933 1.18906 1.32024 0.87755 1.00636 0.93956 1.25578 0.95456 1.00576 0.97922 1.70005 1.34166 1.33978 1.16509 0.86025 0.78076 0.83152 0.77417 1.21582 1.21112 1.19492 1.20654 0.91048 0.90019 0.94208 1.22021 1.02452 0.93132 0.98332 1.23814 0.79291 0.82842 0.80326 1.90658 1.45872 1.63207 1.44575 1.84571 1.33443 1.50370 1.64391 1.19889 0.93918 0.95282 0.98513 1.20967 0.99894 0.93703 1.02080 1.21080 0.93061 0.98418 1.03121 0.90866 0.91014 0.90387 0.84373 0.86197 0.94719 0.90132 0.93586 0.94502 0.93325 0.88368 0.88805 0.71548 0.91930 0.91351 0.92687 0.85560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.17 10.01 71.23 0.71 -1.45 16 2 C -0.10 -3.08 5.88 -19.87 -0.12 -3.20 16 3 C -0.14 -4.14 9.70 22.27 0.22 -3.92 16 4 C -0.12 -4.42 9.67 22.27 0.22 -4.20 16 5 C -0.11 -4.41 5.46 -19.87 -0.11 -4.52 16 6 C 0.18 8.22 4.99 85.63 0.43 8.65 16 7 N -0.58 -27.18 2.37 -706.33 -1.68 -28.86 16 8 C -0.26 -13.37 7.42 84.03 0.62 -12.74 16 9 H 0.04 2.26 7.87 -2.91 -0.02 2.23 16 10 C 0.00 0.19 2.99 84.86 0.25 0.45 16 11 N -0.90 -47.47 11.27 21.65 0.24 -47.22 16 12 Si 0.93 41.54 27.61 68.60 1.89 43.44 16 13 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 14 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 16 C 0.17 7.04 4.96 86.38 0.43 7.46 16 17 C -0.12 -4.44 6.13 29.84 0.18 -4.25 16 18 C 0.49 16.30 8.33 71.23 0.59 16.89 16 19 O -0.55 -20.83 16.74 21.97 0.37 -20.47 16 20 O -0.51 -13.19 13.42 -51.41 -0.69 -13.88 16 21 C -0.08 -3.03 5.88 -19.87 -0.12 -3.15 16 22 C -0.11 -4.60 7.23 71.24 0.51 -4.09 16 23 C -0.14 -4.73 9.36 22.27 0.21 -4.52 16 24 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.07 1.35 8.09 -2.39 -0.02 1.33 16 26 H 0.08 1.36 8.09 -2.38 -0.02 1.34 16 27 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 28 H 0.12 3.91 8.04 -2.91 -0.02 3.88 16 29 H 0.03 1.48 7.93 -2.39 -0.02 1.46 16 30 H 0.08 4.06 4.14 -2.38 -0.01 4.05 16 31 H 0.25 13.09 8.31 -92.70 -0.77 12.32 16 32 H 0.04 1.63 8.02 -2.39 -0.02 1.61 16 33 H 0.05 1.98 8.01 -2.38 -0.02 1.96 16 34 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 35 H 0.09 3.79 8.14 -2.39 -0.02 3.77 16 36 H 0.42 6.43 9.10 -74.06 -0.67 5.75 16 37 H 0.06 2.82 5.68 -2.39 -0.01 2.81 16 38 H 0.07 3.18 4.35 -2.39 -0.01 3.17 16 39 H 0.05 1.99 8.09 -2.39 -0.02 1.97 16 40 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -59.97 327.00 4.55 -55.42 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.38 Total: 24.16 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 4.03 Total: -12.60 kcal Atomic # 7 Polarization: -74.64 SS G_CDS: -1.43 Total: -76.08 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.32 Total: -34.35 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.89 Total: 43.44 kcal Total: -59.97 4.55 -55.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600410667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.266 kcal (2) G-P(sol) polarization free energy of solvation -59.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds