Wall clock time and date at job start Mon Mar 30 2020 02:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 120.00036 * 2 1 4 4 C 1.38213 * 119.99666 * 179.74118 * 3 2 1 5 5 C 1.38255 * 120.00136 * 0.55912 * 4 3 2 6 6 C 1.38217 * 120.00091 * 359.69520 * 5 4 3 7 7 C 1.38214 * 120.00023 * 180.27821 * 2 1 3 8 8 C 1.50699 * 119.99714 * 359.97438 * 7 2 1 9 9 H 1.09000 * 109.47329 * 40.00252 * 8 7 2 10 10 N 1.46900 * 109.46860 * 160.00081 * 8 7 2 11 11 C 1.46905 * 111.00094 * 204.99888 * 10 8 7 12 12 C 1.53003 * 109.47072 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.47021 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.47053 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00357 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99831 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00363 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00071 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47170 * 90.00215 * 18 16 14 20 20 H 1.48501 * 109.46979 * 210.00369 * 18 16 14 21 21 H 1.48503 * 109.46823 * 330.00229 * 18 16 14 22 22 C 1.50704 * 109.47337 * 279.99938 * 8 7 2 23 23 O 1.20826 * 120.00133 * 240.00253 * 22 8 7 24 24 O 1.34228 * 119.99476 * 60.00318 * 22 8 7 25 25 H 1.09002 * 109.47152 * 269.72306 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.72407 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.72387 * 1 2 3 28 28 H 1.08000 * 119.99861 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.99581 * 180.27742 * 4 3 2 30 30 H 1.08004 * 119.99870 * 179.72176 * 5 4 3 31 31 H 1.07994 * 119.99924 * 180.02562 * 6 5 4 32 32 H 1.00893 * 111.00166 * 328.95498 * 10 8 7 33 33 H 1.09002 * 109.47186 * 299.99818 * 11 10 8 34 34 H 1.08997 * 109.47046 * 60.00402 * 11 10 8 35 35 H 1.09002 * 109.46822 * 299.99864 * 12 11 10 36 36 H 1.08997 * 109.47002 * 60.00198 * 12 11 10 37 37 H 1.08998 * 109.46816 * 300.00259 * 13 12 11 38 38 H 1.09000 * 109.47033 * 59.99452 * 13 12 11 39 39 H 0.97002 * 120.00533 * 179.97438 * 17 16 14 40 40 H 0.96706 * 116.99847 * 179.97438 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0054 5 6 4.2717 0.0000 -0.0009 6 6 3.5806 -1.1970 -0.0062 7 6 2.1981 -1.1969 -0.0058 8 6 1.4446 -2.5020 -0.0116 9 1 0.5809 -2.4200 -0.6715 10 7 2.3266 -3.5746 -0.4906 11 6 1.5478 -4.6782 -1.0681 12 6 2.4988 -5.7738 -1.5541 13 6 1.6877 -6.9230 -2.1562 14 6 2.6244 -8.0018 -2.6355 15 1 3.6914 -7.8803 -2.5217 16 6 2.1190 -9.1445 -3.2184 17 7 0.8196 -9.2929 -3.3566 18 14 3.2801 -10.4822 -3.8119 19 1 3.5240 -11.4497 -2.7121 20 1 2.6713 -11.1892 -4.9673 21 1 4.5679 -9.8709 -4.2282 22 6 0.9802 -2.8202 1.3864 23 8 1.3465 -3.8362 1.9281 24 8 0.1597 -1.9748 2.0297 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3633 -0.8875 -0.5181 27 1 -0.3633 0.8925 -0.5096 28 1 1.6583 2.1326 0.0004 29 1 4.1204 2.1326 0.0099 30 1 5.3517 0.0000 -0.0012 31 1 4.1206 -2.1323 -0.0107 32 1 2.9990 -3.2205 -1.1542 33 1 0.8800 -5.0874 -0.3099 34 1 0.9603 -4.3077 -1.9081 35 1 3.1669 -5.3650 -2.3122 36 1 3.0860 -6.1443 -0.7139 37 1 1.0193 -7.3318 -1.3985 38 1 1.1007 -6.5522 -2.9965 39 1 0.4641 -10.0967 -3.7670 40 1 -0.1115 -2.2218 2.9245 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600568663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:50 Heat of formation + Delta-G solvation = -75.826976 kcal Electronic energy + Delta-G solvation = -21080.132812 eV Core-core repulsion = 17859.226366 eV Total energy + Delta-G solvation = -3220.906446 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.70121 -39.27671 -36.70886 -35.75179 -33.89825 -33.02443 -32.00947 -30.24078 -27.76083 -26.80144 -25.56874 -22.83507 -22.60914 -21.32787 -20.68646 -19.95304 -18.09875 -17.11209 -16.64493 -16.20457 -15.80961 -15.49136 -14.94046 -14.79411 -14.44361 -14.05117 -13.86180 -13.78013 -13.25066 -13.18161 -12.68376 -12.43114 -12.22422 -12.07470 -11.75190 -11.57469 -11.41713 -11.14094 -11.04924 -10.80873 -10.64224 -10.49697 -10.43442 -9.67998 -9.33709 -9.05256 -8.97206 -8.78636 -8.39438 -8.30779 -5.96212 -3.98109 1.06886 1.22006 2.32028 2.92726 3.35256 3.40977 3.44618 3.58767 4.20063 4.41333 4.50543 4.68982 4.73217 4.88197 4.99144 5.15569 5.28910 5.37285 5.39679 5.54675 5.58394 5.67260 5.74307 5.79526 5.87422 6.05280 6.24589 6.29626 6.33850 6.39982 6.51993 6.67605 6.74028 6.81171 7.12720 7.18363 7.43907 7.71935 7.86944 8.00567 8.04189 8.47318 9.08932 9.65670 11.15326 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025518 B = 0.003403 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.008636 B = 8227.080292 C = 8741.166690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.060 4.060 3 C -0.126 4.126 4 C -0.111 4.111 5 C -0.129 4.129 6 C -0.095 4.095 7 C -0.099 4.099 8 C 0.141 3.859 9 H 0.092 0.908 10 N -0.670 5.670 11 C 0.058 3.942 12 C -0.105 4.105 13 C 0.022 3.978 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.482 3.518 23 O -0.482 6.482 24 O -0.519 6.519 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.138 0.862 32 H 0.353 0.647 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.046 0.954 36 H 0.059 0.941 37 H 0.016 0.984 38 H 0.014 0.986 39 H 0.260 0.740 40 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.279 23.673 8.092 25.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.060 4.060 3 C -0.144 4.144 4 C -0.130 4.130 5 C -0.147 4.147 6 C -0.113 4.113 7 C -0.100 4.100 8 C 0.029 3.971 9 H 0.109 0.891 10 N -0.305 5.305 11 C -0.070 4.070 12 C -0.143 4.143 13 C -0.015 4.015 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C 0.321 3.679 23 O -0.367 6.367 24 O -0.331 6.331 25 H 0.105 0.895 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.155 0.845 32 H 0.175 0.825 33 H 0.089 0.911 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.035 0.965 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 0.433 23.052 8.382 24.532 hybrid contribution 0.129 -0.621 -0.551 0.841 sum 0.562 22.431 7.831 23.765 Atomic orbital electron populations 1.20915 0.90779 1.02380 1.03431 1.19762 0.96364 0.92190 0.97722 1.20983 0.94241 0.97264 1.01939 1.21190 0.94342 0.98111 0.99309 1.21146 1.00057 0.92279 1.01197 1.21185 0.93375 0.99082 0.97685 1.19389 0.93889 0.92453 1.04223 1.19761 0.96584 0.89801 0.90922 0.89129 1.60152 1.17334 1.08423 1.44613 1.22278 0.96527 0.91240 0.96916 1.21604 0.97815 0.95298 0.99574 1.19062 0.95219 0.91669 0.95579 1.21249 0.93246 1.02395 1.38712 0.92628 1.25030 0.95042 0.98382 0.96094 1.69968 1.11292 1.27702 1.44692 0.86589 0.81037 0.82018 0.78328 1.20662 1.21284 1.19872 1.23263 0.75368 0.80760 0.88496 1.90750 1.52992 1.26037 1.66878 1.84563 1.62116 1.52230 1.34173 0.89525 0.91554 0.91775 0.85950 0.86093 0.85819 0.84450 0.82463 0.91070 0.95291 0.93520 0.92228 0.96524 0.96779 0.93062 0.73668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 8.55 36.01 0.31 -0.69 16 2 C -0.06 -0.61 5.75 -104.62 -0.60 -1.21 16 3 C -0.13 -1.14 9.70 -39.58 -0.38 -1.52 16 4 C -0.11 -0.98 10.05 -39.58 -0.40 -1.38 16 5 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 6 C -0.10 -1.07 8.87 -39.58 -0.35 -1.42 16 7 C -0.10 -1.15 4.95 -104.63 -0.52 -1.67 16 8 C 0.14 1.83 2.22 -70.01 -0.16 1.67 16 9 H 0.09 1.10 6.07 -51.93 -0.31 0.78 16 10 N -0.67 -10.11 5.14 -109.18 -0.56 -10.67 16 11 C 0.06 1.04 5.38 -3.82 -0.02 1.02 16 12 C -0.10 -2.23 5.41 -26.73 -0.14 -2.38 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 18 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.48 6.68 7.49 36.01 0.27 6.95 16 23 O -0.48 -8.63 16.68 -18.75 -0.31 -8.94 16 24 O -0.52 -5.12 10.66 -39.25 -0.42 -5.54 16 25 H 0.09 0.70 6.75 -51.93 -0.35 0.35 16 26 H 0.07 0.58 6.12 -51.93 -0.32 0.27 16 27 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 28 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 29 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 30 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 31 H 0.14 1.58 6.70 -52.49 -0.35 1.23 16 32 H 0.35 4.78 6.97 -39.30 -0.27 4.50 16 33 H 0.07 1.38 7.62 -51.93 -0.40 0.99 16 34 H 0.03 0.49 8.06 -51.93 -0.42 0.07 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.40 2.45 9.10 45.56 0.41 2.86 16 LS Contribution 332.86 15.07 5.02 5.02 Total: -1.00 -34.16 332.86 -8.43 -42.59 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -4.93 Total: 2.84 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -2.94 Total: -15.62 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.18 Total: -37.41 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.73 Total: -14.48 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.16 -8.43 -42.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600568663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.235 kcal (2) G-P(sol) polarization free energy of solvation -34.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds