Wall clock time and date at job start Mon Mar 30 2020 02:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 120.00036 * 2 1 4 4 C 1.38212 * 119.99909 * 179.78676 * 3 2 1 5 5 C 1.38256 * 119.99940 * 0.44775 * 4 3 2 6 6 C 1.38217 * 120.00102 * 359.80658 * 5 4 3 7 7 C 1.38214 * 120.00023 * 180.27821 * 2 1 3 8 8 C 1.50707 * 119.99903 * 359.97438 * 7 2 1 9 9 H 1.08997 * 109.46799 * 325.00788 * 8 7 2 10 10 N 1.46895 * 109.47004 * 205.00206 * 8 7 2 11 11 C 1.46899 * 110.99988 * 155.00293 * 10 8 7 12 12 C 1.53000 * 109.47524 * 179.97438 * 11 10 8 13 13 C 1.52994 * 109.47300 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.47113 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99691 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99812 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00346 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99714 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46954 * 90.00369 * 18 16 14 20 20 H 1.48496 * 109.47482 * 210.00213 * 18 16 14 21 21 H 1.48506 * 109.47373 * 330.00758 * 18 16 14 22 22 C 1.50704 * 109.46542 * 85.00114 * 8 7 2 23 23 O 1.20831 * 119.99578 * 120.00405 * 22 8 7 24 24 O 1.34226 * 120.00378 * 299.99399 * 22 8 7 25 25 H 1.09002 * 109.47152 * 269.72306 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.72407 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.72387 * 1 2 3 28 28 H 1.08000 * 119.99861 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.99806 * 180.27742 * 4 3 2 30 30 H 1.07998 * 120.00129 * 179.83731 * 5 4 3 31 31 H 1.07997 * 120.00194 * 180.02562 * 6 5 4 32 32 H 1.00900 * 111.00504 * 31.04865 * 10 8 7 33 33 H 1.09003 * 109.46754 * 300.00223 * 11 10 8 34 34 H 1.09004 * 109.47219 * 59.99414 * 11 10 8 35 35 H 1.08996 * 109.46803 * 300.00325 * 12 11 10 36 36 H 1.08999 * 109.46830 * 59.99700 * 12 11 10 37 37 H 1.08998 * 109.46999 * 299.99796 * 13 12 11 38 38 H 1.08999 * 109.47383 * 60.00089 * 13 12 11 39 39 H 0.97002 * 120.00320 * 179.97438 * 17 16 14 40 40 H 0.96695 * 117.00094 * 179.97438 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0045 5 6 4.2717 0.0000 -0.0004 6 6 3.5806 -1.1970 -0.0058 7 6 2.1981 -1.1969 -0.0058 8 6 1.4446 -2.5021 -0.0116 9 1 0.5341 -2.3985 0.5786 10 7 2.2870 -3.5564 0.5686 11 6 1.4658 -4.6405 1.1238 12 6 2.3762 -5.7176 1.7169 13 6 1.5209 -6.8464 2.2957 14 6 2.4177 -7.9076 2.8794 15 1 3.4905 -7.7889 2.8410 16 6 1.8687 -9.0299 3.4625 17 7 0.5624 -9.1746 3.5089 18 14 2.9804 -10.3456 4.1853 19 1 3.2472 -10.0382 5.6135 20 1 2.3148 -11.6688 4.0798 21 1 4.2631 -10.3755 3.4375 22 6 1.0857 -2.8685 -1.4286 23 8 1.4902 -3.9021 -1.9062 24 8 0.3166 -2.0469 -2.1602 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3633 -0.8875 -0.5181 27 1 -0.3633 0.8925 -0.5096 28 1 1.6583 2.1326 0.0004 29 1 4.1204 2.1326 0.0090 30 1 5.3517 0.0000 0.0004 31 1 4.1206 -2.1323 -0.0092 32 1 2.9083 -3.1789 1.2682 33 1 0.8175 -4.2420 1.9042 34 1 0.8559 -5.0762 0.3323 35 1 3.0242 -6.1159 0.9362 36 1 2.9863 -5.2821 2.5083 37 1 0.8733 -6.4477 3.0766 38 1 0.9105 -7.2820 1.5047 39 1 0.1761 -9.9643 3.9187 40 1 0.1135 -2.3244 -3.0639 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600568664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:52 Heat of formation + Delta-G solvation = -99.519259 kcal Electronic energy + Delta-G solvation = -21069.389511 eV Core-core repulsion = 17847.455690 eV Total energy + Delta-G solvation = -3221.933821 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.70240 -40.14360 -37.90676 -36.91947 -35.65991 -34.08526 -33.42481 -31.58776 -28.98900 -27.62648 -27.18638 -24.49419 -23.52086 -22.36834 -21.99889 -21.28166 -19.14154 -18.54293 -17.98275 -17.52262 -16.79515 -16.51363 -16.43694 -16.15055 -15.70138 -15.34827 -15.01007 -14.61148 -14.39747 -14.24324 -13.92944 -13.82580 -13.52269 -13.23279 -13.00766 -12.81020 -12.71452 -12.58447 -12.46937 -12.33745 -11.95763 -11.90143 -11.57886 -11.56802 -11.40122 -11.14163 -10.55724 -9.76143 -9.63932 -9.50198 -8.20525 -6.31603 0.29621 0.48574 1.23298 1.39637 1.41633 1.52963 1.96078 2.40943 2.79811 3.11067 3.12563 3.50007 3.91429 4.06074 4.08824 4.17610 4.21698 4.29569 4.39220 4.50486 4.63828 4.67074 4.85553 4.86946 4.91809 4.99202 5.02824 5.12248 5.21262 5.37837 5.46635 5.53339 5.60269 5.62147 5.67249 5.72872 5.83279 5.85365 6.10307 6.24480 6.27726 6.84776 7.03623 7.37510 8.91600 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025236 B = 0.003400 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.250069 B = 8232.243603 C = 8705.858406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.066 4.066 3 C -0.128 4.128 4 C -0.109 4.109 5 C -0.135 4.135 6 C -0.111 4.111 7 C -0.114 4.114 8 C 0.143 3.857 9 H 0.101 0.899 10 N -0.674 5.674 11 C 0.074 3.926 12 C -0.090 4.090 13 C 0.026 3.974 14 C -0.543 4.543 15 H 0.060 0.940 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.967 3.033 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.265 1.265 22 C 0.486 3.514 23 O -0.530 6.530 24 O -0.503 6.503 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.140 0.860 31 H 0.126 0.874 32 H 0.362 0.638 33 H 0.039 0.961 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.059 0.941 37 H -0.004 1.004 38 H -0.013 1.013 39 H 0.264 0.736 40 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.763 25.282 -8.439 26.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.067 4.067 3 C -0.146 4.146 4 C -0.127 4.127 5 C -0.153 4.153 6 C -0.130 4.130 7 C -0.114 4.114 8 C 0.031 3.969 9 H 0.118 0.882 10 N -0.309 5.309 11 C -0.055 4.055 12 C -0.128 4.128 13 C -0.012 4.012 14 C -0.581 4.581 15 H 0.078 0.922 16 C -0.199 4.199 17 N -0.574 5.574 18 Si 0.791 3.209 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.189 1.189 22 C 0.327 3.673 23 O -0.419 6.419 24 O -0.316 6.316 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.165 0.835 29 H 0.166 0.834 30 H 0.158 0.842 31 H 0.144 0.856 32 H 0.185 0.815 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.015 0.985 38 H 0.005 0.995 39 H 0.073 0.927 40 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 1.930 24.688 -8.726 26.256 hybrid contribution -0.217 -1.057 0.457 1.172 sum 1.713 23.631 -8.270 25.095 Atomic orbital electron populations 1.21012 0.89919 1.04385 1.02892 1.19977 0.97160 0.92054 0.97466 1.21337 0.94608 0.97783 1.00846 1.21556 0.94545 0.98821 0.97785 1.21393 1.01043 0.92052 1.00788 1.21220 0.93484 0.99474 0.98790 1.19322 0.93986 0.92033 1.06075 1.19793 0.97606 0.89781 0.89675 0.88205 1.59949 1.21086 1.10161 1.39728 1.21918 0.95053 0.91682 0.96836 1.21336 0.97792 0.94914 0.98768 1.18957 0.94809 0.93158 0.94240 1.21689 0.93710 1.05141 1.37595 0.92200 1.26006 0.96581 1.00827 0.96535 1.70098 1.11969 1.29549 1.45815 0.85418 0.78773 0.77752 0.78926 1.19450 1.20725 1.18888 1.23491 0.74248 0.80535 0.89007 1.90738 1.51747 1.26786 1.72592 1.84487 1.64231 1.51116 1.31813 0.90452 0.90816 0.89656 0.83485 0.83403 0.84223 0.85644 0.81463 0.94277 0.92998 0.93385 0.92250 0.98544 0.99502 0.92744 0.71464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 9.09 71.24 0.65 -1.21 16 2 C -0.07 -1.21 5.82 -19.86 -0.12 -1.32 16 3 C -0.13 -1.92 9.70 22.27 0.22 -1.71 16 4 C -0.11 -1.59 10.05 22.27 0.22 -1.37 16 5 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 6 C -0.11 -2.44 8.86 22.27 0.20 -2.24 16 7 C -0.11 -2.52 4.85 -19.86 -0.10 -2.62 16 8 C 0.14 3.67 2.08 43.43 0.09 3.76 16 9 H 0.10 2.35 6.65 -2.39 -0.02 2.33 16 10 N -0.67 -20.48 5.10 -499.35 -2.55 -23.03 16 11 C 0.07 2.69 5.38 86.30 0.46 3.16 16 12 C -0.09 -3.92 5.41 30.59 0.17 -3.76 16 13 C 0.03 1.43 4.97 29.85 0.15 1.58 16 14 C -0.54 -32.05 9.11 25.60 0.23 -31.82 16 15 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 16 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 17 N -0.93 -58.18 13.29 21.45 0.28 -57.90 16 18 Si 0.97 45.35 29.54 68.60 2.03 47.37 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 22 C 0.49 13.51 7.44 71.24 0.53 14.04 16 23 O -0.53 -19.46 16.68 21.95 0.37 -19.09 16 24 O -0.50 -9.62 11.05 -51.38 -0.57 -10.18 16 25 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.07 1.23 4.55 -2.39 -0.01 1.22 16 27 H 0.08 0.95 8.08 -2.38 -0.02 0.93 16 28 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 29 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 30 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 31 H 0.13 2.95 6.97 -2.91 -0.02 2.93 16 32 H 0.36 9.79 7.26 -89.69 -0.65 9.14 16 33 H 0.04 1.34 8.06 -2.39 -0.02 1.32 16 34 H 0.05 2.09 7.62 -2.39 -0.02 2.08 16 35 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 39 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 40 H 0.42 4.74 9.10 -74.06 -0.67 4.07 16 Total: -1.00 -74.51 334.48 2.68 -71.82 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -0.27 Total: 16.30 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: 3.39 Total: -25.29 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -2.26 Total: -80.93 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.20 Total: -29.27 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -74.51 2.68 -71.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600568664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.698 kcal (2) G-P(sol) polarization free energy of solvation -74.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds