Wall clock time and date at job start Mon Mar 30 2020 01:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00118 * 2 1 4 4 H 1.48500 * 109.47368 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46997 * 299.99933 * 3 2 1 6 6 H 1.48497 * 109.47281 * 59.99316 * 3 2 1 7 7 C 1.37875 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00008 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00255 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47254 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99973 * 175.01445 * 10 9 7 12 12 H 1.08996 * 109.46972 * 38.30736 * 11 10 9 13 13 C 1.52992 * 109.46908 * 278.30342 * 11 10 9 14 14 C 1.53003 * 109.47046 * 174.28615 * 13 11 10 15 15 C 1.50700 * 109.47387 * 185.46502 * 14 13 11 16 16 O 1.20826 * 120.00051 * 359.97438 * 15 14 13 17 17 O 1.34228 * 120.00142 * 179.97438 * 15 14 13 18 18 C 1.52998 * 109.47062 * 158.30537 * 11 10 9 19 19 C 1.50703 * 109.47311 * 294.99995 * 18 11 10 20 20 C 1.38239 * 120.00032 * 89.99765 * 19 18 11 21 21 C 1.38231 * 119.99710 * 180.02562 * 20 19 18 22 22 C 1.38229 * 120.00624 * 0.02562 * 21 20 19 23 23 C 1.38240 * 119.99834 * 0.25399 * 22 21 20 24 24 C 1.38233 * 120.00096 * 269.97744 * 19 18 11 25 25 H 0.97002 * 120.00534 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47016 * 59.99912 * 9 7 2 27 27 H 1.08995 * 109.47054 * 300.00105 * 9 7 2 28 28 H 1.00902 * 111.00272 * 298.96709 * 10 9 7 29 29 H 1.09000 * 109.47571 * 294.28157 * 13 11 10 30 30 H 1.08998 * 109.47453 * 54.28649 * 13 11 10 31 31 H 1.09000 * 109.47354 * 305.46435 * 14 13 11 32 32 H 1.09005 * 109.47147 * 65.46126 * 14 13 11 33 33 H 0.96698 * 117.00127 * 179.97438 * 17 15 14 34 34 H 1.08993 * 109.47224 * 174.99743 * 18 11 10 35 35 H 1.09001 * 109.47221 * 54.99996 * 18 11 10 36 36 H 1.08002 * 119.99859 * 359.97438 * 20 19 18 37 37 H 1.08004 * 119.99999 * 179.97438 * 21 20 19 38 38 H 1.08001 * 120.00462 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.00440 * 179.72521 * 23 22 21 40 40 H 1.07999 * 120.00043 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5092 -4.9037 0.1197 12 1 0.5869 -4.8731 -0.4603 13 6 1.1788 -5.1707 1.5895 14 6 0.3304 -6.4392 1.6993 15 6 -0.1073 -6.6287 3.1288 16 8 0.2255 -5.8313 3.9733 17 8 -0.8670 -7.6834 3.4639 18 6 2.4090 -6.0211 -0.4119 19 6 2.6343 -5.8249 -1.8890 20 6 3.7040 -5.0688 -2.3306 21 6 3.9102 -4.8884 -3.6855 22 6 3.0467 -5.4635 -4.5988 23 6 1.9736 -6.2149 -4.1571 24 6 1.7715 -6.4013 -2.8023 25 1 -0.4851 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8902 28 1 2.7873 -3.5942 -0.8236 29 1 2.1033 -5.3023 2.1517 30 1 0.6233 -4.3257 1.9964 31 1 -0.5474 -6.3457 1.0599 32 1 0.9204 -7.2994 1.3828 33 1 -1.1226 -7.7628 4.3931 34 1 1.9297 -6.9852 -0.2423 35 1 3.3666 -5.9950 0.1083 36 1 4.3780 -4.6183 -1.6170 37 1 4.7457 -4.2973 -4.0306 38 1 3.2076 -5.3223 -5.6574 39 1 1.2963 -6.6606 -4.8705 40 1 0.9357 -6.9919 -2.4573 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605585925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:06 Heat of formation + Delta-G solvation = -86.180215 kcal Electronic energy + Delta-G solvation = -21121.851461 eV Core-core repulsion = 17900.496065 eV Total energy + Delta-G solvation = -3221.355396 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.20722 -39.32102 -36.90315 -36.02328 -33.35699 -32.22544 -31.54929 -30.71641 -28.29961 -25.86197 -25.18718 -22.49571 -22.13344 -21.16782 -21.00292 -19.52167 -17.97877 -16.77623 -16.53053 -16.24146 -16.03435 -15.18289 -15.01718 -14.79538 -14.49782 -13.98049 -13.63719 -13.28697 -12.99064 -12.83503 -12.57992 -12.35665 -11.98345 -11.71241 -11.63505 -11.49271 -11.33842 -11.10783 -10.84620 -10.81110 -10.55174 -10.54298 -10.45465 -10.22190 -9.79466 -9.13648 -8.75339 -8.48985 -8.43559 -7.27736 -5.98895 -4.00065 1.51259 1.55837 2.28294 3.08578 3.33716 3.40843 3.45901 3.93693 4.46338 4.84292 4.90343 5.00742 5.11537 5.13214 5.20362 5.27109 5.36344 5.37342 5.53395 5.58718 5.66185 5.77209 5.77814 5.88845 6.05884 6.19742 6.20986 6.23806 6.49261 6.54776 6.60664 6.66645 6.77088 6.81441 7.17016 7.30296 7.44287 7.83704 7.93744 8.17669 8.45779 8.64415 9.08885 9.64486 11.12259 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.008559 B = 0.006597 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3270.568352 B = 4243.062720 C = 7019.070741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.686 5.686 11 C 0.094 3.906 12 H 0.037 0.963 13 C -0.098 4.098 14 C -0.114 4.114 15 C 0.475 3.525 16 O -0.509 6.509 17 O -0.524 6.524 18 C -0.087 4.087 19 C -0.078 4.078 20 C -0.113 4.113 21 C -0.116 4.116 22 C -0.129 4.129 23 C -0.121 4.121 24 C -0.120 4.120 25 H 0.260 0.740 26 H -0.015 1.015 27 H 0.029 0.971 28 H 0.332 0.668 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.406 0.594 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.182 -17.280 -3.252 17.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.319 5.319 11 C -0.017 4.017 12 H 0.055 0.945 13 C -0.136 4.136 14 C -0.152 4.152 15 C 0.317 3.683 16 O -0.396 6.396 17 O -0.336 6.336 18 C -0.125 4.125 19 C -0.078 4.078 20 C -0.131 4.131 21 C -0.134 4.134 22 C -0.147 4.147 23 C -0.139 4.139 24 C -0.138 4.138 25 H 0.069 0.931 26 H 0.002 0.998 27 H 0.047 0.953 28 H 0.152 0.848 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.264 0.736 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.376 -16.830 -2.762 17.220 hybrid contribution -0.332 0.913 -0.305 1.018 sum 2.043 -15.917 -3.067 16.338 Atomic orbital electron populations 1.69971 1.06055 1.26569 1.51217 1.24982 0.94859 0.99312 0.95475 0.86455 0.80096 0.83496 0.77449 1.19661 1.21168 1.21026 1.21202 0.93523 0.90190 1.49836 0.91989 1.19583 0.90532 0.87458 0.95661 1.60707 1.24688 1.00946 1.45514 1.21361 0.95334 0.90778 0.94199 0.94511 1.21445 0.99828 0.95154 0.97153 1.21513 1.02485 1.01944 0.89249 1.23726 0.74435 0.77456 0.92648 1.90758 1.53171 1.43526 1.52123 1.84549 1.65537 1.47772 1.35752 1.20936 1.01558 0.98861 0.91100 1.19956 0.95045 0.97084 0.95732 1.21178 0.97903 0.98155 0.95855 1.21153 0.99530 0.99332 0.93352 1.21095 0.95650 0.98584 0.99375 1.21081 0.97845 0.99385 0.95639 1.21016 0.99112 1.00580 0.93049 0.93053 0.99769 0.95292 0.84812 0.90677 0.90028 0.87820 0.87864 0.73590 0.90866 0.90092 0.85427 0.86162 0.86521 0.86486 0.86373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.51 -14.63 9.36 -34.44 -0.32 -14.96 16 8 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 9 C 0.19 5.13 5.23 -4.97 -0.03 5.10 16 10 N -0.69 -14.49 6.26 -108.00 -0.68 -15.16 16 11 C 0.09 1.57 2.09 -67.72 -0.14 1.43 16 12 H 0.04 0.65 7.91 -51.93 -0.41 0.24 16 13 C -0.10 -1.56 4.26 -26.73 -0.11 -1.67 16 14 C -0.11 -1.36 5.45 -27.88 -0.15 -1.51 16 15 C 0.48 6.24 8.33 36.01 0.30 6.54 16 16 O -0.51 -8.73 16.67 -18.75 -0.31 -9.04 16 17 O -0.52 -5.22 13.42 -39.25 -0.53 -5.75 16 18 C -0.09 -1.14 4.87 -27.88 -0.14 -1.28 16 19 C -0.08 -1.08 4.82 -104.62 -0.50 -1.59 16 20 C -0.11 -1.60 8.02 -39.58 -0.32 -1.91 16 21 C -0.12 -1.52 10.05 -39.59 -0.40 -1.91 16 22 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 23 C -0.12 -1.49 10.05 -39.58 -0.40 -1.88 16 24 C -0.12 -1.54 9.70 -39.58 -0.38 -1.92 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H -0.02 -0.44 8.14 -51.93 -0.42 -0.86 16 27 H 0.03 0.82 7.04 -51.93 -0.37 0.46 16 28 H 0.33 6.77 5.64 -39.29 -0.22 6.55 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.08 1.60 6.86 -51.93 -0.36 1.24 16 31 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.10 0.95 6.75 -51.93 -0.35 0.60 16 33 H 0.41 2.40 9.10 45.56 0.41 2.81 16 34 H 0.07 0.77 6.43 -51.93 -0.33 0.43 16 35 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 36 H 0.13 1.76 7.60 -52.49 -0.40 1.36 16 37 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 40 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 336.41 15.07 5.07 5.07 Total: -1.00 -34.18 336.41 -8.77 -42.94 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -4.95 Total: 7.46 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -3.09 Total: -16.05 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.06 Total: -41.70 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.84 Total: -14.79 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.18 -8.77 -42.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605585925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.240 kcal (2) G-P(sol) polarization free energy of solvation -34.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds