Wall clock time and date at job start Mon Mar 30 2020 02:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37968 * 120.07834 * 2 1 4 4 C 1.38346 * 120.14728 * 180.30184 * 3 2 1 5 5 C 1.38394 * 120.30259 * 359.72824 * 4 3 2 6 6 C 1.50699 * 119.92001 * 179.97438 * 5 4 3 7 7 N 1.46896 * 109.47355 * 270.01695 * 6 5 4 8 8 C 1.46907 * 111.00243 * 293.96246 * 7 6 5 9 9 C 1.46897 * 111.00300 * 169.99989 * 7 6 5 10 10 H 1.08993 * 109.47286 * 310.00430 * 9 7 6 11 11 C 1.53000 * 109.46763 * 70.00418 * 9 7 6 12 12 C 1.50703 * 109.47151 * 190.00141 * 9 7 6 13 13 H 1.07992 * 120.00190 * 0.02562 * 12 9 7 14 14 C 1.37882 * 119.99754 * 180.02562 * 12 9 7 15 15 N 1.31511 * 120.00014 * 179.97438 * 14 12 9 16 16 Si 1.86800 * 119.99815 * 0.02562 * 14 12 9 17 17 H 1.48498 * 109.46968 * 90.00456 * 16 14 12 18 18 H 1.48500 * 109.46613 * 209.99780 * 16 14 12 19 19 H 1.48492 * 109.47578 * 329.99915 * 16 14 12 20 20 C 1.37919 * 120.14980 * 359.97438 * 5 4 3 21 21 C 1.39609 * 120.07421 * 179.75115 * 2 1 3 22 22 C 1.47726 * 120.14825 * 359.97240 * 21 2 1 23 23 O 1.21475 * 119.99918 * 353.50405 * 22 21 2 24 24 O 1.34710 * 119.99866 * 173.50793 * 22 21 2 25 25 H 1.08999 * 109.47145 * 263.67571 * 1 2 3 26 26 H 1.08999 * 109.46879 * 23.67254 * 1 2 3 27 27 H 1.08995 * 109.47104 * 143.67136 * 1 2 3 28 28 H 1.07997 * 119.92712 * 0.02562 * 3 2 1 29 29 H 1.07998 * 119.84468 * 179.69775 * 4 3 2 30 30 H 1.08996 * 109.47518 * 30.02318 * 6 5 4 31 31 H 1.09000 * 109.46720 * 150.02248 * 6 5 4 32 32 H 1.08994 * 109.47417 * 59.99098 * 8 7 6 33 33 H 1.08996 * 109.47294 * 180.02562 * 8 7 6 34 34 H 1.09001 * 109.46365 * 299.99300 * 8 7 6 35 35 H 1.09005 * 109.47644 * 60.00082 * 11 9 7 36 36 H 1.08999 * 109.47192 * 180.02562 * 11 9 7 37 37 H 1.09005 * 109.47555 * 300.00064 * 11 9 7 38 38 H 0.97002 * 120.00529 * 179.97438 * 15 14 12 39 39 H 1.08005 * 120.07307 * 180.02562 * 20 5 4 40 40 H 0.96704 * 117.00148 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5820 1.1956 -0.0063 5 6 4.2817 0.0016 -0.0070 6 6 5.7886 0.0134 -0.0144 7 7 6.2715 0.0145 -1.4018 8 6 5.9284 -1.2429 -2.0796 9 6 7.7181 0.2640 -1.4556 10 1 7.9579 1.1423 -0.8564 11 6 8.4659 -0.9507 -0.9022 12 6 8.1341 0.5018 -2.8844 13 1 7.3974 0.4711 -3.6735 14 6 9.4552 0.7585 -3.1842 15 7 9.8183 0.9655 -4.4311 16 14 10.7294 0.8108 -1.8193 17 1 11.2969 -0.5469 -1.6197 18 1 11.8162 1.7515 -2.1926 19 1 10.0884 1.2693 -0.5608 20 6 3.6030 -1.1991 -0.0008 21 6 2.2067 -1.2081 0.0052 22 6 1.4730 -2.4903 0.0114 23 8 0.2642 -2.4978 0.1310 24 8 2.1445 -3.6512 -0.1154 25 1 -0.3633 -0.1132 1.0214 26 1 -0.3633 0.9412 -0.4126 27 1 -0.3633 -0.8279 -0.6088 28 1 1.6586 2.1292 0.0004 29 1 4.1183 2.1330 -0.0112 30 1 6.1475 0.9072 0.4959 31 1 6.1614 -0.8727 0.4993 32 1 4.8457 -1.3684 -2.0864 33 1 6.2979 -1.2156 -3.1047 34 1 6.3876 -2.0778 -1.5504 35 1 8.2262 -1.8291 -1.5014 36 1 9.5393 -0.7655 -0.9416 37 1 8.1651 -1.1228 0.1313 38 1 10.7477 1.1465 -4.6420 39 1 4.1504 -2.1302 -0.0009 40 1 1.6214 -4.4644 -0.1054 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607777244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:17 Heat of formation + Delta-G solvation = -52.285030 kcal Electronic energy + Delta-G solvation = -21536.911832 eV Core-core repulsion = 18317.026241 eV Total energy + Delta-G solvation = -3219.885591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.67789 -39.10146 -37.32067 -36.25849 -33.53694 -32.19229 -31.44036 -29.86018 -28.06058 -26.07818 -25.26331 -24.29807 -23.13603 -22.17536 -20.26098 -19.29203 -18.17570 -16.96538 -16.57293 -15.88964 -15.70415 -15.48208 -15.24930 -14.62278 -14.22849 -13.87590 -13.58891 -13.36403 -13.27058 -12.95396 -12.55602 -12.33169 -12.22085 -12.02138 -11.77069 -11.63814 -11.49032 -11.27362 -11.18154 -11.08933 -10.71777 -10.34369 -10.17992 -10.03825 -9.55892 -9.10998 -9.02040 -8.63341 -8.54716 -7.38797 -6.07898 -4.06098 0.68873 1.32276 2.48196 2.91950 3.23797 3.33409 3.36632 3.70038 4.37588 4.65606 4.73861 4.89803 5.00057 5.05207 5.17143 5.24496 5.45792 5.61865 5.62740 5.64592 5.74575 5.91339 5.96553 6.05940 6.07412 6.18313 6.22992 6.25332 6.28437 6.36638 6.48861 6.51793 6.62170 6.70841 6.85701 6.86843 7.14988 7.60038 7.77497 7.88615 8.01825 8.63622 9.00530 9.53905 11.05246 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030059 B = 0.004064 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.286680 B = 6887.466620 C = 7224.583161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.025 4.025 3 C -0.137 4.137 4 C -0.054 4.054 5 C -0.083 4.083 6 C 0.085 3.915 7 N -0.517 5.517 8 C 0.029 3.971 9 C 0.181 3.819 10 H 0.040 0.960 11 C -0.187 4.187 12 C -0.501 4.501 13 H 0.082 0.918 14 C 0.070 3.930 15 N -0.899 5.899 16 Si 0.886 3.114 17 H -0.281 1.281 18 H -0.297 1.297 19 H -0.269 1.269 20 C -0.050 4.050 21 C -0.141 4.141 22 C 0.528 3.472 23 O -0.516 6.516 24 O -0.512 6.512 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.079 0.921 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.018 0.982 35 H 0.057 0.943 36 H 0.045 0.955 37 H 0.028 0.972 38 H 0.264 0.736 39 H 0.134 0.866 40 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.864 -4.534 11.310 19.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.026 4.026 3 C -0.155 4.155 4 C -0.073 4.073 5 C -0.084 4.084 6 C -0.043 4.043 7 N -0.240 5.240 8 C -0.119 4.119 9 C 0.073 3.927 10 H 0.057 0.943 11 C -0.246 4.246 12 C -0.539 4.539 13 H 0.100 0.900 14 C -0.132 4.132 15 N -0.538 5.538 16 Si 0.717 3.283 17 H -0.208 1.208 18 H -0.224 1.224 19 H -0.194 1.194 20 C -0.069 4.069 21 C -0.142 4.142 22 C 0.375 3.625 23 O -0.406 6.406 24 O -0.323 6.323 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.107 0.893 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.152 0.848 40 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -15.020 -3.744 10.953 18.963 hybrid contribution 1.031 -1.252 1.047 1.930 sum -13.989 -4.996 11.999 19.096 Atomic orbital electron populations 1.21078 0.90252 1.03088 1.03268 1.19948 0.96504 0.91366 0.94772 1.20996 0.94207 0.97174 1.03105 1.21381 0.93707 0.98447 0.93717 1.19921 0.96460 0.92474 0.99498 1.21098 0.89335 1.01284 0.92534 1.62215 1.16826 1.33746 1.11217 1.22359 0.98958 0.89784 1.00798 1.19813 0.82009 0.92595 0.98243 0.94267 1.22838 1.00919 1.02475 0.98334 1.20920 0.94185 1.47783 0.91018 0.89992 1.24915 0.98211 0.94902 0.95173 1.69876 1.17513 1.48853 1.17548 0.86891 0.81439 0.77142 0.82827 1.20816 1.22441 1.19385 1.21354 0.92337 0.98716 0.94485 1.18782 0.93452 0.89619 1.12316 1.20979 0.85288 0.84329 0.71954 1.90825 1.15351 1.87732 1.46740 1.84606 1.45399 1.17100 1.85193 0.90818 0.92054 0.89252 0.85167 0.84963 0.90258 0.94433 0.93272 0.90138 0.96387 0.92370 0.93678 0.95331 0.92631 0.84829 0.73022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 8.73 36.01 0.31 -0.99 16 2 C -0.03 -0.31 5.92 -104.21 -0.62 -0.93 16 3 C -0.14 -1.59 9.66 -39.64 -0.38 -1.97 16 4 C -0.05 -0.70 9.69 -39.48 -0.38 -1.08 16 5 C -0.08 -1.18 4.88 -104.68 -0.51 -1.69 16 6 C 0.09 1.36 4.69 -4.98 -0.02 1.34 16 7 N -0.52 -10.20 4.69 -237.74 -1.12 -11.32 16 8 C 0.03 0.54 8.26 60.07 0.50 1.04 16 9 C 0.18 4.11 1.90 -68.86 -0.13 3.98 16 10 H 0.04 0.92 6.99 -51.93 -0.36 0.56 16 11 C -0.19 -3.93 7.92 37.16 0.29 -3.64 16 12 C -0.50 -13.66 8.49 -34.44 -0.29 -13.95 16 13 H 0.08 2.46 7.37 -52.49 -0.39 2.08 16 14 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 15 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 16 Si 0.89 21.47 24.37 -169.99 -4.14 17.33 16 17 H -0.28 -6.67 6.87 56.52 0.39 -6.29 16 18 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.27 -6.19 6.53 56.52 0.37 -5.82 16 20 C -0.05 -0.68 7.52 -39.17 -0.29 -0.97 16 21 C -0.14 -1.84 5.87 -104.98 -0.62 -2.46 16 22 C 0.53 6.55 8.20 34.61 0.28 6.83 16 23 O -0.52 -7.06 14.14 -19.25 -0.27 -7.33 16 24 O -0.51 -5.04 12.70 -40.52 -0.51 -5.55 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.55 8.04 -51.93 -0.42 0.13 16 27 H 0.09 1.08 5.87 -51.93 -0.30 0.77 16 28 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 29 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 30 H 0.08 1.21 7.87 -51.93 -0.41 0.80 16 31 H 0.04 0.58 7.00 -51.93 -0.36 0.21 16 32 H 0.05 0.83 6.17 -51.93 -0.32 0.51 16 33 H 0.08 1.69 6.76 -51.93 -0.35 1.34 16 34 H 0.02 0.31 6.46 -51.93 -0.34 -0.02 16 35 H 0.06 1.21 6.42 -51.93 -0.33 0.87 16 36 H 0.04 1.00 3.27 -51.93 -0.17 0.83 16 37 H 0.03 0.51 6.91 -51.93 -0.36 0.16 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.13 1.73 7.60 -52.48 -0.40 1.33 16 40 H 0.41 2.06 9.11 45.56 0.42 2.47 16 LS Contribution 315.95 15.07 4.76 4.76 Total: -1.00 -31.54 315.95 -7.02 -38.56 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -4.55 Total: 2.46 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -1.96 Total: -12.61 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: -0.34 Total: -37.61 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -0.79 Total: -12.89 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.14 Total: 17.33 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.54 -7.02 -38.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607777244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.725 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds