Wall clock time and date at job start Mon Mar 30 2020 02:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37968 * 120.07834 * 2 1 4 4 C 1.38346 * 120.14728 * 180.30184 * 3 2 1 5 5 C 1.38394 * 120.30259 * 359.72824 * 4 3 2 6 6 C 1.50699 * 119.92001 * 179.97438 * 5 4 3 7 7 N 1.46896 * 109.47355 * 270.01695 * 6 5 4 8 8 C 1.46907 * 111.00243 * 293.96246 * 7 6 5 9 9 C 1.46897 * 111.00300 * 169.99989 * 7 6 5 10 10 H 1.08993 * 109.47286 * 310.00430 * 9 7 6 11 11 C 1.53000 * 109.46763 * 70.00418 * 9 7 6 12 12 C 1.50703 * 109.47151 * 190.00141 * 9 7 6 13 13 H 1.07992 * 120.00190 * 0.02562 * 12 9 7 14 14 C 1.37882 * 119.99754 * 180.02562 * 12 9 7 15 15 N 1.31511 * 120.00014 * 179.97438 * 14 12 9 16 16 Si 1.86800 * 119.99815 * 0.02562 * 14 12 9 17 17 H 1.48498 * 109.46968 * 90.00456 * 16 14 12 18 18 H 1.48500 * 109.46613 * 209.99780 * 16 14 12 19 19 H 1.48492 * 109.47578 * 329.99915 * 16 14 12 20 20 C 1.37919 * 120.14980 * 359.97438 * 5 4 3 21 21 C 1.39609 * 120.07421 * 179.75115 * 2 1 3 22 22 C 1.47726 * 120.14825 * 359.97240 * 21 2 1 23 23 O 1.21475 * 119.99918 * 353.50405 * 22 21 2 24 24 O 1.34710 * 119.99866 * 173.50793 * 22 21 2 25 25 H 1.08999 * 109.47145 * 263.67571 * 1 2 3 26 26 H 1.08999 * 109.46879 * 23.67254 * 1 2 3 27 27 H 1.08995 * 109.47104 * 143.67136 * 1 2 3 28 28 H 1.07997 * 119.92712 * 0.02562 * 3 2 1 29 29 H 1.07998 * 119.84468 * 179.69775 * 4 3 2 30 30 H 1.08996 * 109.47518 * 30.02318 * 6 5 4 31 31 H 1.09000 * 109.46720 * 150.02248 * 6 5 4 32 32 H 1.08994 * 109.47417 * 59.99098 * 8 7 6 33 33 H 1.08996 * 109.47294 * 180.02562 * 8 7 6 34 34 H 1.09001 * 109.46365 * 299.99300 * 8 7 6 35 35 H 1.09005 * 109.47644 * 60.00082 * 11 9 7 36 36 H 1.08999 * 109.47192 * 180.02562 * 11 9 7 37 37 H 1.09005 * 109.47555 * 300.00064 * 11 9 7 38 38 H 0.97002 * 120.00529 * 179.97438 * 15 14 12 39 39 H 1.08005 * 120.07307 * 180.02562 * 20 5 4 40 40 H 0.96704 * 117.00148 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5820 1.1956 -0.0063 5 6 4.2817 0.0016 -0.0070 6 6 5.7886 0.0134 -0.0144 7 7 6.2715 0.0145 -1.4018 8 6 5.9284 -1.2429 -2.0796 9 6 7.7181 0.2640 -1.4556 10 1 7.9579 1.1423 -0.8564 11 6 8.4659 -0.9507 -0.9022 12 6 8.1341 0.5018 -2.8844 13 1 7.3974 0.4711 -3.6735 14 6 9.4552 0.7585 -3.1842 15 7 9.8183 0.9655 -4.4311 16 14 10.7294 0.8108 -1.8193 17 1 11.2969 -0.5469 -1.6197 18 1 11.8162 1.7515 -2.1926 19 1 10.0884 1.2693 -0.5608 20 6 3.6030 -1.1991 -0.0008 21 6 2.2067 -1.2081 0.0052 22 6 1.4730 -2.4903 0.0114 23 8 0.2642 -2.4978 0.1310 24 8 2.1445 -3.6512 -0.1154 25 1 -0.3633 -0.1132 1.0214 26 1 -0.3633 0.9412 -0.4126 27 1 -0.3633 -0.8279 -0.6088 28 1 1.6586 2.1292 0.0004 29 1 4.1183 2.1330 -0.0112 30 1 6.1475 0.9072 0.4959 31 1 6.1614 -0.8727 0.4993 32 1 4.8457 -1.3684 -2.0864 33 1 6.2979 -1.2156 -3.1047 34 1 6.3876 -2.0778 -1.5504 35 1 8.2262 -1.8291 -1.5014 36 1 9.5393 -0.7655 -0.9416 37 1 8.1651 -1.1228 0.1313 38 1 10.7477 1.1465 -4.6420 39 1 4.1504 -2.1302 -0.0009 40 1 1.6214 -4.4644 -0.1054 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607777244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:16 Heat of formation + Delta-G solvation = -74.184505 kcal Electronic energy + Delta-G solvation = -21537.861465 eV Core-core repulsion = 18317.026241 eV Total energy + Delta-G solvation = -3220.835223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.61495 -40.16372 -38.73879 -37.16247 -35.05034 -33.82403 -32.39616 -31.45559 -29.27260 -27.33699 -27.19242 -25.30334 -24.55530 -23.10150 -21.49254 -20.79893 -19.07719 -18.66830 -17.87613 -17.13333 -16.83332 -16.53806 -16.45195 -16.23702 -15.52452 -15.31434 -14.75585 -14.51883 -14.43048 -14.23303 -14.11730 -13.83789 -13.34808 -13.28015 -12.95412 -12.86412 -12.73600 -12.68137 -12.50959 -12.44233 -12.09485 -12.02238 -11.72253 -11.41298 -11.16785 -11.05328 -10.73048 -9.99628 -9.60626 -8.90069 -8.24269 -6.26791 -0.27640 0.33915 1.32816 1.38261 1.48372 1.53489 2.10523 2.34944 2.69481 3.10370 3.43758 3.75075 3.79557 4.00471 4.10111 4.20385 4.44137 4.45987 4.51713 4.54854 4.63437 4.65586 4.74913 4.77999 4.82285 4.84768 4.86359 5.01793 5.05319 5.13939 5.24562 5.31416 5.45679 5.52715 5.60997 5.63658 5.67664 5.90849 6.06951 6.41170 6.72197 6.80050 6.98754 7.37780 8.92779 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030059 B = 0.004064 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.286680 B = 6887.466620 C = 7224.583161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.031 4.031 3 C -0.132 4.132 4 C -0.060 4.060 5 C -0.098 4.098 6 C 0.089 3.911 7 N -0.534 5.534 8 C 0.039 3.961 9 C 0.184 3.816 10 H 0.039 0.961 11 C -0.182 4.182 12 C -0.500 4.500 13 H 0.036 0.964 14 C 0.011 3.989 15 N -0.951 5.951 16 Si 0.950 3.050 17 H -0.270 1.270 18 H -0.301 1.301 19 H -0.244 1.244 20 C -0.052 4.052 21 C -0.154 4.154 22 C 0.531 3.469 23 O -0.533 6.533 24 O -0.509 6.509 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.157 0.843 29 H 0.141 0.859 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.031 0.969 35 H 0.054 0.946 36 H 0.036 0.964 37 H 0.062 0.938 38 H 0.264 0.736 39 H 0.137 0.863 40 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.549 -4.748 13.816 21.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.031 4.031 3 C -0.150 4.150 4 C -0.079 4.079 5 C -0.099 4.099 6 C -0.038 4.038 7 N -0.257 5.257 8 C -0.109 4.109 9 C 0.076 3.924 10 H 0.057 0.943 11 C -0.241 4.241 12 C -0.539 4.539 13 H 0.054 0.946 14 C -0.186 4.186 15 N -0.592 5.592 16 Si 0.778 3.222 17 H -0.197 1.197 18 H -0.229 1.229 19 H -0.168 1.168 20 C -0.071 4.071 21 C -0.156 4.156 22 C 0.377 3.623 23 O -0.426 6.426 24 O -0.323 6.323 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.175 0.825 29 H 0.158 0.842 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.155 0.845 40 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -15.734 -3.991 13.482 21.101 hybrid contribution 1.090 -1.213 0.211 1.645 sum -14.643 -5.204 13.693 20.713 Atomic orbital electron populations 1.21056 0.89217 1.03620 1.03374 1.20255 0.97389 0.91439 0.94037 1.21274 0.93799 0.98086 1.01827 1.21567 0.94438 0.98399 0.93469 1.19818 0.95475 0.93319 1.01257 1.21108 0.90548 1.02105 0.90033 1.62062 1.14958 1.34495 1.14159 1.22220 0.99916 0.89946 0.98847 1.19602 0.84285 0.93510 0.95015 0.94295 1.22711 0.99896 1.01201 1.00251 1.21177 0.93323 1.46657 0.92696 0.94555 1.25770 1.00612 0.94726 0.97500 1.70042 1.18050 1.51018 1.20134 0.85841 0.78409 0.77511 0.80468 1.19688 1.22936 1.16820 1.21360 0.92568 0.98623 0.94540 1.18987 0.93526 0.90477 1.12573 1.20891 0.84965 0.84794 0.71617 1.90822 1.15962 1.88099 1.47682 1.84558 1.45633 1.17523 1.84565 0.90401 0.90035 0.90628 0.82491 0.84157 0.89560 0.93357 0.91597 0.93676 0.95108 0.92719 0.94587 0.91876 0.92676 0.84531 0.70626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 8.73 71.24 0.62 -1.65 16 2 C -0.03 -0.69 5.92 -19.60 -0.12 -0.81 16 3 C -0.13 -2.73 9.66 22.23 0.21 -2.51 16 4 C -0.06 -1.42 9.69 22.33 0.22 -1.21 16 5 C -0.10 -2.59 4.88 -19.90 -0.10 -2.69 16 6 C 0.09 2.64 4.69 85.56 0.40 3.04 16 7 N -0.53 -20.51 4.69 -906.07 -4.25 -24.76 16 8 C 0.04 1.43 8.26 127.69 1.06 2.48 16 9 C 0.18 8.16 1.90 44.17 0.08 8.25 16 10 H 0.04 1.75 6.99 -2.39 -0.02 1.73 16 11 C -0.18 -7.19 7.92 71.98 0.57 -6.62 16 12 C -0.50 -27.89 8.49 25.60 0.22 -27.67 16 13 H 0.04 2.30 7.37 -2.91 -0.02 2.28 16 14 C 0.01 0.61 5.45 84.66 0.46 1.07 16 15 N -0.95 -59.13 13.96 21.45 0.30 -58.83 16 16 Si 0.95 43.86 24.37 68.60 1.67 45.53 16 17 H -0.27 -11.96 6.87 99.48 0.68 -11.27 16 18 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 19 H -0.24 -10.24 6.53 99.48 0.65 -9.59 16 20 C -0.05 -1.31 7.52 22.53 0.17 -1.14 16 21 C -0.15 -3.79 5.87 -20.10 -0.12 -3.91 16 22 C 0.53 12.34 8.20 70.33 0.58 12.92 16 23 O -0.53 -13.92 14.14 19.92 0.28 -13.64 16 24 O -0.51 -9.06 12.70 -56.20 -0.71 -9.77 16 25 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.08 1.23 8.04 -2.39 -0.02 1.21 16 27 H 0.08 1.72 5.87 -2.39 -0.01 1.71 16 28 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 29 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 30 H 0.09 2.41 7.87 -2.39 -0.02 2.39 16 31 H 0.05 1.33 7.00 -2.39 -0.02 1.31 16 32 H 0.07 2.17 6.17 -2.39 -0.01 2.15 16 33 H 0.04 1.95 6.76 -2.39 -0.02 1.94 16 34 H 0.03 1.03 6.46 -2.39 -0.02 1.02 16 35 H 0.05 2.17 6.42 -2.38 -0.02 2.15 16 36 H 0.04 1.48 3.27 -2.39 -0.01 1.48 16 37 H 0.06 2.05 6.91 -2.38 -0.02 2.03 16 38 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 39 H 0.14 3.26 7.60 -2.91 -0.02 3.24 16 40 H 0.43 3.44 9.11 -74.05 -0.67 2.76 16 Total: -1.00 -69.16 315.95 1.86 -67.30 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.31 Total: 14.61 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: 4.26 Total: -20.44 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -3.95 Total: -83.59 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.43 Total: -23.41 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.67 Total: 45.53 kcal Total: -69.16 1.86 -67.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607777244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.886 kcal (2) G-P(sol) polarization free energy of solvation -69.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds