Wall clock time and date at job start Mon Mar 30 2020 01:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38252 * 120.00110 * 2 1 4 4 C 1.38216 * 120.00041 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99697 * 0.27992 * 4 3 2 6 6 C 1.38209 * 120.00091 * 359.50482 * 5 4 3 7 7 C 1.50703 * 120.00265 * 180.25626 * 6 5 4 8 8 C 1.53007 * 109.47068 * 270.21858 * 7 6 5 9 9 C 1.53000 * 109.46650 * 179.97438 * 8 7 6 10 10 N 1.46502 * 109.46553 * 179.97438 * 9 8 7 11 11 C 1.36935 * 120.00289 * 269.99947 * 10 9 8 12 12 H 1.08007 * 119.99938 * 16.22756 * 11 10 9 13 13 C 1.38814 * 120.00445 * 196.22714 * 11 10 9 14 14 N 1.31617 * 119.99416 * 22.13481 * 13 11 10 15 15 Si 1.86793 * 120.00035 * 202.13313 * 13 11 10 16 16 H 1.48497 * 109.47632 * 0.02562 * 15 13 11 17 17 H 1.48509 * 109.46951 * 120.00098 * 15 13 11 18 18 H 1.48510 * 109.47139 * 239.99831 * 15 13 11 19 19 C 1.46501 * 119.99993 * 90.00679 * 10 9 8 20 20 C 1.50703 * 109.47232 * 84.00316 * 19 10 9 21 21 O 1.20821 * 119.99907 * 0.02562 * 20 19 10 22 22 O 1.34229 * 119.99787 * 179.97438 * 20 19 10 23 23 C 1.38217 * 119.99731 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47572 * 89.99809 * 1 2 3 25 25 H 1.08998 * 109.47468 * 210.00222 * 1 2 3 26 26 H 1.09001 * 109.47263 * 329.99603 * 1 2 3 27 27 H 1.07996 * 120.00445 * 359.97438 * 3 2 1 28 28 H 1.07998 * 120.00191 * 180.02562 * 4 3 2 29 29 H 1.08003 * 119.99739 * 179.72352 * 5 4 3 30 30 H 1.09007 * 109.46720 * 30.21293 * 7 6 5 31 31 H 1.08997 * 109.47390 * 150.21561 * 7 6 5 32 32 H 1.09000 * 109.46783 * 299.99707 * 8 7 6 33 33 H 1.08997 * 109.47258 * 59.99622 * 8 7 6 34 34 H 1.08994 * 109.47334 * 299.99847 * 9 8 7 35 35 H 1.09004 * 109.47275 * 60.00478 * 9 8 7 36 36 H 0.97008 * 119.99478 * 180.02562 * 14 13 11 37 37 H 1.08998 * 109.47029 * 204.00574 * 19 10 9 38 38 H 1.08998 * 109.46546 * 324.00518 * 19 10 9 39 39 H 0.96698 * 117.00132 * 179.97438 * 22 20 19 40 40 H 1.08001 * 120.00067 * 359.96999 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 -0.0001 -0.0048 6 6 3.5806 -1.1970 -0.0003 7 6 4.3340 -2.5022 -0.0002 8 6 4.5891 -2.9439 -1.4428 9 6 5.3545 -4.2687 -1.4426 10 7 5.5982 -4.6919 -2.8239 11 6 4.6854 -5.4829 -3.4688 12 1 3.6838 -5.5816 -3.0768 13 6 5.0471 -6.1581 -4.6265 14 7 6.3156 -6.4070 -4.8739 15 14 3.7336 -6.7135 -5.8329 16 1 2.3959 -6.3142 -5.3269 17 1 3.9731 -6.0770 -7.1531 18 1 3.7878 -8.1905 -5.9784 19 6 6.8187 -4.2688 -3.5151 20 6 7.9467 -5.2030 -3.1599 21 8 7.7511 -6.1275 -2.4071 22 8 9.1684 -5.0084 -3.6808 23 6 2.1980 -1.1970 -0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6583 2.1326 -0.0004 28 1 4.1204 2.1325 0.0010 29 1 5.3517 -0.0001 -0.0089 30 1 5.2865 -2.3719 0.5136 31 1 3.7449 -3.2618 0.5136 32 1 3.6367 -3.0742 -1.9566 33 1 5.1782 -2.1843 -1.9566 34 1 6.3069 -4.1380 -0.9289 35 1 4.7657 -5.0285 -0.9288 36 1 6.5685 -6.8785 -5.6831 37 1 6.6529 -4.2923 -4.5921 38 1 7.0766 -3.2549 -3.2091 39 1 9.8600 -5.6334 -3.4234 40 1 1.6579 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607849465.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:31 Heat of formation + Delta-G solvation = -79.626980 kcal Electronic energy + Delta-G solvation = -21090.450577 eV Core-core repulsion = 17869.379350 eV Total energy + Delta-G solvation = -3221.071227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.59382 -40.29816 -37.90371 -36.37618 -35.47549 -33.58647 -32.88962 -31.06208 -29.11105 -27.76833 -27.08345 -24.64129 -22.99314 -22.59819 -21.59239 -21.09748 -18.79681 -18.49844 -17.36509 -17.06447 -16.90135 -16.52005 -16.01698 -15.75563 -15.59260 -15.21890 -14.73738 -14.59618 -14.25461 -13.91733 -13.73585 -13.48529 -13.31708 -13.05515 -12.83467 -12.72205 -12.61142 -12.41144 -12.24967 -12.12047 -11.98727 -11.87024 -11.77631 -11.68577 -11.34502 -11.11406 -10.56477 -9.62297 -9.41468 -8.93968 -7.96506 -5.29199 0.52133 0.55681 1.46433 1.49215 1.59369 1.99553 2.47684 2.76886 2.90955 3.24712 3.57812 3.90420 3.97751 4.12200 4.24123 4.33229 4.52684 4.54541 4.59396 4.65672 4.67805 4.77478 4.84899 4.88039 4.93613 5.03143 5.04268 5.15359 5.24618 5.27518 5.32521 5.40127 5.59516 5.62568 5.64792 5.75638 5.84653 6.12697 6.21928 6.23865 7.03238 7.59057 7.80918 8.17775 9.13015 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017629 B = 0.004303 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.896710 B = 6505.053849 C = 7626.798387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.138 4.138 4 C -0.120 4.120 5 C -0.138 4.138 6 C -0.081 4.081 7 C -0.073 4.073 8 C -0.108 4.108 9 C 0.149 3.851 10 N -0.584 5.584 11 C -0.257 4.257 12 H 0.078 0.922 13 C -0.051 4.051 14 N -0.932 5.932 15 Si 0.969 3.031 16 H -0.267 1.267 17 H -0.286 1.286 18 H -0.301 1.301 19 C 0.188 3.812 20 C 0.481 3.519 21 O -0.558 6.558 22 O -0.533 6.533 23 C -0.137 4.137 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.129 0.871 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.041 0.959 35 H 0.038 0.962 36 H 0.249 0.751 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.401 0.599 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.333 15.394 8.790 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.156 4.156 4 C -0.138 4.138 5 C -0.156 4.156 6 C -0.082 4.082 7 C -0.111 4.111 8 C -0.148 4.148 9 C 0.024 3.976 10 N -0.304 5.304 11 C -0.387 4.387 12 H 0.096 0.904 13 C -0.246 4.246 14 N -0.579 5.579 15 Si 0.798 3.202 16 H -0.192 1.192 17 H -0.213 1.213 18 H -0.228 1.228 19 C 0.058 3.942 20 C 0.322 3.678 21 O -0.448 6.448 22 O -0.345 6.345 23 C -0.155 4.155 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.158 0.842 28 H 0.159 0.841 29 H 0.147 0.853 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.259 0.741 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.674 15.335 8.772 18.555 hybrid contribution 0.242 -1.520 -0.675 1.681 sum -5.432 13.815 8.096 16.909 Atomic orbital electron populations 1.20822 0.89796 1.03509 1.02796 1.20230 0.97316 0.93053 0.99028 1.21306 0.94545 0.98046 1.01730 1.21414 0.94649 0.98434 0.99271 1.21264 1.00536 0.92185 1.01583 1.20040 0.94008 0.95444 0.98664 1.20532 1.00131 0.93683 0.96739 1.21876 1.00117 0.97186 0.95594 1.20947 0.97553 0.94712 0.84417 1.44192 1.18526 1.56674 1.11040 1.19576 0.92074 1.21565 1.05458 0.90426 1.25531 0.97842 0.99247 1.01987 1.70023 1.16566 1.44761 1.26551 0.85177 0.79373 0.76508 0.79141 1.19167 1.21279 1.22848 1.20280 0.81968 0.92414 0.99493 1.25515 0.82237 0.85418 0.74601 1.90481 1.83119 1.33014 1.38147 1.84560 1.21454 1.58017 1.70453 1.21133 0.93888 0.98247 1.02235 0.90884 0.91296 0.90148 0.84228 0.84067 0.85285 0.90273 0.91046 0.93418 0.92515 0.94069 0.94351 0.94115 0.88976 0.89639 0.74098 0.86233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 10.01 71.23 0.71 -1.11 16 2 C -0.10 -2.09 5.88 -19.87 -0.12 -2.21 16 3 C -0.14 -2.75 9.70 22.27 0.22 -2.53 16 4 C -0.12 -2.43 10.05 22.27 0.22 -2.21 16 5 C -0.14 -3.21 9.70 22.27 0.22 -3.00 16 6 C -0.08 -2.11 5.13 -19.87 -0.10 -2.21 16 7 C -0.07 -1.95 5.34 29.85 0.16 -1.79 16 8 C -0.11 -3.58 5.52 30.60 0.17 -3.42 16 9 C 0.15 6.05 5.64 86.38 0.49 6.53 16 10 N -0.58 -28.60 2.03 -706.33 -1.43 -30.04 16 11 C -0.26 -13.89 9.66 84.03 0.81 -13.08 16 12 H 0.08 4.12 7.92 -2.91 -0.02 4.09 16 13 C -0.05 -2.83 4.86 84.86 0.41 -2.42 16 14 N -0.93 -53.92 9.31 21.65 0.20 -53.71 16 15 Si 0.97 44.83 29.61 68.60 2.03 46.86 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 18 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 19 C 0.19 8.77 5.49 85.63 0.47 9.24 16 20 C 0.48 23.27 6.55 71.24 0.47 23.74 16 21 O -0.56 -31.21 16.89 21.98 0.37 -30.84 16 22 O -0.53 -21.32 13.42 -51.41 -0.69 -22.01 16 23 C -0.14 -3.44 9.36 22.27 0.21 -3.23 16 24 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 26 H 0.08 1.01 8.09 -2.39 -0.02 0.99 16 27 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 28 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 29 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 30 H 0.08 1.93 8.09 -2.38 -0.02 1.91 16 31 H 0.07 1.87 8.09 -2.39 -0.02 1.85 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.04 1.62 8.07 -2.39 -0.02 1.60 16 35 H 0.04 1.62 8.04 -2.38 -0.02 1.60 16 36 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 37 H 0.09 4.70 6.35 -2.39 -0.02 4.69 16 38 H 0.09 3.32 8.12 -2.39 -0.02 3.30 16 39 H 0.40 12.56 9.10 -74.06 -0.67 11.88 16 40 H 0.12 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -68.90 340.39 5.16 -63.73 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.35 Total: 23.68 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 4.33 Total: 2.31 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -1.23 Total: -83.75 kcal Atomic # 8 Polarization: -52.53 SS G_CDS: -0.32 Total: -52.85 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -68.90 5.16 -63.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607849465.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.893 kcal (2) G-P(sol) polarization free energy of solvation -68.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds