Wall clock time and date at job start Mon Mar 30 2020 01:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00399 * 2 1 4 4 H 1.48500 * 109.47378 * 240.00624 * 3 2 1 5 5 H 1.48504 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47253 * 120.00401 * 3 2 1 7 7 C 1.38816 * 119.99608 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99592 * 201.41974 * 7 2 1 9 9 N 1.36938 * 119.99833 * 21.42058 * 7 2 1 10 10 C 1.46501 * 120.00400 * 37.57807 * 9 7 2 11 11 C 1.52997 * 109.46985 * 89.99851 * 10 9 7 12 12 C 1.52995 * 109.47192 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47300 * 179.97438 * 12 11 10 14 14 C 1.38246 * 119.99824 * 90.00573 * 13 12 11 15 15 C 1.38231 * 119.99804 * 179.97438 * 14 13 12 16 16 C 1.38232 * 120.00272 * 359.97206 * 15 14 13 17 17 C 1.38240 * 120.00070 * 0.27824 * 16 15 14 18 18 C 1.38230 * 120.00464 * 269.98178 * 13 12 11 19 19 C 1.46500 * 119.99682 * 217.57982 * 9 7 2 20 20 C 1.53005 * 109.47268 * 275.30958 * 19 9 7 21 21 C 1.50698 * 109.47303 * 180.02562 * 20 19 9 22 22 O 1.20827 * 119.99972 * 359.97438 * 21 20 19 23 23 O 1.34231 * 120.00060 * 179.97438 * 21 20 19 24 24 H 0.97004 * 119.99282 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46868 * 330.00301 * 10 9 7 26 26 H 1.08999 * 109.47247 * 210.00172 * 10 9 7 27 27 H 1.09006 * 109.46856 * 59.99996 * 11 10 9 28 28 H 1.08999 * 109.47390 * 300.00233 * 11 10 9 29 29 H 1.09006 * 109.47131 * 60.00277 * 12 11 10 30 30 H 1.08999 * 109.47235 * 300.00441 * 12 11 10 31 31 H 1.07998 * 119.99820 * 359.97383 * 14 13 12 32 32 H 1.07998 * 119.99605 * 179.97438 * 15 14 13 33 33 H 1.08002 * 120.00238 * 180.02562 * 16 15 14 34 34 H 1.07999 * 119.99695 * 179.72449 * 17 16 15 35 35 H 1.08001 * 120.00266 * 359.97438 * 18 13 12 36 36 H 1.09001 * 109.47672 * 35.30640 * 19 9 7 37 37 H 1.09000 * 109.47298 * 155.31104 * 19 9 7 38 38 H 1.09000 * 109.46582 * 299.99845 * 20 19 9 39 39 H 1.09000 * 109.46841 * 59.99867 * 20 19 9 40 40 H 0.96692 * 116.99830 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0343 -1.2347 0.3410 9 7 1.3964 -2.3469 -0.4342 10 6 0.4720 -2.2975 -1.5697 11 6 1.2474 -2.5262 -2.8687 12 6 0.2820 -2.4752 -4.0545 13 6 1.0458 -2.6999 -5.3341 14 6 1.2133 -3.9821 -5.8230 15 6 1.9134 -4.1881 -6.9970 16 6 2.4455 -3.1120 -7.6824 17 6 2.2825 -1.8303 -7.1908 18 6 1.5784 -1.6239 -6.0192 19 6 1.6640 -3.6211 0.2375 20 6 2.9327 -4.2478 -0.3443 21 6 3.2076 -5.5588 0.3462 22 8 2.4653 -5.9513 1.2149 23 8 4.2772 -6.2903 -0.0038 24 1 -0.4849 0.8401 0.0004 25 1 -0.0115 -1.3211 -1.6023 26 1 -0.2845 -3.0740 -1.4565 27 1 1.7310 -3.5026 -2.8360 28 1 2.0039 -1.7497 -2.9819 29 1 -0.2019 -1.4990 -4.0874 30 1 -0.4742 -3.2520 -3.9411 31 1 0.7972 -4.8227 -5.2877 32 1 2.0446 -5.1898 -7.3787 33 1 2.9922 -3.2730 -8.5998 34 1 2.7020 -0.9901 -7.7240 35 1 1.4469 -0.6221 -5.6377 36 1 1.8011 -3.4475 1.3049 37 1 0.8221 -4.2963 0.0845 38 1 2.7955 -4.4215 -1.4116 39 1 3.7746 -3.5725 -0.1913 40 1 4.4123 -7.1237 0.4675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608187685.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:59 Heat of formation + Delta-G solvation = -67.096848 kcal Electronic energy + Delta-G solvation = -21130.472247 eV Core-core repulsion = 17909.944368 eV Total energy + Delta-G solvation = -3220.527879 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.86289 -39.11041 -36.45512 -35.75035 -33.73591 -32.07411 -30.73827 -30.44829 -28.91897 -25.50448 -24.77767 -22.49261 -22.40873 -20.98767 -20.15278 -19.96210 -17.78285 -16.87383 -16.46439 -16.06485 -15.61746 -15.17159 -14.96542 -14.69003 -13.94808 -13.69451 -13.32401 -13.27660 -12.97430 -12.83317 -12.72624 -12.39214 -12.00132 -11.47446 -11.30429 -11.20671 -11.07930 -10.95821 -10.83363 -10.65014 -10.55811 -10.36297 -10.20995 -10.01770 -9.76689 -9.52324 -8.78142 -8.53682 -8.44410 -6.63592 -5.83217 -3.42552 1.53169 1.54172 2.57655 3.34264 3.40640 3.40856 3.45956 3.94607 4.45589 5.00971 5.01818 5.11625 5.24804 5.30161 5.42713 5.55606 5.62462 5.68259 5.70616 5.81545 5.92601 6.02464 6.16937 6.19867 6.27424 6.39136 6.43576 6.58582 6.62891 6.63270 6.74952 6.76202 6.79077 6.91761 7.03542 7.17140 7.22803 7.68852 7.78285 8.21664 8.47771 9.14882 9.75840 10.33828 11.17197 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.009636 B = 0.006261 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2905.101371 B = 4471.078638 C = 6611.023271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.017 3.983 3 Si 0.896 3.104 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.267 4.267 8 H 0.060 0.940 9 N -0.579 5.579 10 C 0.144 3.856 11 C -0.127 4.127 12 C -0.083 4.083 13 C -0.065 4.065 14 C -0.122 4.122 15 C -0.121 4.121 16 C -0.136 4.136 17 C -0.120 4.120 18 C -0.119 4.119 19 C 0.159 3.841 20 C -0.134 4.134 21 C 0.479 3.521 22 O -0.522 6.522 23 O -0.526 6.526 24 H 0.256 0.744 25 H 0.096 0.904 26 H 0.024 0.976 27 H 0.043 0.957 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.055 0.945 37 H 0.045 0.955 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.094 -7.707 -11.038 14.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.184 4.184 3 Si 0.725 3.275 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.396 4.396 8 H 0.078 0.922 9 N -0.298 5.298 10 C 0.018 3.982 11 C -0.167 4.167 12 C -0.121 4.121 13 C -0.065 4.065 14 C -0.140 4.140 15 C -0.139 4.139 16 C -0.154 4.154 17 C -0.138 4.138 18 C -0.137 4.137 19 C 0.032 3.968 20 C -0.175 4.175 21 C 0.321 3.679 22 O -0.410 6.410 23 O -0.337 6.337 24 H 0.066 0.934 25 H 0.113 0.887 26 H 0.043 0.957 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 3.661 -7.265 -10.963 13.652 hybrid contribution 0.736 0.259 0.177 0.800 sum 4.397 -7.007 -10.787 13.593 Atomic orbital electron populations 1.70006 1.05585 1.25940 1.51057 1.25169 0.94979 0.98729 0.99520 0.86482 0.79273 0.83330 0.78374 1.20786 1.21578 1.20659 1.18949 0.94197 0.85607 1.40885 0.92198 1.43769 1.51850 1.02552 1.31651 1.21015 0.90769 1.02587 0.83792 1.22249 0.98685 1.00696 0.95038 1.20676 0.97685 1.02339 0.91371 1.20150 0.97206 0.92989 0.96152 1.21067 0.99870 0.96691 0.96338 1.21085 0.98509 0.98591 0.95743 1.21046 1.01206 0.92992 1.00184 1.21116 0.99185 0.96925 0.96560 1.21131 0.98243 0.99044 0.95239 1.20642 0.91908 0.88205 0.96089 1.22438 1.04636 0.89085 1.01328 1.24208 0.76672 0.86388 0.80587 1.90678 1.47646 1.71410 1.31310 1.84631 1.47644 1.36870 1.64570 0.93408 0.88675 0.95748 0.93815 0.92083 0.91064 0.91584 0.86300 0.86557 0.86673 0.86484 0.86048 0.92711 0.93654 0.88574 0.88063 0.74330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.65 11.47 55.49 0.64 -24.01 16 2 C 0.02 0.45 4.95 -17.43 -0.09 0.36 16 3 Si 0.90 20.93 29.60 -169.99 -5.03 15.90 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.27 -6.97 9.45 -15.06 -0.14 -7.11 16 8 H 0.06 1.55 7.92 -52.49 -0.42 1.14 16 9 N -0.58 -13.72 2.43 -173.23 -0.42 -14.14 16 10 C 0.14 3.18 5.33 -4.04 -0.02 3.16 16 11 C -0.13 -2.35 5.52 -26.74 -0.15 -2.50 16 12 C -0.08 -1.30 5.34 -27.89 -0.15 -1.45 16 13 C -0.06 -0.96 5.13 -104.62 -0.54 -1.49 16 14 C -0.12 -1.63 9.70 -39.58 -0.38 -2.02 16 15 C -0.12 -1.46 10.05 -39.59 -0.40 -1.86 16 16 C -0.14 -1.60 10.05 -39.58 -0.40 -2.00 16 17 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 18 C -0.12 -1.68 9.70 -39.59 -0.38 -2.07 16 19 C 0.16 3.34 5.01 -4.04 -0.02 3.32 16 20 C -0.13 -2.34 6.11 -27.88 -0.17 -2.51 16 21 C 0.48 7.82 8.33 36.00 0.30 8.12 16 22 O -0.52 -9.96 16.74 -18.75 -0.31 -10.27 16 23 O -0.53 -6.83 13.42 -39.26 -0.53 -7.36 16 24 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.10 2.38 5.52 -51.93 -0.29 2.10 16 26 H 0.02 0.51 7.86 -51.93 -0.41 0.11 16 27 H 0.04 0.78 6.64 -51.93 -0.34 0.43 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 30 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 31 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 36 H 0.05 1.24 8.04 -51.93 -0.42 0.82 16 37 H 0.05 0.94 7.79 -51.93 -0.40 0.53 16 38 H 0.10 1.59 6.64 -51.93 -0.34 1.25 16 39 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 40 H 0.40 3.31 9.10 45.56 0.41 3.72 16 LS Contribution 340.28 15.07 5.13 5.13 Total: -1.00 -30.24 340.28 -8.61 -38.85 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -5.14 Total: 5.85 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -2.94 Total: -9.94 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.21 Total: -38.16 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.84 Total: -17.63 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.24 -8.61 -38.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187685.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.249 kcal (2) G-P(sol) polarization free energy of solvation -30.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds