Wall clock time and date at job start Mon Mar 30 2020 01:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99570 * 2 1 4 4 H 1.48496 * 109.47057 * 269.99730 * 3 2 1 5 5 H 1.48497 * 109.47109 * 30.00015 * 3 2 1 6 6 H 1.48498 * 109.46510 * 150.00077 * 3 2 1 7 7 C 1.37870 * 120.00372 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00485 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99903 * 0.02562 * 7 2 1 10 10 O 1.42896 * 109.46976 * 179.97438 * 9 7 2 11 11 C 1.42899 * 113.99738 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47326 * 180.02562 * 11 10 9 13 13 N 1.46894 * 109.47209 * 65.11204 * 12 11 10 14 14 C 1.47157 * 111.00226 * 70.57401 * 13 12 11 15 15 C 1.52889 * 108.50318 * 52.12377 * 14 13 12 16 16 C 1.50725 * 109.97091 * 50.38352 * 15 14 13 17 17 C 1.38591 * 118.44383 * 163.15534 * 16 15 14 18 18 C 1.38523 * 120.30978 * 179.86540 * 17 16 15 19 19 O 1.35906 * 120.14742 * 179.97438 * 18 17 16 20 20 C 1.38758 * 119.71095 * 359.94432 * 18 17 16 21 21 C 1.37912 * 119.80899 * 0.07482 * 20 18 17 22 22 C 1.37879 * 121.65442 * 343.08760 * 16 15 14 23 23 C 1.46634 * 111.00153 * 193.55080 * 13 12 11 24 24 H 0.96998 * 120.00212 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46593 * 59.99632 * 9 7 2 26 26 H 1.08997 * 109.46861 * 299.99883 * 9 7 2 27 27 H 1.09003 * 109.47501 * 300.00076 * 11 10 9 28 28 H 1.09005 * 109.47366 * 60.00259 * 11 10 9 29 29 H 1.09003 * 109.47391 * 185.11443 * 12 11 10 30 30 H 1.09005 * 109.47152 * 305.11092 * 12 11 10 31 31 H 1.08997 * 109.63712 * 171.82935 * 14 13 12 32 32 H 1.09002 * 109.63229 * 292.41979 * 14 13 12 33 33 H 1.08999 * 109.39261 * 170.54284 * 15 14 13 34 34 H 1.09005 * 109.38635 * 290.23016 * 15 14 13 35 35 H 1.08000 * 119.84781 * 359.83586 * 17 16 15 36 36 H 0.96704 * 113.99642 * 89.99275 * 19 18 17 37 37 H 1.08003 * 120.09880 * 180.02562 * 20 18 17 38 38 H 1.07995 * 119.76977 * 180.02562 * 21 20 18 39 39 H 1.08993 * 109.29957 * 49.49204 * 23 13 12 40 40 H 1.09002 * 109.30261 * 168.87006 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5652 -4.8753 0.0011 12 6 2.6482 -5.9561 0.0017 13 7 3.4064 -5.8888 1.2580 14 6 2.5887 -6.3466 2.3927 15 6 2.0065 -7.7179 2.0492 16 6 3.1008 -8.6360 1.5683 17 6 2.8558 -9.9999 1.5460 18 6 3.8333 -10.8787 1.1086 19 8 3.5897 -12.2156 1.0885 20 6 5.0620 -10.3880 0.6905 21 6 5.3021 -9.0301 0.7145 22 6 4.3232 -8.1504 1.1549 23 6 4.6394 -6.6776 1.1705 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 0.9454 -4.9822 0.8913 28 1 0.9448 -4.9827 -0.8887 29 1 2.1823 -6.9373 -0.0895 30 1 3.3230 -5.7948 -0.8390 31 1 3.2109 -6.4258 3.2841 32 1 1.7789 -5.6388 2.5696 33 1 1.5393 -8.1453 2.9364 34 1 1.2570 -7.6067 1.2655 35 1 1.8986 -10.3795 1.8715 36 1 3.2113 -12.5340 0.2575 37 1 5.8284 -11.0675 0.3479 38 1 6.2585 -8.6489 0.3886 39 1 5.1717 -6.4138 0.2567 40 1 5.2720 -6.4539 2.0296 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656574128.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:19 Heat of formation + Delta-G solvation = -60.302868 kcal Electronic energy + Delta-G solvation = -21129.325514 eV Core-core repulsion = 17909.092244 eV Total energy + Delta-G solvation = -3220.233270 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.73459 -38.67092 -36.76983 -35.75735 -32.93614 -32.66671 -30.90796 -29.44106 -28.69973 -26.79311 -24.18918 -23.89505 -22.50500 -22.26915 -21.63917 -19.42889 -18.04289 -16.57298 -16.43572 -16.32105 -15.73620 -15.55332 -15.06644 -14.90953 -14.47473 -14.21397 -14.09271 -13.79515 -13.32416 -12.99350 -12.77628 -12.39178 -12.31378 -11.96234 -11.80563 -11.55578 -11.47233 -11.08201 -11.07216 -10.78008 -10.69108 -10.59269 -10.30926 -9.94824 -9.03410 -9.01601 -8.74883 -8.59268 -8.14258 -8.05900 -6.05913 -4.06698 0.99062 1.09606 3.33353 3.33738 3.38519 3.44628 3.90977 4.06957 4.39573 4.51384 4.63043 4.71557 4.90563 4.94685 5.02376 5.14531 5.28064 5.30616 5.34539 5.45332 5.53070 5.67043 5.68765 5.74928 5.83146 5.88501 6.00030 6.07896 6.10085 6.13208 6.20320 6.32234 6.40852 6.61048 7.14673 7.19082 7.23378 7.37100 7.49514 7.86127 8.22634 8.68036 9.08375 9.58087 11.05813 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.043826 B = 0.003101 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.739866 B = 9026.570542 C = 9308.961574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.380 6.380 11 C 0.068 3.932 12 C 0.053 3.947 13 N -0.509 5.509 14 C 0.051 3.949 15 C -0.123 4.123 16 C -0.058 4.058 17 C -0.144 4.144 18 C 0.098 3.902 19 O -0.501 6.501 20 C -0.149 4.149 21 C -0.098 4.098 22 C -0.117 4.117 23 C 0.091 3.909 24 H 0.263 0.737 25 H 0.001 0.999 26 H 0.003 0.997 27 H 0.035 0.965 28 H 0.037 0.963 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.126 0.874 36 H 0.388 0.612 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.088 0.912 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.394 -21.980 1.833 22.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.548 4.548 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.299 6.299 11 C -0.010 4.010 12 C -0.075 4.075 13 N -0.229 5.229 14 C -0.077 4.077 15 C -0.162 4.162 16 C -0.059 4.059 17 C -0.162 4.162 18 C 0.054 3.946 19 O -0.311 6.311 20 C -0.167 4.167 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.038 4.038 24 H 0.072 0.928 25 H 0.019 0.981 26 H 0.021 0.979 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.144 0.856 36 H 0.244 0.756 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.107 0.893 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.791 -21.265 2.487 22.461 hybrid contribution -0.452 -0.264 -0.648 0.833 sum 6.339 -21.529 1.839 22.518 Atomic orbital electron populations 1.69966 1.06102 1.27028 1.50963 1.24948 0.94958 0.99401 0.95303 0.86351 0.79723 0.82345 0.78166 1.20545 1.21158 1.19588 1.21073 0.94098 0.89366 1.50237 0.91513 1.20167 0.88859 0.83944 0.95053 1.87942 1.34648 1.12342 1.95004 1.22210 0.93830 0.86236 0.98700 1.22290 0.96653 0.96530 0.91992 1.62526 1.05372 1.51312 1.03714 1.22271 0.98056 0.93076 0.94329 1.21203 0.96567 0.96376 1.02008 1.19485 0.94859 0.93321 0.98188 1.21348 0.99445 0.92639 1.02813 1.18376 0.93326 0.82823 1.00082 1.84826 1.85395 1.19560 1.41334 1.21345 0.97390 0.95871 1.02110 1.21001 0.99100 0.92379 0.99136 1.20638 0.93714 0.98195 0.99312 1.21226 0.93721 0.85327 1.03511 0.92762 0.98095 0.97929 0.94644 0.94478 0.93483 0.90305 0.90460 0.89298 0.90076 0.89815 0.85633 0.75625 0.85591 0.85433 0.89341 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 22.10 29.54 -169.99 -5.02 17.08 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -15.23 9.43 -34.44 -0.32 -15.55 16 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.19 5.41 5.69 36.01 0.20 5.61 16 10 O -0.38 -9.30 10.27 -35.23 -0.36 -9.66 16 11 C 0.07 1.27 6.07 37.16 0.23 1.50 16 12 C 0.05 0.80 4.72 -3.83 -0.02 0.78 16 13 N -0.51 -7.49 4.94 -236.19 -1.17 -8.66 16 14 C 0.05 0.65 5.70 -3.74 -0.02 0.63 16 15 C -0.12 -1.34 5.15 -27.93 -0.14 -1.48 16 16 C -0.06 -0.66 5.15 -104.61 -0.54 -1.20 16 17 C -0.14 -1.53 9.59 -39.35 -0.38 -1.91 16 18 C 0.10 1.02 6.70 -39.28 -0.26 0.75 16 19 O -0.50 -4.54 13.51 -19.45 -0.26 -4.81 16 20 C -0.15 -1.46 9.99 -39.51 -0.39 -1.85 16 21 C -0.10 -0.98 9.64 -39.50 -0.38 -1.36 16 22 C -0.12 -1.32 5.41 -104.58 -0.57 -1.89 16 23 C 0.09 1.10 5.54 -5.15 -0.03 1.07 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 26 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 27 H 0.04 0.64 6.68 -51.93 -0.35 0.29 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.62 5.22 -51.93 -0.27 0.35 16 30 H 0.08 1.21 7.84 -51.93 -0.41 0.81 16 31 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16 32 H 0.09 1.24 6.88 -51.93 -0.36 0.88 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.92 6.62 -51.93 -0.34 0.57 16 35 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.39 1.65 9.06 45.56 0.41 2.07 16 37 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.09 1.02 7.85 -51.93 -0.41 0.62 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 326.33 15.07 4.92 4.92 Total: -1.00 -33.72 326.33 -8.95 -42.67 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -5.07 Total: -1.61 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -2.72 Total: -13.41 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: -0.43 Total: -35.18 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.62 Total: -14.47 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.72 -8.95 -42.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656574128.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.633 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds