Wall clock time and date at job start Mon Mar 30 2020 01:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99570 * 2 1 4 4 H 1.48496 * 109.47057 * 269.99730 * 3 2 1 5 5 H 1.48497 * 109.47109 * 30.00015 * 3 2 1 6 6 H 1.48498 * 109.46510 * 150.00077 * 3 2 1 7 7 C 1.37870 * 120.00372 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00485 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99903 * 0.02562 * 7 2 1 10 10 O 1.42896 * 109.46976 * 179.97438 * 9 7 2 11 11 C 1.42899 * 113.99738 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47326 * 180.02562 * 11 10 9 13 13 N 1.46894 * 109.47209 * 65.11204 * 12 11 10 14 14 C 1.47157 * 111.00226 * 70.57401 * 13 12 11 15 15 C 1.52889 * 108.50318 * 52.12377 * 14 13 12 16 16 C 1.50725 * 109.97091 * 50.38352 * 15 14 13 17 17 C 1.38591 * 118.44383 * 163.15534 * 16 15 14 18 18 C 1.38523 * 120.30978 * 179.86540 * 17 16 15 19 19 O 1.35906 * 120.14742 * 179.97438 * 18 17 16 20 20 C 1.38758 * 119.71095 * 359.94432 * 18 17 16 21 21 C 1.37912 * 119.80899 * 0.07482 * 20 18 17 22 22 C 1.37879 * 121.65442 * 343.08760 * 16 15 14 23 23 C 1.46634 * 111.00153 * 193.55080 * 13 12 11 24 24 H 0.96998 * 120.00212 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46593 * 59.99632 * 9 7 2 26 26 H 1.08997 * 109.46861 * 299.99883 * 9 7 2 27 27 H 1.09003 * 109.47501 * 300.00076 * 11 10 9 28 28 H 1.09005 * 109.47366 * 60.00259 * 11 10 9 29 29 H 1.09003 * 109.47391 * 185.11443 * 12 11 10 30 30 H 1.09005 * 109.47152 * 305.11092 * 12 11 10 31 31 H 1.08997 * 109.63712 * 171.82935 * 14 13 12 32 32 H 1.09002 * 109.63229 * 292.41979 * 14 13 12 33 33 H 1.08999 * 109.39261 * 170.54284 * 15 14 13 34 34 H 1.09005 * 109.38635 * 290.23016 * 15 14 13 35 35 H 1.08000 * 119.84781 * 359.83586 * 17 16 15 36 36 H 0.96704 * 113.99642 * 89.99275 * 19 18 17 37 37 H 1.08003 * 120.09880 * 180.02562 * 20 18 17 38 38 H 1.07995 * 119.76977 * 180.02562 * 21 20 18 39 39 H 1.08993 * 109.29957 * 49.49204 * 23 13 12 40 40 H 1.09002 * 109.30261 * 168.87006 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5652 -4.8753 0.0011 12 6 2.6482 -5.9561 0.0017 13 7 3.4064 -5.8888 1.2580 14 6 2.5887 -6.3466 2.3927 15 6 2.0065 -7.7179 2.0492 16 6 3.1008 -8.6360 1.5683 17 6 2.8558 -9.9999 1.5460 18 6 3.8333 -10.8787 1.1086 19 8 3.5897 -12.2156 1.0885 20 6 5.0620 -10.3880 0.6905 21 6 5.3021 -9.0301 0.7145 22 6 4.3232 -8.1504 1.1549 23 6 4.6394 -6.6776 1.1705 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 0.9454 -4.9822 0.8913 28 1 0.9448 -4.9827 -0.8887 29 1 2.1823 -6.9373 -0.0895 30 1 3.3230 -5.7948 -0.8390 31 1 3.2109 -6.4258 3.2841 32 1 1.7789 -5.6388 2.5696 33 1 1.5393 -8.1453 2.9364 34 1 1.2570 -7.6067 1.2655 35 1 1.8986 -10.3795 1.8715 36 1 3.2113 -12.5340 0.2575 37 1 5.8284 -11.0675 0.3479 38 1 6.2585 -8.6489 0.3886 39 1 5.1717 -6.4138 0.2567 40 1 5.2720 -6.4539 2.0296 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656574128.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:19 Heat of formation + Delta-G solvation = -84.773361 kcal Electronic energy + Delta-G solvation = -21130.386634 eV Core-core repulsion = 17909.092244 eV Total energy + Delta-G solvation = -3221.294390 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.60419 -39.58084 -38.32981 -36.84589 -34.89252 -33.76562 -32.05272 -30.44374 -29.89004 -28.76587 -25.17004 -24.99959 -24.40906 -23.29185 -22.75671 -20.40995 -18.84887 -18.54811 -17.68037 -17.44808 -17.13117 -16.56026 -16.46052 -16.04517 -15.84482 -15.60839 -15.26426 -14.99807 -14.63551 -14.14630 -13.82074 -13.58787 -13.46612 -13.27706 -13.05760 -12.93084 -12.73199 -12.66891 -12.38799 -12.27495 -12.20165 -11.93176 -11.70153 -11.31859 -11.20748 -10.83360 -10.15662 -9.78791 -9.39450 -9.17626 -8.29757 -6.41508 0.21736 0.32684 1.41179 1.44188 1.56495 2.36998 2.58329 2.96217 3.03912 3.25363 3.27293 3.70748 3.81913 3.90329 4.05397 4.15613 4.20105 4.28659 4.32035 4.44378 4.56842 4.57672 4.61383 4.69839 4.79171 4.86925 4.92004 4.96733 4.99418 5.02594 5.14252 5.21886 5.31973 5.42396 5.57314 5.58188 5.87279 5.99927 6.10267 6.17374 6.59626 6.82977 6.89105 7.30799 8.82669 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.043826 B = 0.003101 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.739866 B = 9026.570542 C = 9308.961574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.983 3.017 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.210 3.790 10 O -0.394 6.394 11 C 0.060 3.940 12 C 0.066 3.934 13 N -0.536 5.536 14 C 0.051 3.949 15 C -0.115 4.115 16 C -0.069 4.069 17 C -0.153 4.153 18 C 0.097 3.903 19 O -0.510 6.510 20 C -0.153 4.153 21 C -0.098 4.098 22 C -0.129 4.129 23 C 0.095 3.905 24 H 0.270 0.730 25 H -0.017 1.017 26 H -0.018 1.018 27 H 0.039 0.961 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.135 0.865 36 H 0.409 0.591 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.091 0.909 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.511 -22.684 1.736 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.805 3.195 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.079 0.921 9 C 0.135 3.865 10 O -0.314 6.314 11 C -0.018 4.018 12 C -0.061 4.061 13 N -0.258 5.258 14 C -0.077 4.077 15 C -0.153 4.153 16 C -0.069 4.069 17 C -0.171 4.171 18 C 0.052 3.948 19 O -0.324 6.324 20 C -0.171 4.171 21 C -0.116 4.116 22 C -0.131 4.131 23 C -0.033 4.033 24 H 0.079 0.921 25 H 0.000 1.000 26 H 0.000 1.000 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.153 0.847 36 H 0.268 0.732 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.109 0.891 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.902 -22.009 2.378 23.505 hybrid contribution -0.826 -0.184 -0.611 1.044 sum 7.076 -22.192 1.767 23.360 Atomic orbital electron populations 1.70071 1.07753 1.28570 1.50781 1.25963 0.95963 1.03382 0.94008 0.85189 0.78387 0.77039 0.78835 1.19250 1.19931 1.18894 1.21391 0.94067 0.90896 1.51851 0.92120 1.19777 0.88664 0.85017 0.93091 1.87895 1.34646 1.13810 1.95038 1.22545 0.95458 0.84558 0.99192 1.22120 0.95705 0.95884 0.92414 1.62459 1.06471 1.53065 1.03758 1.22228 0.97547 0.93793 0.94095 1.21104 0.96450 0.95164 1.02601 1.19546 0.94948 0.93706 0.98738 1.21468 1.00135 0.92427 1.03120 1.18510 0.93447 0.83283 0.99540 1.84769 1.85641 1.18845 1.43095 1.21582 0.97678 0.96088 1.01766 1.21212 0.99521 0.92417 0.98446 1.20595 0.94332 0.97717 1.00476 1.21183 0.92469 0.85797 1.03885 0.92102 0.99962 0.99991 0.94256 0.93801 0.91221 0.90634 0.89842 0.91097 0.88598 0.90003 0.84731 0.73191 0.83818 0.83624 0.89086 0.88770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.85 13.29 21.44 0.28 -56.57 16 2 C 0.00 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.98 45.05 29.54 68.60 2.03 47.08 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 6 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.54 -33.18 9.43 25.60 0.24 -32.94 16 8 H 0.06 3.68 7.81 -2.91 -0.02 3.65 16 9 C 0.21 12.09 5.69 71.24 0.41 12.49 16 10 O -0.39 -19.81 10.27 -148.98 -1.53 -21.34 16 11 C 0.06 2.26 6.07 71.98 0.44 2.70 16 12 C 0.07 1.98 4.72 86.30 0.41 2.39 16 13 N -0.54 -15.67 4.94 -901.17 -4.45 -20.12 16 14 C 0.05 1.31 5.70 86.22 0.49 1.80 16 15 C -0.11 -2.39 5.15 29.82 0.15 -2.23 16 16 C -0.07 -1.46 5.15 -19.86 -0.10 -1.57 16 17 C -0.15 -2.99 9.59 22.42 0.22 -2.77 16 18 C 0.10 1.80 6.70 22.46 0.15 1.95 16 19 O -0.51 -8.08 13.51 -92.49 -1.25 -9.33 16 20 C -0.15 -2.64 9.99 22.32 0.22 -2.42 16 21 C -0.10 -1.75 9.64 22.32 0.22 -1.54 16 22 C -0.13 -2.74 5.41 -19.84 -0.11 -2.85 16 23 C 0.09 2.20 5.54 85.59 0.47 2.68 16 24 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 25 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 26 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 27 H 0.04 1.45 6.68 -2.39 -0.02 1.43 16 28 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.07 1.77 5.22 -2.39 -0.01 1.76 16 30 H 0.08 2.29 7.84 -2.38 -0.02 2.27 16 31 H 0.08 1.98 8.05 -2.39 -0.02 1.96 16 32 H 0.07 2.03 6.88 -2.39 -0.02 2.01 16 33 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.08 1.71 6.62 -2.38 -0.02 1.70 16 35 H 0.13 2.29 8.06 -2.91 -0.02 2.26 16 36 H 0.41 2.50 9.06 -74.05 -0.67 1.83 16 37 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 38 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 39 H 0.09 2.02 7.85 -2.39 -0.02 2.00 16 40 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -71.97 326.33 -0.88 -72.85 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 0.37 Total: 8.98 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 3.67 Total: -21.55 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -4.17 Total: -76.69 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -2.78 Total: -30.67 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -71.97 -0.88 -72.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656574128.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.924 kcal (2) G-P(sol) polarization free energy of solvation -71.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds