Wall clock time and date at job start Mon Mar 30 2020 02:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 116.99370 * 2 1 4 4 C 1.38800 * 120.02335 * 180.02562 * 3 2 1 5 5 C 1.38152 * 120.05265 * 179.70188 * 4 3 2 6 6 C 1.50701 * 119.94693 * 180.27560 * 5 4 3 7 7 C 1.38192 * 120.11238 * 0.55231 * 5 4 3 8 8 C 1.50701 * 119.97675 * 179.72409 * 7 5 4 9 9 N 1.46501 * 109.47075 * 269.72665 * 8 7 5 10 10 C 1.36939 * 119.99915 * 89.99686 * 9 8 7 11 11 H 1.07991 * 119.99853 * 220.42980 * 10 9 8 12 12 C 1.38816 * 119.99559 * 40.43732 * 10 9 8 13 13 N 1.31611 * 120.00193 * 16.67827 * 12 10 9 14 14 Si 1.86799 * 119.99558 * 196.67965 * 12 10 9 15 15 H 1.48491 * 109.47331 * 179.97438 * 14 12 10 16 16 H 1.48507 * 109.47177 * 300.00074 * 14 12 10 17 17 H 1.48501 * 109.47397 * 59.99883 * 14 12 10 18 18 C 1.46494 * 120.00095 * 269.99902 * 9 8 7 19 19 C 1.52996 * 117.50108 * 192.49307 * 18 9 8 20 20 C 1.53002 * 60.00155 * 252.50641 * 19 18 9 21 21 C 1.38751 * 120.05283 * 359.44865 * 7 5 4 22 22 O 1.35899 * 120.03252 * 180.25175 * 21 7 5 23 23 C 1.38609 * 120.03431 * 0.02562 * 3 2 1 24 24 H 1.08996 * 109.47578 * 60.00042 * 1 2 3 25 25 H 1.08996 * 109.47096 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46916 * 299.99833 * 1 2 3 27 27 H 1.07997 * 119.97355 * 0.02562 * 4 3 2 28 28 H 1.08998 * 109.47387 * 270.27621 * 6 5 4 29 29 H 1.09000 * 109.46853 * 30.27371 * 6 5 4 30 30 H 1.09001 * 109.47422 * 150.27412 * 6 5 4 31 31 H 1.08995 * 109.47204 * 149.72442 * 8 7 5 32 32 H 1.08999 * 109.47124 * 29.72945 * 8 7 5 33 33 H 0.97004 * 119.99506 * 174.56016 * 13 12 10 34 34 H 1.09007 * 115.55095 * 338.19785 * 18 9 8 35 35 H 1.09003 * 117.49923 * 359.97438 * 19 18 9 36 36 H 1.09003 * 117.50057 * 145.01654 * 19 18 9 37 37 H 1.08992 * 117.50000 * 252.50780 * 20 19 18 38 38 H 1.08997 * 117.51251 * 107.47369 * 20 19 18 39 39 H 0.96701 * 114.00368 * 89.99484 * 22 21 7 40 40 H 1.07998 * 120.05194 * 0.04180 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4319 1.2843 -0.0005 5 6 4.0596 2.5150 -0.0068 6 6 5.5646 2.5918 -0.0136 7 6 3.3097 3.6757 -0.0009 8 6 3.9977 5.0166 -0.0015 9 7 4.2212 5.4513 1.3796 10 6 5.3808 5.1130 2.0247 11 1 5.3544 4.8164 3.0627 12 6 6.5901 5.1517 1.3443 13 7 6.6857 5.8107 0.2091 14 14 8.0817 4.2682 2.0400 15 1 9.2398 4.4607 1.1308 16 1 8.4055 4.8227 3.3791 17 1 7.7855 2.8183 2.1632 18 6 3.2041 6.2478 2.0705 19 6 3.6045 6.9162 3.3872 20 6 2.6652 5.7085 3.3970 21 6 1.9239 3.6077 -0.0004 22 8 1.1869 4.7495 0.0002 23 6 1.2915 2.3738 0.0005 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 4.0202 0.3786 -0.0014 28 1 5.9323 2.6083 1.0124 29 1 5.9704 1.7225 -0.5311 30 1 5.8798 3.5002 -0.5271 31 1 3.3715 5.7460 -0.5152 32 1 4.9551 4.9335 -0.5157 33 1 7.5476 5.9044 -0.2261 34 1 2.5080 6.7836 1.4250 35 1 4.6245 6.7630 3.7397 36 1 3.1719 7.8920 3.6082 37 1 1.6148 5.8897 3.6244 38 1 3.0672 4.7609 3.7554 39 1 0.9733 5.0802 -0.8830 40 1 0.2129 2.3187 0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658354665.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:13 Heat of formation + Delta-G solvation = -3.372356 kcal Electronic energy + Delta-G solvation = -22603.729918 eV Core-core repulsion = 19385.965340 eV Total energy + Delta-G solvation = -3217.764578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.96799 -38.20467 -36.77514 -35.98296 -33.55827 -31.35416 -30.86877 -29.22735 -27.55519 -26.04630 -25.06393 -23.42433 -21.39597 -21.22688 -20.37680 -19.61633 -17.92130 -16.63602 -16.37918 -16.24496 -15.53855 -15.32414 -14.68146 -14.48652 -14.15192 -13.75251 -13.59358 -13.16030 -12.88148 -12.49511 -12.09312 -11.83871 -11.74634 -11.66536 -11.49874 -10.99625 -10.85567 -10.64907 -10.49550 -10.45901 -10.34519 -10.16113 -9.94544 -9.68560 -9.49388 -9.15486 -8.45148 -8.05549 -7.48561 -6.40738 -5.84593 -3.42331 1.78085 1.97118 3.30536 3.37013 3.39801 3.51176 4.13429 4.41049 4.67670 5.07532 5.12062 5.20239 5.28960 5.34379 5.44763 5.49090 5.58713 5.84562 5.85594 6.05905 6.07508 6.17369 6.25766 6.37135 6.44267 6.56271 6.60635 6.67467 6.73737 6.76008 6.95027 7.05458 7.11773 7.26793 7.27545 7.37779 7.64311 7.73870 7.80852 8.17938 8.52702 9.15862 9.76375 10.37266 11.15980 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016921 B = 0.007344 C = 0.005870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.357834 B = 3811.736885 C = 4769.095472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.322 6.322 3 C 0.121 3.879 4 C -0.169 4.169 5 C -0.009 4.009 6 C -0.122 4.122 7 C -0.132 4.132 8 C 0.185 3.815 9 N -0.538 5.538 10 C -0.251 4.251 11 H 0.057 0.943 12 C 0.024 3.976 13 N -0.891 5.891 14 Si 0.886 3.114 15 H -0.287 1.287 16 H -0.282 1.282 17 H -0.276 1.276 18 C 0.142 3.858 19 C -0.199 4.199 20 C -0.224 4.224 21 C 0.144 3.856 22 O -0.490 6.490 23 C -0.247 4.247 24 H 0.051 0.949 25 H 0.093 0.907 26 H 0.052 0.948 27 H 0.122 0.878 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.094 0.906 31 H 0.033 0.967 32 H 0.111 0.889 33 H 0.258 0.742 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.379 0.621 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.398 -6.055 -3.349 11.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.076 3.924 4 C -0.187 4.187 5 C -0.010 4.010 6 C -0.178 4.178 7 C -0.136 4.136 8 C 0.060 3.940 9 N -0.253 5.253 10 C -0.381 4.381 11 H 0.075 0.925 12 C -0.176 4.176 13 N -0.533 5.533 14 Si 0.715 3.285 15 H -0.213 1.213 16 H -0.208 1.208 17 H -0.202 1.202 18 C 0.032 3.968 19 C -0.238 4.238 20 C -0.265 4.265 21 C 0.099 3.901 22 O -0.299 6.299 23 C -0.267 4.267 24 H 0.069 0.931 25 H 0.112 0.888 26 H 0.070 0.930 27 H 0.140 0.860 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.112 0.888 31 H 0.052 0.948 32 H 0.128 0.872 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.234 0.766 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.092 -6.296 -2.921 11.438 hybrid contribution 0.282 -0.352 0.167 0.481 sum -8.810 -6.648 -2.754 11.375 Atomic orbital electron populations 1.22938 0.79241 1.03121 1.01152 1.86025 1.20719 1.27433 1.89467 1.18620 0.91970 0.83319 0.98445 1.20259 0.90899 0.98179 1.09394 1.19494 0.96477 0.90810 0.94171 1.21106 0.90229 1.02600 1.03830 1.21320 0.92306 0.99236 1.00712 1.19910 0.99921 0.86954 0.87244 1.43195 1.15340 1.55830 1.10948 1.18867 0.83762 1.39437 0.96023 0.92548 1.25193 0.97159 0.98024 0.97246 1.69824 1.24016 1.41073 1.18386 0.86704 0.82620 0.80400 0.78731 1.21303 1.20766 1.20230 1.21027 0.93907 0.95416 0.86406 1.23085 1.00264 0.94867 1.05584 1.23264 0.96792 0.97776 1.08664 1.17998 0.89149 0.84432 0.98540 1.84853 1.72708 1.39950 1.32341 1.21231 0.99569 0.92195 1.13680 0.93058 0.88837 0.92953 0.86024 0.89854 0.93576 0.88779 0.94843 0.87172 0.93124 0.89387 0.88472 0.91017 0.91230 0.90177 0.76610 0.86065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.32 -5.01 10.50 -19.41 -0.20 -5.22 16 3 C 0.12 2.11 6.68 -39.24 -0.26 1.85 16 4 C -0.17 -3.11 9.64 -39.41 -0.38 -3.49 16 5 C -0.01 -0.17 5.88 -104.67 -0.61 -0.79 16 6 C -0.12 -2.47 8.00 36.01 0.29 -2.18 16 7 C -0.13 -2.73 5.48 -104.45 -0.57 -3.30 16 8 C 0.19 4.18 4.83 -5.19 -0.03 4.16 16 9 N -0.54 -13.02 2.75 -167.03 -0.46 -13.48 16 10 C -0.25 -6.50 7.19 -15.06 -0.11 -6.61 16 11 H 0.06 1.53 7.39 -52.49 -0.39 1.14 16 12 C 0.02 0.61 3.10 -17.43 -0.05 0.55 16 13 N -0.89 -23.55 11.01 55.49 0.61 -22.94 16 14 Si 0.89 20.47 28.03 -169.99 -4.77 15.70 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.23 6.72 56.52 0.38 -5.85 16 18 C 0.14 3.15 6.61 -67.93 -0.45 2.70 16 19 C -0.20 -4.17 9.81 -26.73 -0.26 -4.44 16 20 C -0.22 -4.68 10.15 -26.73 -0.27 -4.95 16 21 C 0.14 2.67 6.67 -39.24 -0.26 2.41 16 22 O -0.49 -8.15 12.54 -19.42 -0.24 -8.39 16 23 C -0.25 -4.20 8.97 -39.29 -0.35 -4.55 16 24 H 0.05 0.50 7.66 -51.93 -0.40 0.11 16 25 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.56 7.66 -51.92 -0.40 0.16 16 27 H 0.12 2.05 8.06 -52.49 -0.42 1.62 16 28 H 0.08 1.85 5.45 -51.93 -0.28 1.56 16 29 H 0.05 0.80 8.09 -51.93 -0.42 0.38 16 30 H 0.09 2.07 4.83 -51.93 -0.25 1.82 16 31 H 0.03 0.72 7.43 -51.93 -0.39 0.33 16 32 H 0.11 2.70 3.49 -51.93 -0.18 2.52 16 33 H 0.26 6.66 8.32 -40.82 -0.34 6.32 16 34 H 0.09 1.87 8.11 -51.92 -0.42 1.45 16 35 H 0.10 2.22 6.95 -51.93 -0.36 1.86 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.08 1.80 8.11 -51.93 -0.42 1.38 16 39 H 0.38 4.43 9.06 45.56 0.41 4.84 16 40 H 0.12 1.77 6.30 -52.49 -0.33 1.44 16 LS Contribution 319.90 15.07 4.82 4.82 Total: -1.00 -28.77 319.90 -7.25 -36.01 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -4.67 Total: 10.79 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -2.33 Total: -17.30 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.15 Total: -36.42 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.45 Total: -13.61 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.77 Total: 15.70 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.77 -7.25 -36.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658354665.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.642 kcal (2) G-P(sol) polarization free energy of solvation -28.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds