Wall clock time and date at job start Mon Mar 30 2020 02:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47077 * 2 1 4 4 C 1.38552 * 119.85179 * 89.99848 * 3 2 1 5 5 C 1.38047 * 120.39151 * 180.02562 * 4 3 2 6 6 C 1.38706 * 120.08663 * 359.97438 * 5 4 3 7 7 O 1.35658 * 120.15110 * 179.97438 * 6 5 4 8 8 C 1.40144 * 119.70084 * 0.02562 * 6 5 4 9 9 C 1.47530 * 120.19576 * 180.02562 * 8 6 5 10 10 O 1.21593 * 120.00154 * 48.47647 * 9 8 6 11 11 N 1.34771 * 120.00127 * 228.48451 * 9 8 6 12 12 C 1.46501 * 119.99827 * 355.61404 * 11 9 8 13 13 C 1.46501 * 120.00106 * 175.61582 * 11 9 8 14 14 H 1.09002 * 109.47307 * 359.97438 * 13 11 9 15 15 C 1.53004 * 109.47076 * 120.00054 * 13 11 9 16 16 C 1.50697 * 109.47075 * 239.99724 * 13 11 9 17 17 H 1.08002 * 120.00282 * 0.02562 * 16 13 11 18 18 C 1.37878 * 119.99831 * 180.02562 * 16 13 11 19 19 N 1.31520 * 120.00316 * 0.02562 * 18 16 13 20 20 Si 1.86806 * 120.00074 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.46901 * 270.00064 * 20 18 16 22 22 H 1.48494 * 109.46917 * 29.99546 * 20 18 16 23 23 H 1.48494 * 109.47037 * 149.99826 * 20 18 16 24 24 C 1.37794 * 119.85127 * 270.25689 * 3 2 1 25 25 H 1.09003 * 109.46941 * 60.00361 * 1 2 3 26 26 H 1.09004 * 109.47009 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47270 * 300.00082 * 1 2 3 28 28 H 1.08998 * 109.47270 * 239.99918 * 2 1 3 29 29 H 1.09004 * 109.47285 * 120.00053 * 2 1 3 30 30 H 1.08002 * 119.80194 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.96100 * 179.97438 * 5 4 3 32 32 H 0.96700 * 114.00302 * 270.01940 * 7 6 5 33 33 H 1.09004 * 109.46835 * 274.85091 * 12 11 9 34 34 H 1.09001 * 109.47275 * 34.85198 * 12 11 9 35 35 H 1.09004 * 109.47009 * 154.85171 * 12 11 9 36 36 H 1.08993 * 109.47230 * 180.02562 * 15 13 11 37 37 H 1.09004 * 109.46774 * 299.99939 * 15 13 11 38 38 H 1.08999 * 109.47628 * 59.99533 * 15 13 11 39 39 H 0.96990 * 119.99770 * 180.02562 * 19 18 16 40 40 H 1.08003 * 120.04419 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2621 2.0710 1.2017 5 6 2.7218 3.3727 1.2147 6 6 2.9573 4.0389 0.0211 7 8 3.4085 5.3182 0.0324 8 6 2.7261 3.3848 -1.1966 9 6 2.9735 4.0828 -2.4725 10 8 4.0201 4.6766 -2.6477 11 7 2.0395 4.0625 -3.4439 12 6 0.8204 3.2686 -3.2713 13 6 2.2434 4.8343 -4.6723 14 1 3.1987 5.3565 -4.6191 15 6 2.2451 3.8881 -5.8747 16 6 1.1303 5.8386 -4.8252 17 1 0.3493 5.8965 -4.0814 18 6 1.1088 6.6835 -5.9145 19 7 2.0596 6.6126 -6.8206 20 14 -0.2706 7.9289 -6.1036 21 1 -1.3874 7.3182 -6.8686 22 1 -0.7556 8.3379 -4.7611 23 1 0.2348 9.1204 -6.8316 24 6 2.2559 2.0693 -1.1951 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.0798 1.5567 2.1337 31 1 2.8982 3.8730 2.1554 32 1 2.7062 5.9830 0.0355 33 1 1.0098 2.2404 -3.5796 34 1 0.5217 3.2846 -2.2232 35 1 0.0227 3.6902 -3.8830 36 1 2.3972 4.4622 -6.7886 37 1 3.0503 3.1616 -5.7641 38 1 1.2897 3.3661 -5.9278 39 1 2.0446 7.2072 -7.5866 40 1 2.0709 1.5600 -2.1294 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094107621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:39 Heat of formation + Delta-G solvation = -57.372997 kcal Electronic energy + Delta-G solvation = -21947.651492 eV Core-core repulsion = 18727.545270 eV Total energy + Delta-G solvation = -3220.106221 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.25044 -38.28769 -37.05914 -35.23239 -33.48504 -32.91365 -31.23578 -29.09630 -28.58774 -26.20304 -25.22985 -23.89271 -23.59668 -21.86393 -20.47129 -18.75277 -17.93688 -16.73369 -16.26553 -15.95184 -15.74129 -15.24469 -14.63465 -14.27777 -14.24440 -13.76719 -13.67564 -13.51182 -12.99377 -12.56658 -12.47529 -12.24228 -12.03131 -11.79861 -11.54055 -11.36170 -11.17789 -11.08959 -11.07221 -10.83972 -10.71250 -10.44970 -10.26163 -10.18521 -9.20174 -9.03384 -8.79963 -8.44495 -8.40030 -7.58098 -6.08040 -4.16423 1.08564 1.28395 3.24986 3.26995 3.32735 3.35152 3.72780 4.00570 4.32094 4.38610 4.65893 4.74175 4.97161 5.05648 5.21867 5.23025 5.28841 5.40830 5.45674 5.70732 5.73800 5.80456 5.85829 5.91745 6.03604 6.06960 6.21830 6.36014 6.39948 6.51376 6.75855 6.78521 6.85050 7.06891 7.43300 7.53263 7.70818 7.83552 8.01749 8.18919 8.51591 8.82154 9.05583 9.50121 10.97266 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021051 B = 0.005035 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.793348 B = 5559.379555 C = 5979.502606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.102 4.102 4 C -0.091 4.091 5 C -0.151 4.151 6 C 0.147 3.853 7 O -0.483 6.483 8 C -0.137 4.137 9 C 0.545 3.455 10 O -0.532 6.532 11 N -0.587 5.587 12 C 0.083 3.917 13 C 0.258 3.742 14 H 0.064 0.936 15 C -0.146 4.146 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.065 3.935 19 N -0.886 5.886 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.275 1.275 23 H -0.285 1.285 24 C -0.074 4.074 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.125 0.875 31 H 0.131 0.869 32 H 0.391 0.609 33 H 0.042 0.958 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.011 0.989 38 H 0.029 0.971 39 H 0.263 0.737 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.715 -11.634 13.982 18.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.102 4.102 4 C -0.110 4.110 5 C -0.170 4.170 6 C 0.101 3.899 7 O -0.294 6.294 8 C -0.141 4.141 9 C 0.331 3.669 10 O -0.409 6.409 11 N -0.318 5.318 12 C -0.061 4.061 13 C 0.158 3.842 14 H 0.081 0.919 15 C -0.204 4.204 16 C -0.565 4.565 17 H 0.077 0.923 18 C -0.137 4.137 19 N -0.524 5.524 20 Si 0.727 3.273 21 H -0.206 1.206 22 H -0.200 1.200 23 H -0.211 1.211 24 C -0.092 4.092 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.248 0.752 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.030 0.970 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.557 -11.465 13.659 18.185 hybrid contribution -1.271 0.932 -0.160 1.585 sum -4.828 -10.533 13.499 17.790 Atomic orbital electron populations 1.21768 0.94680 1.01643 1.02431 1.20510 0.96211 0.92303 1.02877 1.19794 1.01063 0.96609 0.92772 1.20938 0.98398 0.94058 0.97571 1.21326 1.02158 0.95982 0.97518 1.18453 0.94527 0.86124 0.90766 1.84803 1.35523 1.12882 1.96149 1.20642 1.02724 0.96161 0.94538 1.18058 0.84509 0.81079 0.83221 1.90773 1.25598 1.44089 1.80481 1.48192 1.17943 1.46765 1.18926 1.21732 0.88938 0.94433 1.00980 1.18969 0.99008 0.88535 0.77692 0.91859 1.22082 0.97235 0.98186 1.02924 1.21304 1.09556 1.17936 1.07714 0.92283 1.24896 0.96125 0.97150 0.95577 1.69882 1.32475 1.38369 1.11718 0.86490 0.81851 0.80837 0.78169 1.20612 1.19974 1.21075 1.21218 0.96530 0.93119 0.98362 0.92229 0.92488 0.92605 0.90920 0.91080 0.85708 0.85154 0.75182 0.94005 0.92735 0.90000 0.88802 0.96986 0.95166 0.92650 0.84963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.89 37.16 0.37 -0.79 16 2 C -0.08 -0.71 6.05 -27.88 -0.17 -0.87 16 3 C -0.10 -1.18 5.13 -104.67 -0.54 -1.71 16 4 C -0.09 -1.00 9.68 -39.54 -0.38 -1.38 16 5 C -0.15 -1.90 9.98 -39.48 -0.39 -2.29 16 6 C 0.15 2.37 6.69 -38.69 -0.26 2.11 16 7 O -0.48 -8.15 12.53 -28.45 -0.36 -8.50 16 8 C -0.14 -2.40 4.92 -104.85 -0.52 -2.92 16 9 C 0.55 12.10 6.97 -12.47 -0.09 12.01 16 10 O -0.53 -14.14 15.85 -4.49 -0.07 -14.21 16 11 N -0.59 -12.85 2.75 -176.49 -0.49 -13.33 16 12 C 0.08 1.43 8.00 59.85 0.48 1.90 16 13 C 0.26 6.67 2.63 -69.08 -0.18 6.49 16 14 H 0.06 1.91 6.91 -51.93 -0.36 1.55 16 15 C -0.15 -3.53 8.97 37.16 0.33 -3.20 16 16 C -0.53 -14.17 7.96 -34.44 -0.27 -14.45 16 17 H 0.06 1.56 7.42 -52.49 -0.39 1.17 16 18 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 19 N -0.89 -25.10 11.32 55.43 0.63 -24.47 16 20 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 C -0.07 -1.04 7.40 -39.20 -0.29 -1.33 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 29 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 30 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 32 H 0.39 4.96 9.06 45.56 0.41 5.38 16 33 H 0.04 0.62 7.05 -51.93 -0.37 0.26 16 34 H 0.05 0.82 6.24 -51.93 -0.32 0.50 16 35 H 0.08 1.48 7.10 -51.93 -0.37 1.11 16 36 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 37 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.13 1.77 6.24 -52.48 -0.33 1.44 16 LS Contribution 329.79 15.07 4.97 4.97 Total: -1.00 -33.03 329.79 -7.29 -40.32 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -4.95 Total: 4.10 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -2.00 Total: -4.74 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.14 Total: -37.81 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.43 Total: -22.71 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.03 -7.29 -40.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094107621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.056 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds