Wall clock time and date at job start Mon Mar 30 2020 02:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47077 * 2 1 4 4 C 1.38552 * 119.85179 * 89.99848 * 3 2 1 5 5 C 1.38047 * 120.39151 * 180.02562 * 4 3 2 6 6 C 1.38706 * 120.08663 * 359.97438 * 5 4 3 7 7 O 1.35658 * 120.15110 * 179.97438 * 6 5 4 8 8 C 1.40144 * 119.70084 * 0.02562 * 6 5 4 9 9 C 1.47530 * 120.19576 * 180.02562 * 8 6 5 10 10 O 1.21593 * 120.00154 * 48.47647 * 9 8 6 11 11 N 1.34771 * 120.00127 * 228.48451 * 9 8 6 12 12 C 1.46501 * 119.99827 * 355.61404 * 11 9 8 13 13 C 1.46501 * 120.00106 * 175.61582 * 11 9 8 14 14 H 1.09002 * 109.47307 * 359.97438 * 13 11 9 15 15 C 1.53004 * 109.47076 * 120.00054 * 13 11 9 16 16 C 1.50697 * 109.47075 * 239.99724 * 13 11 9 17 17 H 1.08002 * 120.00282 * 0.02562 * 16 13 11 18 18 C 1.37878 * 119.99831 * 180.02562 * 16 13 11 19 19 N 1.31520 * 120.00316 * 0.02562 * 18 16 13 20 20 Si 1.86806 * 120.00074 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.46901 * 270.00064 * 20 18 16 22 22 H 1.48494 * 109.46917 * 29.99546 * 20 18 16 23 23 H 1.48494 * 109.47037 * 149.99826 * 20 18 16 24 24 C 1.37794 * 119.85127 * 270.25689 * 3 2 1 25 25 H 1.09003 * 109.46941 * 60.00361 * 1 2 3 26 26 H 1.09004 * 109.47009 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47270 * 300.00082 * 1 2 3 28 28 H 1.08998 * 109.47270 * 239.99918 * 2 1 3 29 29 H 1.09004 * 109.47285 * 120.00053 * 2 1 3 30 30 H 1.08002 * 119.80194 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.96100 * 179.97438 * 5 4 3 32 32 H 0.96700 * 114.00302 * 270.01940 * 7 6 5 33 33 H 1.09004 * 109.46835 * 274.85091 * 12 11 9 34 34 H 1.09001 * 109.47275 * 34.85198 * 12 11 9 35 35 H 1.09004 * 109.47009 * 154.85171 * 12 11 9 36 36 H 1.08993 * 109.47230 * 180.02562 * 15 13 11 37 37 H 1.09004 * 109.46774 * 299.99939 * 15 13 11 38 38 H 1.08999 * 109.47628 * 59.99533 * 15 13 11 39 39 H 0.96990 * 119.99770 * 180.02562 * 19 18 16 40 40 H 1.08003 * 120.04419 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2621 2.0710 1.2017 5 6 2.7218 3.3727 1.2147 6 6 2.9573 4.0389 0.0211 7 8 3.4085 5.3182 0.0324 8 6 2.7261 3.3848 -1.1966 9 6 2.9735 4.0828 -2.4725 10 8 4.0201 4.6766 -2.6477 11 7 2.0395 4.0625 -3.4439 12 6 0.8204 3.2686 -3.2713 13 6 2.2434 4.8343 -4.6723 14 1 3.1987 5.3565 -4.6191 15 6 2.2451 3.8881 -5.8747 16 6 1.1303 5.8386 -4.8252 17 1 0.3493 5.8965 -4.0814 18 6 1.1088 6.6835 -5.9145 19 7 2.0596 6.6126 -6.8206 20 14 -0.2706 7.9289 -6.1036 21 1 -1.3874 7.3182 -6.8686 22 1 -0.7556 8.3379 -4.7611 23 1 0.2348 9.1204 -6.8316 24 6 2.2559 2.0693 -1.1951 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.0798 1.5567 2.1337 31 1 2.8982 3.8730 2.1554 32 1 2.7062 5.9830 0.0355 33 1 1.0098 2.2404 -3.5796 34 1 0.5217 3.2846 -2.2232 35 1 0.0227 3.6902 -3.8830 36 1 2.3972 4.4622 -6.7886 37 1 3.0503 3.1616 -5.7641 38 1 1.2897 3.3661 -5.9278 39 1 2.0446 7.2072 -7.5866 40 1 2.0709 1.5600 -2.1294 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094107621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:39 Heat of formation + Delta-G solvation = -79.273558 kcal Electronic energy + Delta-G solvation = -21948.601171 eV Core-core repulsion = 18727.545270 eV Total energy + Delta-G solvation = -3221.055901 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.56204 -39.79237 -38.18099 -37.09819 -34.94009 -34.22388 -32.62749 -30.81194 -29.54697 -27.73415 -27.33129 -25.14834 -24.51721 -23.16203 -21.85278 -20.25445 -19.20577 -18.56640 -17.92562 -17.34762 -17.07179 -16.69565 -16.19658 -15.74463 -15.46274 -14.91264 -14.70853 -14.57095 -14.33841 -14.27775 -13.86376 -13.59237 -13.26246 -13.21872 -13.00047 -12.88228 -12.70838 -12.65899 -12.45624 -12.23381 -12.14655 -11.99271 -11.73082 -11.60409 -11.23196 -10.71584 -10.52129 -9.94149 -9.50173 -9.33482 -8.16317 -6.33632 -0.03800 0.26925 1.40583 1.42453 1.52357 1.78882 2.26484 2.45609 2.64513 3.11621 3.23704 3.58857 3.84961 3.90540 4.26939 4.32885 4.38846 4.51725 4.60710 4.62830 4.66366 4.72298 4.82662 4.88747 4.95566 4.99921 5.02960 5.13787 5.18802 5.28867 5.32731 5.44470 5.50421 5.57195 5.61113 5.64444 5.84603 6.00672 6.12915 6.72181 6.73315 6.76746 7.26590 7.42898 8.88506 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021051 B = 0.005035 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.793348 B = 5559.379555 C = 5979.502606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.093 4.093 4 C -0.074 4.074 5 C -0.145 4.145 6 C 0.123 3.877 7 O -0.508 6.508 8 C -0.168 4.168 9 C 0.539 3.461 10 O -0.594 6.594 11 N -0.592 5.592 12 C 0.083 3.917 13 C 0.261 3.739 14 H 0.005 0.995 15 C -0.131 4.131 16 C -0.538 4.538 17 H 0.062 0.938 18 C 0.015 3.985 19 N -0.918 5.918 20 Si 0.968 3.032 21 H -0.266 1.266 22 H -0.270 1.270 23 H -0.286 1.286 24 C -0.076 4.076 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.167 0.833 31 H 0.156 0.844 32 H 0.402 0.598 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.017 0.983 38 H 0.049 0.951 39 H 0.265 0.735 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.093 -13.791 16.369 22.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.093 4.093 4 C -0.092 4.092 5 C -0.163 4.163 6 C 0.078 3.922 7 O -0.320 6.320 8 C -0.172 4.172 9 C 0.328 3.672 10 O -0.476 6.476 11 N -0.321 5.321 12 C -0.059 4.059 13 C 0.159 3.841 14 H 0.023 0.977 15 C -0.189 4.189 16 C -0.577 4.577 17 H 0.080 0.920 18 C -0.185 4.185 19 N -0.556 5.556 20 Si 0.793 3.207 21 H -0.191 1.191 22 H -0.195 1.195 23 H -0.212 1.212 24 C -0.094 4.094 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.185 0.815 31 H 0.173 0.827 32 H 0.260 0.740 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.036 0.964 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.980 -13.659 16.062 21.917 hybrid contribution -0.511 1.527 -0.819 1.807 sum -6.492 -12.132 15.243 20.535 Atomic orbital electron populations 1.21768 0.93884 1.02602 1.02202 1.20596 0.96729 0.90188 1.04195 1.20160 0.99398 0.97888 0.91854 1.21447 0.95615 0.93115 0.99024 1.21581 1.01206 0.96605 0.96901 1.18817 0.95781 0.85978 0.91659 1.84760 1.36953 1.14011 1.96291 1.20375 1.06738 0.97704 0.92334 1.18842 0.83425 0.80322 0.84572 1.90718 1.28059 1.47042 1.81800 1.48173 1.19527 1.46659 1.17779 1.21942 0.86582 0.94868 1.02493 1.18589 0.96089 0.89252 0.80138 0.97653 1.21869 0.98424 0.97626 1.01028 1.21527 1.09666 1.18593 1.07902 0.92017 1.25772 0.98525 0.98995 0.95180 1.70033 1.34219 1.39191 1.12196 0.85402 0.78939 0.78084 0.78259 1.19091 1.19467 1.21161 1.21285 0.96445 0.91769 0.99932 0.93216 0.91012 0.92127 0.90690 0.88816 0.81521 0.82679 0.73981 0.91295 0.90380 0.90807 0.91231 0.96390 0.93177 0.92575 0.84620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.89 71.98 0.71 -0.97 16 2 C -0.08 -1.02 6.05 29.85 0.18 -0.84 16 3 C -0.09 -1.79 5.13 -19.89 -0.10 -1.89 16 4 C -0.07 -1.28 9.68 22.30 0.22 -1.07 16 5 C -0.14 -3.22 9.98 22.34 0.22 -2.99 16 6 C 0.12 3.94 6.69 22.84 0.15 4.09 16 7 O -0.51 -17.80 12.53 -80.39 -1.01 -18.80 16 8 C -0.17 -5.93 4.92 -20.01 -0.10 -6.03 16 9 C 0.54 25.12 6.97 86.69 0.60 25.73 16 10 O -0.59 -34.02 15.85 5.33 0.08 -33.93 16 11 N -0.59 -26.73 2.75 -830.55 -2.29 -29.01 16 12 C 0.08 2.79 8.00 127.77 1.02 3.81 16 13 C 0.26 14.18 2.63 44.25 0.12 14.29 16 14 H 0.01 0.36 6.91 -2.39 -0.02 0.34 16 15 C -0.13 -6.54 8.97 71.98 0.65 -5.89 16 16 C -0.54 -29.77 7.96 25.60 0.20 -29.56 16 17 H 0.06 3.29 7.42 -2.91 -0.02 3.27 16 18 C 0.01 0.83 5.30 84.65 0.45 1.27 16 19 N -0.92 -53.69 11.32 21.45 0.24 -53.45 16 20 Si 0.97 43.20 29.54 68.60 2.03 45.23 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 24 C -0.08 -2.01 7.40 22.52 0.17 -1.85 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 29 H 0.09 0.84 8.08 -2.38 -0.02 0.82 16 30 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 31 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.40 10.86 9.06 -74.06 -0.67 10.19 16 33 H 0.07 1.93 7.05 -2.39 -0.02 1.91 16 34 H 0.08 2.24 6.24 -2.39 -0.01 2.23 16 35 H 0.07 2.59 7.10 -2.38 -0.02 2.58 16 36 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 37 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.05 2.24 7.67 -2.39 -0.02 2.22 16 39 H 0.27 14.65 8.31 -92.72 -0.77 13.88 16 40 H 0.14 3.40 6.24 -2.91 -0.02 3.38 16 Total: -1.00 -76.90 329.79 3.93 -72.97 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.38 Total: 18.89 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 4.49 Total: -1.89 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -2.04 Total: -82.46 kcal Atomic # 8 Polarization: -51.82 SS G_CDS: -0.92 Total: -52.74 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -76.90 3.93 -72.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094107621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.307 kcal (2) G-P(sol) polarization free energy of solvation -76.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds