Wall clock time and date at job start Mon Mar 30 2020 02:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.46855 * 2 1 4 4 C 1.35158 * 125.47942 * 89.98347 * 3 2 1 5 5 C 1.40319 * 107.20123 * 179.77346 * 4 3 2 6 6 C 1.37939 * 106.53087 * 0.35334 * 5 4 3 7 7 C 1.41615 * 126.10258 * 179.90705 * 6 5 4 8 8 C 1.35623 * 120.00049 * 179.43767 * 7 6 5 9 9 C 1.41545 * 120.00087 * 179.97438 * 8 7 6 10 10 O 1.21775 * 120.00316 * 0.02562 * 9 8 7 11 11 N 1.34786 * 120.00027 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99732 * 359.97438 * 11 9 8 13 13 C 1.52997 * 109.47059 * 90.00289 * 12 11 9 14 14 C 1.46496 * 119.99746 * 180.02562 * 11 9 8 15 15 C 1.50699 * 109.47352 * 89.99947 * 14 11 9 16 16 H 1.07993 * 120.00228 * 359.97438 * 15 14 11 17 17 C 1.37879 * 120.00077 * 179.97438 * 15 14 11 18 18 N 1.31516 * 119.99915 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00141 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47025 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47085 * 120.00242 * 19 17 15 22 22 H 1.48503 * 109.46927 * 239.99943 * 19 17 15 23 23 O 1.34017 * 125.48476 * 269.97612 * 3 2 1 24 24 H 1.09002 * 109.47261 * 299.99366 * 1 2 3 25 25 H 1.09001 * 109.47882 * 59.99242 * 1 2 3 26 26 H 1.09003 * 109.47457 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46555 * 240.00744 * 2 1 3 28 28 H 1.08996 * 109.47446 * 120.00601 * 2 1 3 29 29 H 1.07996 * 126.39846 * 0.02562 * 4 3 2 30 30 H 1.08000 * 126.73264 * 180.24230 * 5 4 3 31 31 H 1.07997 * 120.00286 * 359.71476 * 7 6 5 32 32 H 1.08004 * 119.99738 * 0.02562 * 8 7 6 33 33 H 1.09004 * 109.46802 * 210.00461 * 12 11 9 34 34 H 1.08998 * 109.47247 * 329.99862 * 12 11 9 35 35 H 1.09003 * 109.46985 * 179.97438 * 13 12 11 36 36 H 1.09000 * 109.47015 * 299.99610 * 13 12 11 37 37 H 1.09001 * 109.46743 * 59.99857 * 13 12 11 38 38 H 1.09003 * 109.46685 * 209.99761 * 14 11 9 39 39 H 1.09002 * 109.47236 * 329.99355 * 14 11 9 40 40 H 0.96997 * 119.99939 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2934 2.1605 1.1006 5 6 2.7426 3.4149 0.6605 6 6 2.7241 3.3769 -0.7182 7 6 3.0978 4.4308 -1.5871 8 6 3.0421 4.2541 -2.9306 9 6 3.4151 5.3077 -3.7991 10 8 3.7865 6.3727 -3.3401 11 7 3.3593 5.1322 -5.1344 12 6 2.9131 3.8508 -5.6866 13 6 1.3963 3.8813 -5.8847 14 6 3.7459 6.2225 -6.0332 15 6 5.2190 6.1258 -6.3356 16 1 5.8085 5.3320 -5.9014 17 6 5.8143 7.0510 -7.1667 18 7 5.0966 8.0181 -7.6952 19 14 7.6406 6.9316 -7.5411 20 1 8.2169 5.7639 -6.8273 21 1 7.8362 6.7644 -9.0035 22 1 8.3205 8.1722 -7.0895 23 8 2.2919 2.1541 -1.0913 24 1 -0.3634 0.5137 0.8901 25 1 -0.3635 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.1815 1.8438 2.1270 30 1 3.0421 4.2475 1.2799 31 1 3.4314 5.3738 -1.1800 32 1 2.7124 3.3096 -3.3378 33 1 3.4014 3.6788 -6.6459 34 1 3.1735 3.0476 -4.9973 35 1 1.0643 2.9280 -6.2960 36 1 0.9080 4.0532 -4.9254 37 1 1.1360 4.6845 -6.5741 38 1 3.1787 6.1468 -6.9610 39 1 3.5350 7.1793 -5.5555 40 1 5.5153 8.6687 -8.2801 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122959288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:09 Heat of formation + Delta-G solvation = -34.043616 kcal Electronic energy + Delta-G solvation = -20866.733433 eV Core-core repulsion = 17647.638849 eV Total energy + Delta-G solvation = -3219.094584 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.58266 -40.92475 -37.09241 -35.72675 -34.96496 -34.60858 -33.48528 -31.64728 -30.00869 -28.60201 -26.08235 -24.71727 -24.18639 -22.94042 -22.54288 -21.05056 -19.51082 -18.74847 -18.48347 -17.47473 -17.22189 -16.95184 -16.32038 -15.96480 -15.69072 -15.19297 -14.92782 -14.68183 -14.35521 -14.01413 -13.91227 -13.72871 -13.45618 -13.42679 -13.29148 -13.20919 -12.99992 -12.68748 -12.49368 -12.37780 -12.20774 -11.93830 -11.88463 -11.73359 -11.60654 -10.76914 -10.75404 -10.65944 -9.50896 -8.83396 -8.23021 -6.38732 -0.56666 1.11770 1.35339 1.37969 1.50279 1.71956 1.86159 2.29735 2.47142 2.54926 3.05523 3.59713 3.77804 3.93729 4.00265 4.12330 4.21390 4.30256 4.37772 4.38570 4.56351 4.59018 4.66649 4.82359 4.87876 4.93852 4.96882 4.99350 5.03795 5.08836 5.16173 5.20968 5.29940 5.34868 5.36867 5.56592 5.56667 5.84798 6.05165 6.12129 6.68035 6.75820 7.25593 7.43259 8.83935 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026293 B = 0.003535 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.675050 B = 7919.913572 C = 8320.393152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.047 4.047 3 C 0.007 3.993 4 C -0.220 4.220 5 C -0.153 4.153 6 C -0.038 4.038 7 C 0.015 3.985 8 C -0.213 4.213 9 C 0.530 3.470 10 O -0.605 6.605 11 N -0.598 5.598 12 C 0.099 3.901 13 C -0.159 4.159 14 C 0.261 3.739 15 C -0.544 4.544 16 H 0.051 0.949 17 C 0.007 3.993 18 N -0.928 5.928 19 Si 0.971 3.029 20 H -0.268 1.268 21 H -0.267 1.267 22 H -0.280 1.280 23 O -0.179 6.179 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.121 0.879 29 H 0.181 0.819 30 H 0.173 0.827 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.042 0.958 38 H 0.024 0.976 39 H -0.002 1.002 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.537 -19.652 16.094 27.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.084 4.084 3 C -0.044 4.044 4 C -0.238 4.238 5 C -0.172 4.172 6 C -0.087 4.087 7 C -0.005 4.005 8 C -0.234 4.234 9 C 0.323 3.677 10 O -0.490 6.490 11 N -0.328 5.328 12 C -0.023 4.023 13 C -0.217 4.217 14 C 0.140 3.860 15 C -0.582 4.582 16 H 0.070 0.930 17 C -0.192 4.192 18 N -0.568 5.568 19 Si 0.795 3.205 20 H -0.192 1.192 21 H -0.192 1.192 22 H -0.206 1.206 23 O -0.076 6.076 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.139 0.861 29 H 0.198 0.802 30 H 0.191 0.809 31 H 0.170 0.830 32 H 0.166 0.834 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.042 0.958 39 H 0.016 0.984 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.389 -19.064 15.832 26.500 hybrid contribution 0.958 0.863 -0.517 1.389 sum -8.431 -18.202 15.314 25.237 Atomic orbital electron populations 1.21794 0.93121 1.03538 1.02179 1.20392 0.96903 0.85272 1.05831 1.23566 1.00900 0.96253 0.83697 1.21870 1.07383 0.93805 1.00783 1.22722 1.01721 1.00240 0.92530 1.19749 1.09526 0.85351 0.94028 1.20673 0.92224 0.95540 0.92070 1.22127 1.07189 0.99928 0.94135 1.17560 0.78573 0.88351 0.83221 1.90746 1.50844 1.30495 1.76895 1.48218 1.63173 1.15593 1.05783 1.21764 0.95918 0.84361 1.00274 1.22142 0.94531 1.03178 1.01862 1.18735 0.94490 0.85065 0.87709 1.21729 0.95085 1.12819 1.28612 0.93033 1.25888 1.03486 0.94407 0.95402 1.70062 1.38054 1.15908 1.32771 0.85324 0.78734 0.78115 0.78357 1.19246 1.19190 1.20577 1.84034 1.65077 1.22425 1.36033 0.91929 0.93638 0.89547 0.89423 0.86104 0.80196 0.80925 0.83028 0.83364 0.90553 0.88784 0.88450 0.92709 0.93913 0.95835 0.98393 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.89 71.98 0.71 -0.67 16 2 C -0.05 -0.49 6.46 29.85 0.19 -0.29 16 3 C 0.01 0.14 6.55 24.97 0.16 0.30 16 4 C -0.22 -3.72 10.76 22.07 0.24 -3.48 16 5 C -0.15 -3.20 10.90 22.71 0.25 -2.96 16 6 C -0.04 -1.01 6.84 23.03 0.16 -0.85 16 7 C 0.02 0.47 9.39 22.50 0.21 0.68 16 8 C -0.21 -7.49 8.68 22.48 0.20 -7.29 16 9 C 0.53 24.57 7.44 85.06 0.63 25.20 16 10 O -0.60 -33.59 15.69 -4.59 -0.07 -33.66 16 11 N -0.60 -27.75 2.46 -836.83 -2.06 -29.81 16 12 C 0.10 3.38 5.81 86.38 0.50 3.89 16 13 C -0.16 -4.47 10.24 71.98 0.74 -3.73 16 14 C 0.26 14.91 5.16 85.63 0.44 15.35 16 15 C -0.54 -32.80 9.39 25.60 0.24 -32.56 16 16 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 17 C 0.01 0.42 5.46 84.65 0.46 0.88 16 18 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 19 Si 0.97 46.21 29.54 68.60 2.03 48.23 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 23 O -0.18 -4.45 10.18 -6.19 -0.06 -4.52 16 24 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 30 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 31 H 0.15 4.88 7.46 -2.91 -0.02 4.86 16 32 H 0.15 4.41 5.75 -2.91 -0.02 4.40 16 33 H 0.08 2.69 8.07 -2.38 -0.02 2.67 16 34 H 0.09 2.68 6.08 -2.39 -0.01 2.67 16 35 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.02 1.36 8.07 -2.39 -0.02 1.34 16 39 H 0.00 -0.13 7.42 -2.39 -0.02 -0.15 16 40 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -78.22 345.67 6.27 -71.95 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 1.02 Total: 10.66 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 5.13 Total: -5.52 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -1.77 Total: -87.14 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.13 Total: -38.18 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Total: -78.22 6.27 -71.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122959288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.909 kcal (2) G-P(sol) polarization free energy of solvation -78.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds