Wall clock time and date at job start Mon Mar 30 2020 02:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.46961 * 2 1 4 4 C 1.35159 * 125.47872 * 89.99961 * 3 2 1 5 5 C 1.40316 * 107.19743 * 179.71742 * 4 3 2 6 6 C 1.37955 * 106.53243 * 0.41178 * 5 4 3 7 7 C 1.41605 * 126.10509 * 179.84986 * 6 5 4 8 8 C 1.35623 * 119.99715 * 179.71708 * 7 6 5 9 9 C 1.41555 * 119.99742 * 180.02562 * 8 7 6 10 10 O 1.21785 * 119.99903 * 359.97438 * 9 8 7 11 11 N 1.34768 * 120.00094 * 179.97438 * 9 8 7 12 12 C 1.46506 * 120.00203 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.47040 * 35.00530 * 12 11 9 14 14 C 1.50705 * 109.46971 * 155.00069 * 12 11 9 15 15 H 1.07996 * 120.00204 * 0.02562 * 14 12 11 16 16 C 1.37874 * 119.99808 * 180.02562 * 14 12 11 17 17 N 1.31522 * 120.00148 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00064 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47096 * 89.99755 * 18 16 14 20 20 H 1.48495 * 109.47232 * 209.99686 * 18 16 14 21 21 H 1.48501 * 109.46772 * 329.99925 * 18 16 14 22 22 C 1.52995 * 109.47472 * 275.00443 * 12 11 9 23 23 C 1.52999 * 109.47004 * 64.99503 * 22 12 11 24 24 O 1.34017 * 125.48138 * 269.96820 * 3 2 1 25 25 H 1.08994 * 109.47284 * 300.00224 * 1 2 3 26 26 H 1.08996 * 109.47320 * 60.00104 * 1 2 3 27 27 H 1.09003 * 109.47238 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47284 * 239.99776 * 2 1 3 29 29 H 1.09004 * 109.47033 * 120.00092 * 2 1 3 30 30 H 1.07995 * 126.40251 * 359.97438 * 4 3 2 31 31 H 1.08002 * 126.73642 * 180.28356 * 5 4 3 32 32 H 1.08000 * 119.99573 * 359.71336 * 7 6 5 33 33 H 1.07991 * 120.00440 * 359.97438 * 8 7 6 34 34 H 0.97005 * 119.99960 * 0.02562 * 11 9 8 35 35 H 0.96993 * 119.99877 * 180.02562 * 17 16 14 36 36 H 1.08997 * 109.47134 * 184.99773 * 22 12 11 37 37 H 1.09005 * 109.47104 * 305.00033 * 22 12 11 38 38 H 1.08999 * 109.47066 * 180.02562 * 23 22 12 39 39 H 1.08997 * 109.47396 * 300.00110 * 23 22 12 40 40 H 1.08999 * 109.47073 * 60.00639 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2937 2.1605 1.1006 5 6 2.7441 3.4144 0.6605 6 6 2.7246 3.3767 -0.7184 7 6 3.0979 4.4306 -1.5873 8 6 3.0358 4.2560 -2.9308 9 6 3.4094 5.3094 -3.7995 10 8 3.7861 6.3726 -3.3403 11 7 3.3482 5.1357 -5.1345 12 6 3.7344 6.2261 -6.0336 13 1 4.5580 6.7869 -5.5918 14 6 4.1694 5.6546 -7.3585 15 1 4.1589 4.5862 -7.5153 16 6 4.5808 6.4959 -8.3704 17 7 4.5931 7.7971 -8.1796 18 14 5.1193 5.7876 -10.0128 19 1 3.9448 5.6820 -10.9153 20 1 6.1365 6.6786 -10.6265 21 1 5.7047 4.4392 -9.8023 22 6 2.5399 7.1580 -6.2475 23 6 2.1770 7.8340 -4.9238 24 8 2.2921 2.1541 -1.0913 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.1814 1.8439 2.1270 31 1 3.0447 4.2467 1.2797 32 1 3.4318 5.3735 -1.1801 33 1 2.7022 3.3130 -3.3380 34 1 3.0478 4.2889 -5.5002 35 1 4.8822 8.3889 -8.8916 36 1 2.7995 7.9180 -6.9845 37 1 1.6880 6.5802 -6.6060 38 1 1.3257 8.4975 -5.0761 39 1 1.9174 7.0740 -4.1869 40 1 3.0288 8.4118 -4.5654 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129760533.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:28 Heat of formation + Delta-G solvation = -23.771955 kcal Electronic energy + Delta-G solvation = -20725.366619 eV Core-core repulsion = 17506.717448 eV Total energy + Delta-G solvation = -3218.649171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.67340 -39.18175 -35.36060 -34.67349 -33.62467 -32.63256 -32.30984 -30.89239 -28.42005 -26.92583 -24.76295 -23.15701 -22.30139 -21.81534 -20.47579 -19.53649 -19.14978 -17.22174 -16.81019 -16.27693 -15.73617 -15.32972 -14.79686 -14.68845 -14.43692 -14.24547 -13.39700 -13.36469 -13.09567 -12.77779 -12.66942 -12.46359 -12.08663 -12.04492 -11.77346 -11.50862 -11.36756 -11.22345 -10.97051 -10.81486 -10.47863 -10.30103 -10.14406 -9.86770 -9.60209 -9.09946 -9.00342 -8.48117 -7.95739 -7.67420 -6.10467 -4.19750 0.58821 2.05614 2.72981 2.76519 3.25497 3.32408 3.34765 4.07733 4.19659 4.38731 4.45446 4.70280 4.79124 4.88042 5.01245 5.14030 5.20953 5.26176 5.44357 5.48596 5.60460 5.68350 5.71386 5.81613 6.04163 6.17155 6.36328 6.42594 6.46094 6.49963 6.69834 7.03608 7.08108 7.23789 7.40120 7.48539 7.64835 7.76902 7.93181 8.20533 8.69644 8.79854 9.15927 9.47578 10.94925 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025899 B = 0.003280 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.872735 B = 8533.895190 C = 9126.138484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.046 4.046 3 C -0.003 4.003 4 C -0.212 4.212 5 C -0.176 4.176 6 C 0.008 3.992 7 C -0.023 4.023 8 C -0.178 4.178 9 C 0.528 3.472 10 O -0.554 6.554 11 N -0.700 5.700 12 C 0.268 3.732 13 H 0.051 0.949 14 C -0.534 4.534 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.882 5.882 18 Si 0.901 3.099 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.127 4.127 23 C -0.137 4.137 24 O -0.163 6.163 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.149 0.851 31 H 0.154 0.846 32 H 0.160 0.840 33 H 0.123 0.877 34 H 0.389 0.611 35 H 0.264 0.736 36 H 0.099 0.901 37 H 0.030 0.970 38 H 0.022 0.978 39 H 0.038 0.962 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.886 -13.458 15.907 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.083 4.083 3 C -0.054 4.054 4 C -0.231 4.231 5 C -0.195 4.195 6 C -0.041 4.041 7 C -0.043 4.043 8 C -0.198 4.198 9 C 0.317 3.683 10 O -0.436 6.436 11 N -0.347 5.347 12 C 0.167 3.833 13 H 0.068 0.932 14 C -0.573 4.573 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.520 5.520 18 Si 0.728 3.272 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.166 4.166 23 C -0.195 4.195 24 O -0.059 6.059 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.167 0.833 31 H 0.172 0.828 32 H 0.177 0.823 33 H 0.141 0.859 34 H 0.221 0.779 35 H 0.074 0.926 36 H 0.117 0.883 37 H 0.049 0.951 38 H 0.041 0.959 39 H 0.057 0.943 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.592 -12.601 15.764 21.231 hybrid contribution 0.138 -0.686 -0.949 1.179 sum -6.455 -13.288 14.815 20.922 Atomic orbital electron populations 1.21798 0.93804 1.02382 1.02840 1.20132 0.96478 0.87435 1.04227 1.22651 1.03409 0.95208 0.84150 1.21451 1.07637 0.94686 0.99286 1.22271 1.04833 0.99170 0.93233 1.19958 1.05670 0.84932 0.93570 1.20612 0.96020 0.95357 0.92291 1.22429 1.02600 1.00233 0.94585 1.16916 0.79994 0.87872 0.83558 1.90802 1.48328 1.27807 1.76674 1.46487 1.64504 1.18134 1.05576 1.18802 0.93440 0.83832 0.87276 0.93168 1.21247 1.45262 0.93451 0.97310 0.92101 1.24888 0.95177 0.94796 0.98836 1.69897 1.46538 1.02227 1.33321 0.86456 0.78427 0.78938 0.83337 1.20559 1.21078 1.19870 1.21929 0.97479 1.00395 0.96777 1.21840 0.99312 0.99454 0.98846 1.84046 1.64727 1.22456 1.34716 0.92140 0.92090 0.91565 0.89895 0.88811 0.83315 0.82789 0.82264 0.85868 0.77859 0.92578 0.88288 0.95074 0.95901 0.94252 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 37.16 0.37 -0.60 16 2 C -0.05 -0.32 6.46 -27.88 -0.18 -0.50 16 3 C 0.00 -0.03 6.56 -35.40 -0.23 -0.26 16 4 C -0.21 -2.15 10.76 -39.90 -0.43 -2.58 16 5 C -0.18 -2.01 10.90 -38.90 -0.42 -2.44 16 6 C 0.01 0.11 6.84 -38.40 -0.26 -0.16 16 7 C -0.02 -0.33 9.39 -39.23 -0.37 -0.70 16 8 C -0.18 -2.88 9.41 -39.25 -0.37 -3.25 16 9 C 0.53 10.76 6.12 -15.00 -0.09 10.67 16 10 O -0.55 -12.98 13.24 5.11 0.07 -12.91 16 11 N -0.70 -14.90 5.01 -57.85 -0.29 -15.19 16 12 C 0.27 6.85 2.24 -69.08 -0.15 6.69 16 13 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 14 C -0.53 -14.26 8.73 -34.44 -0.30 -14.56 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 17 N -0.88 -24.90 11.29 55.43 0.63 -24.27 16 18 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 C -0.13 -3.14 5.45 -26.73 -0.15 -3.28 16 23 C -0.14 -3.12 8.51 37.16 0.32 -2.81 16 24 O -0.16 -2.17 10.18 4.70 0.05 -2.12 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 32 H 0.16 2.31 7.46 -52.49 -0.39 1.92 16 33 H 0.12 1.76 7.72 -52.49 -0.41 1.36 16 34 H 0.39 7.25 8.50 -40.82 -0.35 6.90 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 36 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 40 H 0.05 1.22 7.84 -51.93 -0.41 0.82 16 LS Contribution 336.98 15.07 5.08 5.08 Total: -1.00 -30.90 336.98 -7.75 -38.65 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -5.89 Total: 7.11 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -2.37 Total: -12.07 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.34 Total: -39.46 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.12 Total: -15.03 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.90 -7.75 -38.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129760533.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.876 kcal (2) G-P(sol) polarization free energy of solvation -30.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds