Wall clock time and date at job start Mon Mar 30 2020 01:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34506 * 125.79235 * 2 1 4 4 C 1.41385 * 106.84281 * 179.75314 * 3 2 1 5 5 C 1.34513 * 106.83863 * 0.36841 * 4 3 2 6 6 C 1.50699 * 125.78923 * 179.88813 * 5 4 3 7 7 H 1.09001 * 109.83690 * 22.41627 * 6 5 4 8 8 C 1.46239 * 109.84391 * 143.40679 * 6 5 4 9 9 C 1.52525 * 114.27596 * 177.91903 * 8 6 5 10 10 C 1.50123 * 105.41402 * 270.59196 * 9 8 6 11 11 C 1.54842 * 110.81813 * 97.68302 * 10 9 8 12 12 C 1.54405 * 110.06911 * 321.07611 * 11 10 9 13 13 N 1.43438 * 116.39082 * 318.65118 * 12 11 10 14 14 C 1.34780 * 120.53570 * 271.73080 * 13 12 11 15 15 O 1.21679 * 120.00016 * 174.40499 * 14 13 12 16 16 C 1.46377 * 119.99758 * 354.40155 * 14 13 12 17 17 H 1.07997 * 120.00172 * 0.02562 * 16 14 13 18 18 C 1.40048 * 119.99597 * 180.02562 * 16 14 13 19 19 N 1.30670 * 120.00589 * 359.97438 * 18 16 14 20 20 Si 1.86808 * 119.99804 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47300 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47384 * 119.99966 * 20 18 16 23 23 H 1.48503 * 109.46955 * 239.99872 * 20 18 16 24 24 O 1.34300 * 125.78477 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47267 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46824 * 300.00050 * 1 2 3 27 27 H 1.08994 * 109.47242 * 59.99767 * 1 2 3 28 28 H 1.08006 * 126.58025 * 359.97438 * 3 2 1 29 29 H 1.07997 * 126.57836 * 180.23535 * 4 3 2 30 30 H 1.08997 * 108.52414 * 299.15950 * 8 6 5 31 31 H 1.08997 * 108.52043 * 56.83038 * 8 6 5 32 32 H 1.09003 * 110.25258 * 29.56170 * 9 8 6 33 33 H 1.08999 * 110.25392 * 151.47632 * 9 8 6 34 34 H 1.09002 * 109.21209 * 218.02800 * 10 9 8 35 35 H 1.09001 * 109.20954 * 337.38536 * 10 9 8 36 36 H 1.09001 * 109.35917 * 81.34079 * 11 10 9 37 37 H 1.08998 * 109.36312 * 201.06621 * 11 10 9 38 38 H 1.09001 * 107.89365 * 196.93169 * 12 11 10 39 39 H 1.09004 * 108.10385 * 80.53476 * 12 11 10 40 40 H 0.96998 * 120.00553 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0910 0.0000 4 6 3.6309 0.6319 0.0058 5 6 3.5814 -0.7123 0.0008 6 6 4.7706 -1.6380 0.0017 7 1 5.6433 -1.1187 0.3978 8 6 4.4809 -2.8174 0.8164 9 6 5.6033 -3.8497 0.8466 10 6 5.3320 -4.7682 -0.3094 11 6 6.1834 -4.3702 -1.5400 12 6 6.2619 -2.8325 -1.6551 13 7 5.0496 -2.1110 -1.3959 14 6 4.1724 -1.8665 -2.3895 15 8 3.1018 -1.3443 -2.1411 16 6 4.5076 -2.2292 -3.7674 17 1 5.4577 -2.6930 -3.9878 18 6 3.5964 -1.9746 -4.8000 19 7 2.4466 -1.4138 -4.5333 20 14 4.0239 -2.4381 -6.5584 21 1 5.3743 -3.0547 -6.5934 22 1 3.0232 -3.4074 -7.0721 23 1 4.0143 -1.2199 -7.4076 24 8 2.2924 -1.0895 0.0005 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.9666 2.1204 -0.0004 29 1 4.5212 1.2432 0.0110 30 1 4.2817 -2.4925 1.8376 31 1 3.5833 -3.2963 0.4254 32 1 6.5693 -3.3606 0.7211 33 1 5.5810 -4.4040 1.7849 34 1 5.5756 -5.7905 -0.0202 35 1 4.2755 -4.7120 -0.5718 36 1 7.1885 -4.7777 -1.4310 37 1 5.7253 -4.7749 -2.4425 38 1 6.5930 -2.5887 -2.6646 39 1 7.0228 -2.4791 -0.9593 40 1 1.8156 -1.2372 -5.2485 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153867396.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:09 Heat of formation + Delta-G solvation = -34.096237 kcal Electronic energy + Delta-G solvation = -23155.775229 eV Core-core repulsion = 19936.678364 eV Total energy + Delta-G solvation = -3219.096865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.21674 -40.49364 -37.80521 -34.87429 -34.25880 -34.06681 -33.73128 -31.96030 -28.86641 -27.80147 -26.86072 -25.03260 -23.36490 -22.33982 -21.48178 -20.82941 -20.36116 -18.37109 -17.85603 -17.08281 -16.74258 -16.51606 -16.01127 -15.71314 -15.45851 -14.99471 -14.76856 -14.57232 -13.97413 -13.75876 -13.63313 -13.48088 -13.46338 -13.38640 -13.06092 -12.89830 -12.73302 -12.63373 -12.47508 -12.09461 -12.01661 -11.85962 -11.39288 -11.32491 -11.20829 -10.91888 -10.47831 -9.84779 -9.00567 -8.65432 -8.12612 -6.76317 1.10004 1.35781 1.36643 1.52411 1.89719 2.22910 2.43133 2.52813 2.89383 3.56859 3.71775 4.00314 4.06028 4.15553 4.24447 4.29635 4.31491 4.39282 4.47591 4.57514 4.67437 4.72374 4.75530 4.89381 4.93431 5.03382 5.08640 5.11252 5.19400 5.24482 5.35369 5.40187 5.41931 5.49045 5.54438 5.59226 5.87282 5.97120 6.20832 6.37195 6.63671 6.93641 7.55065 8.55171 8.74307 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013036 B = 0.009496 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.438438 B = 2947.812701 C = 4554.366855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.035 4.035 3 C -0.228 4.228 4 C -0.253 4.253 5 C 0.040 3.960 6 C 0.225 3.775 7 H 0.115 0.885 8 C -0.127 4.127 9 C -0.100 4.100 10 C -0.113 4.113 11 C -0.131 4.131 12 C 0.123 3.877 13 N -0.633 5.633 14 C 0.537 3.463 15 O -0.579 6.579 16 C -0.563 4.563 17 H 0.085 0.915 18 C 0.033 3.967 19 N -0.817 5.817 20 Si 0.984 3.016 21 H -0.247 1.247 22 H -0.273 1.273 23 H -0.272 1.272 24 O -0.175 6.175 25 H 0.064 0.936 26 H 0.109 0.891 27 H 0.078 0.922 28 H 0.153 0.847 29 H 0.144 0.856 30 H 0.073 0.927 31 H 0.031 0.969 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.021 0.979 36 H 0.099 0.901 37 H 0.038 0.962 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.945 -2.459 9.263 11.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.086 4.086 3 C -0.247 4.247 4 C -0.273 4.273 5 C -0.011 4.011 6 C 0.123 3.877 7 H 0.132 0.868 8 C -0.165 4.165 9 C -0.137 4.137 10 C -0.150 4.150 11 C -0.170 4.170 12 C -0.002 4.002 13 N -0.371 5.371 14 C 0.342 3.658 15 O -0.463 6.463 16 C -0.599 4.599 17 H 0.103 0.897 18 C -0.182 4.182 19 N -0.447 5.447 20 Si 0.804 3.196 21 H -0.170 1.170 22 H -0.198 1.198 23 H -0.197 1.197 24 O -0.071 6.071 25 H 0.083 0.917 26 H 0.128 0.872 27 H 0.097 0.903 28 H 0.171 0.829 29 H 0.162 0.838 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.040 0.960 36 H 0.117 0.883 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.096 -2.407 9.341 10.909 hybrid contribution -0.281 0.170 -1.307 1.348 sum 4.814 -2.238 8.033 9.629 Atomic orbital electron populations 1.20264 0.83931 1.03473 1.04007 1.22803 0.95215 0.84472 1.06110 1.21500 0.92847 0.99340 1.11002 1.21428 0.98357 0.93957 1.13510 1.21950 0.83471 0.94164 1.01564 1.18882 0.91562 0.92863 0.84379 0.86778 1.20812 0.99662 0.96640 0.99434 1.20996 0.98046 0.96058 0.98647 1.21455 0.98368 0.99800 0.95423 1.22579 1.00962 0.96025 0.97462 1.20823 0.85971 0.91970 1.01417 1.48252 1.23594 1.58921 1.06352 1.18624 0.82873 0.78538 0.85761 1.90582 1.24950 1.48624 1.82114 1.21448 1.04363 1.43229 0.90876 0.89688 1.26807 0.93730 0.92443 1.05202 1.70201 1.07430 1.32525 1.34513 0.85169 0.79703 0.78456 0.76239 1.17027 1.19785 1.19721 1.83906 1.17013 1.35538 1.70642 0.91712 0.87233 0.90297 0.82895 0.83779 0.90865 0.94979 0.89410 0.89279 0.90800 0.96046 0.88272 0.94306 0.92527 0.90219 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.02 10.42 71.24 0.74 -1.28 16 2 C -0.04 -1.56 7.11 24.83 0.18 -1.39 16 3 C -0.23 -9.66 10.81 22.19 0.24 -9.42 16 4 C -0.25 -11.07 10.78 22.19 0.24 -10.83 16 5 C 0.04 1.82 3.70 24.83 0.09 1.91 16 6 C 0.22 8.70 2.96 41.45 0.12 8.83 16 7 H 0.11 3.65 8.13 -2.39 -0.02 3.63 16 8 C -0.13 -4.25 4.33 28.36 0.12 -4.12 16 9 C -0.10 -2.52 5.76 29.51 0.17 -2.35 16 10 C -0.11 -3.31 5.65 30.30 0.17 -3.14 16 11 C -0.13 -3.96 6.40 31.70 0.20 -3.76 16 12 C 0.12 4.29 4.66 87.42 0.41 4.70 16 13 N -0.63 -28.08 2.58 -814.08 -2.10 -30.18 16 14 C 0.54 30.61 7.50 86.36 0.65 31.26 16 15 O -0.58 -36.95 10.66 18.72 0.20 -36.75 16 16 C -0.56 -31.75 8.76 24.83 0.22 -31.53 16 17 H 0.09 4.38 5.99 -2.91 -0.02 4.36 16 18 C 0.03 1.86 5.50 85.30 0.47 2.33 16 19 N -0.82 -50.28 11.83 21.84 0.26 -50.03 16 20 Si 0.98 41.94 29.56 68.60 2.03 43.97 16 21 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 24 O -0.17 -8.73 8.51 20.48 0.17 -8.56 16 25 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 27 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.15 5.47 8.06 -2.91 -0.02 5.45 16 29 H 0.14 5.59 8.06 -2.91 -0.02 5.57 16 30 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.03 1.33 6.65 -2.39 -0.02 1.31 16 32 H 0.09 1.90 6.28 -2.39 -0.01 1.89 16 33 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.02 0.80 6.82 -2.39 -0.02 0.78 16 36 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.06 2.16 5.97 -2.39 -0.01 2.14 16 39 H 0.08 2.19 6.89 -2.38 -0.02 2.17 16 40 H 0.27 15.18 8.29 -92.71 -0.77 14.42 16 Total: -1.00 -77.86 315.04 5.62 -72.25 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 1.03 Total: 28.10 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 4.02 Total: -18.80 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -1.84 Total: -80.20 kcal Atomic # 8 Polarization: -45.68 SS G_CDS: 0.37 Total: -45.31 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -77.86 5.62 -72.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153867396.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.150 kcal (2) G-P(sol) polarization free energy of solvation -77.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds