Wall clock time and date at job start Mon Mar 30 2020 01:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37722 * 119.95422 * 2 1 4 4 C 1.39716 * 119.91021 * 179.97438 * 3 2 1 5 5 C 1.47597 * 120.08858 * 179.97438 * 4 3 2 6 6 O 1.21588 * 120.00162 * 44.61505 * 5 4 3 7 7 N 1.34780 * 120.00196 * 224.61298 * 5 4 3 8 8 C 1.46502 * 119.99914 * 185.73051 * 7 5 4 9 9 C 1.50695 * 109.47047 * 90.00220 * 8 7 5 10 10 H 1.07995 * 120.00104 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99896 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00287 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99889 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47428 * 59.99988 * 13 11 9 15 15 H 1.48508 * 109.46912 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47173 * 299.99878 * 13 11 9 17 17 C 1.46497 * 119.99744 * 5.73503 * 7 5 4 18 18 C 1.53006 * 109.47305 * 125.17103 * 17 7 5 19 19 C 1.53008 * 109.46650 * 245.16842 * 17 7 5 20 20 C 1.39757 * 119.82108 * 359.73283 * 4 3 2 21 21 C 1.37675 * 119.91510 * 0.54404 * 20 4 3 22 22 C 1.38969 * 119.95524 * 179.97438 * 2 1 3 23 23 O 1.35707 * 119.91597 * 359.97438 * 22 2 1 24 24 H 1.09014 * 109.46820 * 270.01880 * 1 2 3 25 25 H 1.08992 * 109.47421 * 30.01905 * 1 2 3 26 26 H 1.09000 * 109.47214 * 150.02333 * 1 2 3 27 27 H 1.07999 * 120.04770 * 359.96180 * 3 2 1 28 28 H 1.09006 * 109.47048 * 210.00191 * 8 7 5 29 29 H 1.09003 * 109.47015 * 329.99853 * 8 7 5 30 30 H 0.96997 * 120.00257 * 180.02562 * 12 11 9 31 31 H 1.08996 * 109.47154 * 5.16207 * 17 7 5 32 32 H 1.09001 * 109.47060 * 59.99316 * 18 17 7 33 33 H 1.08995 * 109.46910 * 179.97438 * 18 17 7 34 34 H 1.08999 * 109.46619 * 299.99492 * 18 17 7 35 35 H 1.08994 * 109.46911 * 60.00192 * 19 17 7 36 36 H 1.08995 * 109.46851 * 180.02562 * 19 17 7 37 37 H 1.08996 * 109.46824 * 299.99568 * 19 17 7 38 38 H 1.08008 * 120.04324 * 180.29278 * 20 4 3 39 39 H 1.07996 * 119.96095 * 179.73125 * 21 20 4 40 40 H 0.96703 * 114.00413 * 270.02122 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1933 0.0000 4 6 3.5918 1.1922 0.0005 5 6 4.3328 2.4687 0.0000 6 8 3.9894 3.3713 0.7388 7 7 5.3900 2.6339 -0.8195 8 6 6.2015 3.8505 -0.7320 9 6 7.3201 3.6382 0.2553 10 1 7.4166 2.6920 0.7667 11 6 8.2203 4.6521 0.5056 12 7 8.1025 5.8046 -0.1168 13 14 9.6073 4.3887 1.7288 14 1 10.4572 3.2577 1.2777 15 1 10.4298 5.6220 1.8176 16 1 9.0372 4.0774 3.0642 17 6 5.7276 1.5969 -1.7977 18 6 5.7898 2.2155 -3.1958 19 6 7.0875 0.9893 -1.4479 20 6 4.2859 -0.0208 0.0067 21 6 3.5912 -1.2094 0.0009 22 6 2.2009 -1.2040 0.0005 23 8 1.5197 -2.3778 0.0016 24 1 -0.3633 0.0003 1.0278 25 1 -0.3634 0.8897 -0.5141 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6547 2.1286 -0.0006 28 1 6.6204 4.0791 -1.7120 29 1 5.5773 4.6806 -0.4010 30 1 8.7360 6.5178 0.0590 31 1 4.9657 0.8177 -1.7786 32 1 6.5516 2.9948 -3.2147 33 1 6.0414 1.4440 -3.9235 34 1 4.8209 2.6484 -3.4449 35 1 7.0432 0.5486 -0.4520 36 1 7.3389 0.2181 -2.1759 37 1 7.8493 1.7685 -1.4669 38 1 5.3659 -0.0258 0.0120 39 1 4.1268 -2.1472 0.0013 40 1 1.3223 -2.7173 0.8853 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227024299.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:35 Heat of formation + Delta-G solvation = -79.428514 kcal Electronic energy + Delta-G solvation = -21966.907075 eV Core-core repulsion = 18745.844454 eV Total energy + Delta-G solvation = -3221.062620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.58388 -40.17431 -37.68225 -37.43523 -34.96309 -33.75547 -32.49511 -31.42054 -29.30331 -28.29786 -27.56217 -25.49256 -23.90014 -23.15901 -22.26255 -19.94020 -19.36488 -18.61014 -18.26548 -17.27461 -16.85582 -16.58016 -16.34782 -15.69926 -15.33042 -15.09411 -14.83958 -14.38882 -14.31168 -14.12779 -13.80480 -13.69373 -13.40183 -13.31271 -12.94782 -12.93842 -12.84705 -12.77269 -12.61679 -12.47637 -12.26882 -12.09125 -11.70780 -11.54335 -11.36662 -10.77517 -10.60634 -9.91175 -9.57618 -9.39540 -8.19734 -6.32325 -0.13704 0.28552 1.36662 1.40791 1.47672 1.77582 2.23318 2.41719 2.60872 3.10058 3.24961 3.55517 3.80815 3.88571 3.96245 4.17472 4.26333 4.35280 4.40189 4.59277 4.73608 4.79911 4.83123 4.83447 4.89697 4.97199 5.01015 5.09146 5.14059 5.23796 5.25239 5.35536 5.39613 5.43538 5.56168 5.62621 5.75296 5.86261 6.09218 6.69150 6.76705 6.85302 7.25461 7.41671 8.87787 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024192 B = 0.004781 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.144554 B = 5855.302278 C = 5951.340473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.118 4.118 3 C -0.070 4.070 4 C -0.143 4.143 5 C 0.539 3.461 6 O -0.598 6.598 7 N -0.586 5.586 8 C 0.261 3.739 9 C -0.529 4.529 10 H 0.057 0.943 11 C 0.008 3.992 12 N -0.930 5.930 13 Si 0.963 3.037 14 H -0.258 1.258 15 H -0.281 1.281 16 H -0.279 1.279 17 C 0.119 3.881 18 C -0.157 4.157 19 C -0.155 4.155 20 C -0.083 4.083 21 C -0.138 4.138 22 C 0.130 3.870 23 O -0.495 6.495 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.121 0.879 28 H 0.031 0.969 29 H -0.008 1.008 30 H 0.266 0.734 31 H 0.108 0.892 32 H 0.044 0.956 33 H 0.098 0.902 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.049 0.951 38 H 0.138 0.862 39 H 0.163 0.837 40 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.569 -18.937 -3.091 21.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.119 4.119 3 C -0.089 4.089 4 C -0.146 4.146 5 C 0.328 3.672 6 O -0.480 6.480 7 N -0.316 5.316 8 C 0.140 3.860 9 C -0.568 4.568 10 H 0.075 0.925 11 C -0.191 4.191 12 N -0.570 5.570 13 Si 0.788 3.212 14 H -0.183 1.183 15 H -0.206 1.206 16 H -0.205 1.205 17 C 0.016 3.984 18 C -0.215 4.215 19 C -0.213 4.213 20 C -0.101 4.101 21 C -0.156 4.156 22 C 0.085 3.915 23 O -0.309 6.309 24 H 0.102 0.898 25 H 0.088 0.912 26 H 0.103 0.897 27 H 0.139 0.861 28 H 0.049 0.951 29 H 0.011 0.989 30 H 0.074 0.926 31 H 0.125 0.875 32 H 0.063 0.937 33 H 0.117 0.883 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.111 0.889 37 H 0.068 0.932 38 H 0.156 0.844 39 H 0.180 0.820 40 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -10.604 -18.240 -3.371 21.366 hybrid contribution 0.899 0.921 1.233 1.782 sum -9.705 -17.318 -2.138 19.967 Atomic orbital electron populations 1.20731 0.88338 1.03857 1.03479 1.20354 0.98306 0.91478 1.01770 1.20980 0.91851 0.98607 0.97475 1.19924 0.94767 0.92708 1.07197 1.18956 0.80452 0.87708 0.80079 1.90710 1.69155 1.44960 1.43203 1.48280 1.27362 1.21037 1.34881 1.18765 0.88785 0.81906 0.96565 1.21609 1.11325 0.99587 1.24286 0.92512 1.25814 1.00656 0.94582 0.98035 1.70050 1.38249 1.04708 1.43956 0.85538 0.78748 0.78029 0.78935 1.18274 1.20597 1.20504 1.21595 0.98775 0.89812 0.88179 1.22117 1.01604 1.01953 0.95782 1.22177 0.96367 1.01120 1.01633 1.21426 1.00918 0.90617 0.97186 1.21544 0.93515 0.98770 1.01821 1.18453 0.89745 0.85207 0.98127 1.84669 1.75765 1.34931 1.35521 0.89831 0.91221 0.89696 0.86063 0.95119 0.98940 0.92551 0.87457 0.93673 0.88310 0.93145 0.93008 0.88853 0.93176 0.84400 0.81986 0.72627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 9.78 71.24 0.70 -1.08 16 2 C -0.12 -2.70 5.89 -19.81 -0.12 -2.82 16 3 C -0.07 -2.11 9.32 22.51 0.21 -1.90 16 4 C -0.14 -4.94 4.95 -20.08 -0.10 -5.04 16 5 C 0.54 24.77 7.23 86.71 0.63 25.40 16 6 O -0.60 -33.50 16.53 -3.99 -0.07 -33.57 16 7 N -0.59 -26.24 2.39 -805.77 -1.92 -28.17 16 8 C 0.26 14.35 4.77 85.63 0.41 14.76 16 9 C -0.53 -30.36 7.85 25.60 0.20 -30.16 16 10 H 0.06 3.19 7.59 -2.91 -0.02 3.17 16 11 C 0.01 0.45 5.46 84.66 0.46 0.91 16 12 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 13 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 14 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 16 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 17 C 0.12 3.96 2.40 45.00 0.11 4.07 16 18 C -0.16 -4.77 9.07 71.98 0.65 -4.12 16 19 C -0.16 -4.85 8.22 71.98 0.59 -4.26 16 20 C -0.08 -2.28 7.39 22.50 0.17 -2.11 16 21 C -0.14 -2.87 9.97 22.33 0.22 -2.65 16 22 C 0.13 2.61 6.68 22.63 0.15 2.76 16 23 O -0.50 -7.18 12.52 -90.27 -1.13 -8.31 16 24 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.07 1.14 8.08 -2.39 -0.02 1.13 16 26 H 0.08 1.21 7.52 -2.39 -0.02 1.19 16 27 H 0.12 3.82 8.06 -2.91 -0.02 3.79 16 28 H 0.03 1.71 6.17 -2.38 -0.01 1.70 16 29 H -0.01 -0.48 7.35 -2.39 -0.02 -0.50 16 30 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.11 3.09 4.78 -2.39 -0.01 3.08 16 32 H 0.04 1.60 6.52 -2.39 -0.02 1.58 16 33 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 35 H 0.05 1.61 6.53 -2.39 -0.02 1.60 16 36 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.05 1.92 6.93 -2.39 -0.02 1.90 16 38 H 0.14 3.77 5.09 -2.91 -0.01 3.75 16 39 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 40 H 0.41 2.05 9.06 -74.06 -0.67 1.38 16 Total: -1.00 -76.94 327.18 3.86 -73.08 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.39 Total: 12.57 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 4.28 Total: -6.24 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -1.64 Total: -84.58 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -1.20 Total: -41.88 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -76.94 3.86 -73.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227024299.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.348 kcal (2) G-P(sol) polarization free energy of solvation -76.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds