Wall clock time and date at job start Mon Mar 30 2020 01:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38270 * 119.97188 * 2 1 4 4 C 1.38261 * 120.11247 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.97421 * 180.02562 * 4 3 2 6 6 C 1.38150 * 120.05856 * 359.97438 * 4 3 2 7 7 C 1.38736 * 119.94169 * 359.97438 * 6 4 3 8 8 O 1.35897 * 120.05555 * 180.02562 * 7 6 4 9 9 C 1.42903 * 116.99665 * 180.02562 * 8 7 6 10 10 C 1.50709 * 109.46631 * 179.97438 * 9 8 7 11 11 O 1.21279 * 120.00080 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99692 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00015 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.46733 * 325.00143 * 13 12 10 15 15 C 1.53000 * 109.47145 * 84.99707 * 13 12 10 16 16 C 1.50694 * 109.47115 * 204.99781 * 13 12 10 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 12 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.38148 * 119.97298 * 180.23743 * 2 1 3 25 25 H 1.08996 * 109.46990 * 90.00041 * 1 2 3 26 26 H 1.09001 * 109.46562 * 209.99918 * 1 2 3 27 27 H 1.08995 * 109.46715 * 329.99442 * 1 2 3 28 28 H 1.07999 * 119.94327 * 359.97438 * 3 2 1 29 29 H 1.09006 * 109.46921 * 269.97941 * 5 4 3 30 30 H 1.08993 * 109.47237 * 29.97596 * 5 4 3 31 31 H 1.09004 * 109.47479 * 149.98152 * 5 4 3 32 32 H 1.07994 * 120.02992 * 179.97438 * 6 4 3 33 33 H 1.09003 * 109.47496 * 60.00252 * 9 8 7 34 34 H 1.08992 * 109.47046 * 299.99608 * 9 8 7 35 35 H 0.97005 * 120.00104 * 359.97438 * 12 10 9 36 36 H 1.08997 * 109.47359 * 180.02562 * 15 13 12 37 37 H 1.09007 * 109.47356 * 300.00099 * 15 13 12 38 38 H 1.09000 * 109.47156 * 59.99824 * 15 13 12 39 39 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 40 40 H 1.07994 * 120.02934 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1978 0.0000 4 6 3.5804 1.2012 0.0005 5 6 4.3301 2.5085 0.0011 6 6 4.2753 0.0072 0.0016 7 6 3.5846 -1.1960 0.0027 8 8 4.2658 -2.3719 0.0043 9 6 3.4892 -3.5715 0.0047 10 6 4.4091 -4.7653 0.0059 11 8 5.6112 -4.6046 0.0067 12 7 3.8958 -6.0115 0.0060 13 6 4.7898 -7.1720 0.0076 14 1 5.6791 -6.9463 -0.5809 15 6 5.1991 -7.4984 1.4453 16 6 4.0771 -8.3561 -0.5929 17 1 3.0597 -8.2546 -0.9407 18 6 4.7235 -9.5695 -0.6975 19 7 5.9623 -9.6933 -0.2735 20 14 3.8397 -11.0375 -1.4413 21 1 3.1354 -11.7864 -0.3697 22 1 2.8530 -10.5647 -2.4454 23 1 4.8282 -11.9285 -2.1002 24 6 2.1972 -1.1967 -0.0050 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3632 0.8899 0.5139 28 1 1.6564 2.1323 -0.0004 29 1 4.5116 2.8237 -1.0265 30 1 3.7385 3.2664 0.5145 31 1 5.2826 2.3809 0.5156 32 1 5.3552 0.0104 0.0016 33 1 2.8611 -3.5981 -0.8857 34 1 2.8598 -3.5965 0.8942 35 1 2.9343 -6.1400 0.0057 36 1 5.8647 -8.3616 1.4466 37 1 5.7147 -6.6419 1.8798 38 1 4.3098 -7.7240 2.0339 39 1 6.4169 -10.5471 -0.3468 40 1 1.6573 -2.1320 -0.0093 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259992636.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:43 Heat of formation + Delta-G solvation = -65.836096 kcal Electronic energy + Delta-G solvation = -20610.004560 eV Core-core repulsion = 17389.531351 eV Total energy + Delta-G solvation = -3220.473209 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.36931 -38.92743 -37.50425 -34.80596 -33.71747 -32.46704 -31.21596 -29.62567 -27.76240 -27.36917 -26.51143 -25.27948 -22.07464 -21.45675 -20.62831 -19.51030 -17.69951 -17.36504 -16.15509 -16.12725 -16.06581 -15.35749 -15.16061 -14.32088 -14.25822 -13.91801 -13.63051 -13.42428 -13.30989 -13.14297 -12.76279 -12.58725 -12.41212 -11.99859 -11.94895 -11.66659 -11.57447 -11.14769 -10.98938 -10.96785 -10.81142 -10.69198 -10.35565 -10.26705 -9.10838 -9.07765 -8.75386 -8.59430 -8.20522 -7.99938 -6.15495 -4.25331 1.19124 1.36156 2.92338 3.21896 3.23744 3.29604 3.31789 3.60867 4.16701 4.36304 4.55898 4.63858 4.89306 5.05223 5.08662 5.15961 5.16470 5.19758 5.22277 5.35661 5.36337 5.42343 5.43865 5.56612 5.65590 5.75745 6.01554 6.23902 6.37724 6.48577 6.68992 6.78952 6.92659 7.10536 7.34938 7.39162 7.53040 7.65191 7.87045 8.10791 8.56137 8.72935 9.01859 9.42002 10.90539 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032760 B = 0.003065 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.508375 B = 9134.595519 C = 9724.698716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.045 4.045 3 C -0.165 4.165 4 C -0.046 4.046 5 C -0.114 4.114 6 C -0.158 4.158 7 C 0.143 3.857 8 O -0.286 6.286 9 C 0.040 3.960 10 C 0.503 3.497 11 O -0.532 6.532 12 N -0.705 5.705 13 C 0.266 3.734 14 H 0.050 0.950 15 C -0.148 4.148 16 C -0.535 4.535 17 H 0.062 0.938 18 C 0.066 3.934 19 N -0.883 5.883 20 Si 0.903 3.097 21 H -0.279 1.279 22 H -0.274 1.274 23 H -0.285 1.285 24 C -0.219 4.219 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.120 0.880 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.131 0.869 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.390 0.610 36 H 0.091 0.909 37 H 0.015 0.985 38 H 0.027 0.973 39 H 0.265 0.735 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.438 19.741 1.136 22.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.045 4.045 3 C -0.183 4.183 4 C -0.046 4.046 5 C -0.170 4.170 6 C -0.177 4.177 7 C 0.097 3.903 8 O -0.198 6.198 9 C -0.039 4.039 10 C 0.286 3.714 11 O -0.409 6.409 12 N -0.355 5.355 13 C 0.165 3.835 14 H 0.068 0.932 15 C -0.207 4.207 16 C -0.574 4.574 17 H 0.080 0.920 18 C -0.137 4.137 19 N -0.520 5.520 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.198 1.198 23 H -0.210 1.210 24 C -0.238 4.238 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.138 0.862 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.149 0.851 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.222 0.778 36 H 0.110 0.890 37 H 0.034 0.966 38 H 0.046 0.954 39 H 0.075 0.925 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.173 19.644 1.150 21.711 hybrid contribution -1.193 -1.070 -0.362 1.643 sum -10.367 18.574 0.788 21.286 Atomic orbital electron populations 1.20812 0.91062 1.02844 1.02463 1.19663 0.95887 0.92449 0.96482 1.20755 0.93389 0.97398 1.06775 1.19657 0.93600 0.94511 0.96811 1.20799 1.00054 0.93658 1.02520 1.20299 1.00469 0.89164 1.07774 1.19083 0.90479 0.86117 0.94642 1.86202 1.34320 1.11367 1.87897 1.22652 0.94396 0.83733 1.03144 1.19861 0.88962 0.84126 0.78480 1.90706 1.15116 1.85715 1.49316 1.46427 1.10864 1.05541 1.72629 1.18793 0.89926 0.80644 0.94149 0.93200 1.22096 1.00235 1.01100 0.97269 1.21198 1.00109 0.94444 1.41639 0.91985 1.24899 0.94896 0.98792 0.95139 1.69904 1.10874 1.25474 1.45728 0.86422 0.79280 0.81992 0.79244 1.20518 1.19837 1.21027 1.21146 0.92913 0.99026 1.10707 0.90965 0.91415 0.91438 0.86173 0.90924 0.91422 0.91251 0.85101 0.89486 0.89545 0.77795 0.89001 0.96561 0.95366 0.92490 0.85390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 10.01 36.01 0.36 -0.51 16 2 C -0.04 -0.47 5.88 -104.64 -0.62 -1.09 16 3 C -0.16 -1.68 9.35 -39.56 -0.37 -2.05 16 4 C -0.05 -0.49 5.88 -104.65 -0.62 -1.11 16 5 C -0.11 -0.88 10.01 36.01 0.36 -0.52 16 6 C -0.16 -2.08 9.64 -39.43 -0.38 -2.46 16 7 C 0.14 2.05 6.69 -39.21 -0.26 1.79 16 8 O -0.29 -4.88 9.67 -39.33 -0.38 -5.26 16 9 C 0.04 0.60 5.22 36.01 0.19 0.79 16 10 C 0.50 10.25 7.87 -10.98 -0.09 10.16 16 11 O -0.53 -13.41 16.16 -14.35 -0.23 -13.64 16 12 N -0.70 -14.46 5.07 -54.93 -0.28 -14.74 16 13 C 0.27 6.76 2.56 -69.09 -0.18 6.58 16 14 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 15 C -0.15 -3.70 9.26 37.16 0.34 -3.35 16 16 C -0.54 -14.05 8.73 -34.44 -0.30 -14.35 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 19 N -0.88 -24.80 11.32 55.43 0.63 -24.18 16 20 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 24 C -0.22 -2.65 8.69 -39.43 -0.34 -2.99 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 27 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 28 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 32 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.09 1.09 7.65 -51.93 -0.40 0.69 16 34 H 0.09 1.06 7.67 -51.93 -0.40 0.66 16 35 H 0.39 6.63 8.54 -40.82 -0.35 6.28 16 36 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.13 1.33 6.30 -52.49 -0.33 1.00 16 LS Contribution 339.05 15.07 5.11 5.11 Total: -1.00 -32.21 339.05 -8.11 -40.31 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -5.94 Total: 4.41 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -1.99 Total: -7.44 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.35 Total: -38.92 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.61 Total: -18.90 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.21 -8.11 -40.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259992636.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.525 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds