Wall clock time and date at job start Mon Mar 30 2020 01:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34178 * 125.43280 * 2 1 4 4 C 1.47026 * 105.94923 * 180.02562 * 3 2 1 5 5 C 1.47381 * 127.18878 * 180.02562 * 4 3 2 6 6 O 1.21614 * 119.99795 * 170.77794 * 5 4 3 7 7 N 1.34779 * 120.00185 * 350.76752 * 5 4 3 8 8 C 1.46503 * 119.99721 * 1.32924 * 7 5 4 9 9 C 1.50699 * 109.46978 * 82.90785 * 8 7 5 10 10 H 1.08000 * 120.00234 * 359.97438 * 9 8 7 11 11 C 1.37873 * 119.99957 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00467 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 120.00083 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47005 * 89.99934 * 13 11 9 15 15 H 1.48500 * 109.47222 * 209.99727 * 13 11 9 16 16 H 1.48499 * 109.47088 * 329.99655 * 13 11 9 17 17 C 1.46494 * 120.00013 * 181.32865 * 7 5 4 18 18 C 1.53001 * 109.47331 * 94.95921 * 17 7 5 19 19 C 1.53001 * 117.49734 * 247.69923 * 18 17 7 20 20 C 1.52999 * 117.50262 * 179.03761 * 18 17 7 21 21 C 1.36409 * 105.61776 * 359.97438 * 4 3 2 22 22 C 1.50697 * 125.80388 * 180.02562 * 21 4 3 23 23 O 1.33655 * 108.39862 * 359.74233 * 21 4 3 24 24 H 1.09002 * 109.47146 * 90.00302 * 1 2 3 25 25 H 1.08993 * 109.46886 * 329.99876 * 1 2 3 26 26 H 1.08997 * 109.46379 * 209.99962 * 1 2 3 27 27 H 1.07996 * 127.02867 * 359.96185 * 3 2 1 28 28 H 1.09004 * 109.46837 * 202.90198 * 8 7 5 29 29 H 1.08998 * 109.47327 * 322.90992 * 8 7 5 30 30 H 0.96999 * 120.00522 * 180.02562 * 12 11 9 31 31 H 1.09002 * 109.47219 * 214.95852 * 17 7 5 32 32 H 1.09004 * 109.47357 * 334.95687 * 17 7 5 33 33 H 1.09000 * 115.54804 * 33.36635 * 18 17 7 34 34 H 1.08999 * 117.50122 * 359.97438 * 19 18 17 35 35 H 1.09002 * 117.49918 * 145.01588 * 19 18 17 36 36 H 1.08994 * 117.49788 * 214.97849 * 20 18 17 37 37 H 1.09006 * 117.49633 * 0.02562 * 20 18 17 38 38 H 1.09004 * 109.46904 * 90.00236 * 22 21 4 39 39 H 1.08999 * 109.47876 * 210.00538 * 22 21 4 40 40 H 1.08998 * 109.47054 * 330.00565 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2850 1.0933 0.0000 4 6 3.6710 0.6029 -0.0006 5 6 4.9024 1.4126 -0.0003 6 8 5.9817 0.8780 0.1678 7 7 4.8325 2.7456 -0.1867 8 6 3.5301 3.3936 -0.3604 9 6 2.9126 3.6503 0.9901 10 1 3.4376 3.3595 1.8880 11 6 1.6770 4.2555 1.0793 12 7 1.0375 4.6092 -0.0140 13 14 0.9113 4.5731 2.7534 14 1 1.3265 5.9127 3.2415 15 1 -0.5685 4.5251 2.6380 16 1 1.3670 3.5339 3.7113 17 6 6.0588 3.5465 -0.2155 18 6 6.5112 3.7347 -1.6649 19 6 7.8101 3.0494 -2.0941 20 6 7.7706 4.5685 -1.9094 21 6 3.5791 -0.7581 -0.0004 22 6 4.7390 -1.7201 -0.0003 23 8 2.2853 -1.0935 0.0061 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 0.8899 0.5138 26 1 -0.3632 -0.8900 0.5138 27 1 1.9595 2.1230 -0.0006 28 1 3.6622 4.3398 -0.8853 29 1 2.8757 2.7439 -0.9416 30 1 0.1683 5.0353 0.0488 31 1 5.8673 4.5206 0.2347 32 1 6.8406 3.0344 0.3456 33 1 5.7111 3.8036 -2.4019 34 1 8.3425 2.4649 -1.3438 35 1 7.8647 2.6677 -3.1137 36 1 7.7991 5.1855 -2.8074 37 1 8.2771 4.9826 -1.0375 38 1 5.0187 -1.9518 1.0275 39 1 4.4507 -2.6372 -0.5139 40 1 5.5868 -1.2670 -0.5141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264020227.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:58 Heat of formation + Delta-G solvation = -3.438686 kcal Electronic energy + Delta-G solvation = -22285.864064 eV Core-core repulsion = 19068.096610 eV Total energy + Delta-G solvation = -3217.767454 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.43213 -40.60102 -38.20644 -36.73679 -34.51498 -33.81487 -33.72354 -30.48953 -29.60911 -28.12581 -25.81578 -24.91740 -23.59599 -23.16958 -22.21754 -21.20375 -19.28752 -18.57879 -17.93067 -17.31494 -17.26815 -16.86230 -16.30632 -16.06060 -15.65620 -14.93613 -14.81737 -14.42452 -14.31938 -14.20837 -14.05059 -13.91344 -13.49801 -13.43340 -13.27691 -12.94648 -12.77540 -12.57909 -12.37352 -12.34918 -12.16822 -11.78853 -11.72515 -11.32118 -10.90106 -10.78413 -10.68876 -10.40046 -9.53495 -9.12598 -8.20824 -6.33027 0.45879 1.27544 1.38912 1.42101 1.51067 1.89116 2.27383 2.39189 2.50957 2.95526 3.07770 3.69772 3.82448 3.87464 4.01460 4.06367 4.16231 4.38371 4.42407 4.55279 4.65675 4.68580 4.73037 4.74332 4.75943 4.80870 4.87920 4.93616 5.00568 5.02735 5.17414 5.26563 5.27981 5.28632 5.35983 5.65962 5.79419 5.85951 6.05652 6.24598 6.52844 6.80171 7.28970 7.40214 8.83189 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011667 B = 0.008594 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.358429 B = 3257.338400 C = 5068.347926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.052 4.052 3 C -0.195 4.195 4 C -0.263 4.263 5 C 0.584 3.416 6 O -0.587 6.587 7 N -0.591 5.591 8 C 0.237 3.763 9 C -0.535 4.535 10 H 0.043 0.957 11 C 0.033 3.967 12 N -0.909 5.909 13 Si 0.944 3.056 14 H -0.276 1.276 15 H -0.271 1.271 16 H -0.279 1.279 17 C 0.149 3.851 18 C -0.186 4.186 19 C -0.171 4.171 20 C -0.152 4.152 21 C 0.054 3.946 22 C -0.065 4.065 23 O -0.179 6.179 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.197 0.803 28 H 0.020 0.980 29 H 0.044 0.956 30 H 0.271 0.729 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.568 -6.285 -2.721 7.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.099 4.099 3 C -0.214 4.214 4 C -0.267 4.267 5 C 0.375 3.625 6 O -0.472 6.472 7 N -0.319 5.319 8 C 0.117 3.883 9 C -0.574 4.574 10 H 0.061 0.939 11 C -0.168 4.168 12 N -0.548 5.548 13 Si 0.770 3.230 14 H -0.201 1.201 15 H -0.196 1.196 16 H -0.204 1.204 17 C 0.026 3.974 18 C -0.206 4.206 19 C -0.208 4.208 20 C -0.189 4.189 21 C 0.000 4.000 22 C -0.121 4.121 23 O -0.077 6.077 24 H 0.111 0.889 25 H 0.101 0.899 26 H 0.112 0.888 27 H 0.213 0.787 28 H 0.038 0.962 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.121 0.879 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.807 -6.703 -2.706 8.170 hybrid contribution -0.565 0.821 0.877 1.327 sum 3.242 -5.883 -1.829 6.962 Atomic orbital electron populations 1.20335 0.82489 1.04456 1.04438 1.22906 0.95346 0.83114 1.08573 1.24502 0.90867 1.02727 1.03262 1.21343 0.94591 0.93978 1.16789 1.17421 0.87194 0.82177 0.75707 1.90588 1.30082 1.72411 1.54070 1.47940 1.08827 1.06135 1.69000 1.19698 0.79425 0.92894 0.96316 1.21450 1.03535 1.39714 0.92679 0.93894 1.25448 0.96963 0.94752 0.99652 1.69989 1.15400 1.40866 1.28531 0.85760 0.78240 0.78460 0.80563 1.20148 1.19566 1.20382 1.20947 0.86293 0.95117 0.95005 1.22602 0.92555 1.08113 0.97307 1.23005 0.99535 0.95747 1.02523 1.23026 0.98470 0.93330 1.04098 1.23180 0.83856 0.93977 0.98949 1.20514 0.90364 0.96429 1.04747 1.83594 1.15883 1.35936 1.72239 0.88910 0.89862 0.88770 0.78675 0.96160 0.93814 0.91919 0.90640 0.90840 0.89266 0.89222 0.88308 0.87118 0.87693 0.88806 0.87939 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.74 10.40 71.24 0.74 -1.00 16 2 C -0.05 -1.99 7.28 24.76 0.18 -1.81 16 3 C -0.20 -8.84 8.12 23.65 0.19 -8.65 16 4 C -0.26 -11.79 6.08 -18.99 -0.12 -11.91 16 5 C 0.58 27.23 7.59 86.65 0.66 27.89 16 6 O -0.59 -27.39 14.49 -4.07 -0.06 -27.45 16 7 N -0.59 -26.96 2.48 -830.08 -2.06 -29.02 16 8 C 0.24 11.78 4.71 85.63 0.40 12.18 16 9 C -0.54 -28.10 7.14 25.60 0.18 -27.91 16 10 H 0.04 2.38 7.81 -2.91 -0.02 2.36 16 11 C 0.03 1.70 4.76 84.65 0.40 2.10 16 12 N -0.91 -47.74 13.21 21.45 0.28 -47.46 16 13 Si 0.94 41.24 29.54 68.60 2.03 43.27 16 14 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 15 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 17 C 0.15 5.82 5.72 86.38 0.49 6.31 16 18 C -0.19 -6.22 6.01 -10.79 -0.06 -6.28 16 19 C -0.17 -4.84 10.18 30.62 0.31 -4.53 16 20 C -0.15 -3.81 10.25 30.62 0.31 -3.50 16 21 C 0.05 2.04 7.37 25.26 0.19 2.23 16 22 C -0.06 -1.87 9.81 71.23 0.70 -1.17 16 23 O -0.18 -6.61 10.52 4.44 0.05 -6.56 16 24 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.20 9.80 3.13 -2.91 -0.01 9.79 16 28 H 0.02 1.05 8.02 -2.39 -0.02 1.03 16 29 H 0.04 2.30 4.73 -2.39 -0.01 2.29 16 30 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 31 H 0.08 2.91 8.11 -2.39 -0.02 2.89 16 32 H 0.07 2.87 7.01 -2.38 -0.02 2.86 16 33 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 34 H 0.09 2.64 8.04 -2.39 -0.02 2.62 16 35 H 0.10 2.53 8.14 -2.39 -0.02 2.52 16 36 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 38 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.09 2.86 6.71 -2.39 -0.02 2.85 16 Total: -1.00 -61.19 332.14 5.87 -55.33 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 1.04 Total: 27.94 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 4.58 Total: -16.05 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -1.77 Total: -76.48 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -0.01 Total: -34.01 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -61.19 5.87 -55.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264020227.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.888 kcal (2) G-P(sol) polarization free energy of solvation -61.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds