Wall clock time and date at job start Mon Mar 30 2020 02:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.46778 * 2 1 4 4 O 1.33648 * 125.80209 * 270.00130 * 3 2 1 5 5 C 1.34217 * 110.90863 * 180.02562 * 4 3 2 6 6 C 1.34181 * 109.12284 * 359.70362 * 5 4 3 7 7 C 1.36421 * 125.79922 * 90.00086 * 3 2 1 8 8 C 1.47370 * 127.19381 * 0.02562 * 7 3 2 9 9 O 1.21611 * 120.00179 * 7.55764 * 8 7 3 10 10 N 1.34782 * 120.00206 * 187.56379 * 8 7 3 11 11 C 1.46490 * 120.00320 * 185.63626 * 10 8 7 12 12 C 1.50699 * 109.47335 * 270.27556 * 11 10 8 13 13 H 1.07998 * 120.00123 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00291 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99707 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00281 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47106 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46834 * 119.99897 * 16 14 12 19 19 H 1.48493 * 109.47417 * 240.00155 * 16 14 12 20 20 C 1.46504 * 119.99526 * 5.90972 * 10 8 7 21 21 C 1.53002 * 109.47065 * 271.71408 * 20 10 8 22 22 C 1.52994 * 117.49997 * 243.74905 * 21 20 10 23 23 C 1.53002 * 117.49689 * 175.08719 * 21 20 10 24 24 H 1.09004 * 109.46924 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47324 * 299.99836 * 1 2 3 26 26 H 1.08996 * 109.47809 * 60.00084 * 1 2 3 27 27 H 1.08994 * 109.47132 * 240.00019 * 2 1 3 28 28 H 1.09000 * 109.47277 * 119.99437 * 2 1 3 29 29 H 1.07996 * 125.43551 * 180.02562 * 5 4 3 30 30 H 1.08001 * 127.02199 * 180.27466 * 6 5 4 31 31 H 1.08999 * 109.47235 * 30.27426 * 11 10 8 32 32 H 1.09000 * 109.47570 * 150.27026 * 11 10 8 33 33 H 0.97002 * 119.99649 * 179.97438 * 15 14 12 34 34 H 1.09000 * 109.47021 * 31.71656 * 20 10 8 35 35 H 1.09000 * 109.47045 * 151.72022 * 20 10 8 36 36 H 1.08997 * 115.54971 * 29.42120 * 21 20 10 37 37 H 1.08997 * 117.50009 * 359.97438 * 22 21 20 38 38 H 1.09004 * 117.50100 * 145.02617 * 22 21 20 39 39 H 1.09001 * 117.49780 * 214.97870 * 23 21 20 40 40 H 1.08993 * 117.50167 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 2.2928 2.1580 -1.0839 5 6 2.7256 3.3808 -0.7390 6 6 2.7528 3.4761 0.5992 7 6 2.2982 2.1732 1.1065 8 6 2.1550 1.7667 2.5157 9 8 1.8941 0.6114 2.7918 10 7 2.3132 2.6752 3.4987 11 6 2.2937 2.2491 4.9001 12 6 0.8800 2.2965 5.4200 13 1 0.0765 2.6129 4.7715 14 6 0.6124 1.9361 6.7236 15 7 1.5909 1.5503 7.5133 16 14 -1.1398 1.9956 7.3683 17 1 -2.0487 2.4592 6.2893 18 1 -1.5503 0.6391 7.8119 19 1 -1.2134 2.9351 8.5159 20 6 2.4986 4.0898 3.1657 21 6 3.9879 4.3746 2.9611 22 6 4.6615 5.3452 3.9332 23 6 4.3809 5.7768 2.4916 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.0024 4.1646 -1.4284 30 1 3.0503 4.3339 1.1841 31 1 2.6745 1.2306 4.9755 32 1 2.9209 2.9161 5.4915 33 1 1.4026 1.2970 8.4306 34 1 1.9551 4.3216 2.2497 35 1 2.1190 4.7074 3.9796 36 1 4.5808 3.5366 2.5949 37 1 4.0436 5.7811 4.7183 38 1 5.6978 5.1459 4.2062 39 1 5.2328 5.8612 1.8168 40 1 3.5787 6.4964 2.3289 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280501352.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:07 Heat of formation + Delta-G solvation = -5.204166 kcal Electronic energy + Delta-G solvation = -22154.454866 eV Core-core repulsion = 18936.610855 eV Total energy + Delta-G solvation = -3217.844011 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.52913 -40.59088 -38.58106 -36.19102 -34.91587 -34.75584 -33.54465 -30.03708 -29.61001 -27.79028 -25.82971 -24.34568 -23.55660 -23.07752 -22.18998 -21.30578 -19.79789 -18.67005 -18.36689 -17.33717 -17.14524 -16.89332 -16.31450 -16.18530 -15.86885 -15.31877 -15.15337 -14.82712 -14.42195 -14.32558 -14.12989 -13.61365 -13.43180 -13.23487 -12.99796 -12.75003 -12.61750 -12.50566 -12.42699 -12.28305 -12.15947 -11.94959 -11.72602 -11.30744 -11.00758 -10.73917 -10.65982 -10.49897 -9.62880 -9.32915 -8.23657 -6.38541 0.42280 1.22749 1.34021 1.36596 1.48687 1.89896 2.26276 2.42291 2.46829 2.93473 3.05316 3.62009 3.65393 3.92351 3.95400 4.03638 4.11392 4.17497 4.30188 4.44326 4.46336 4.50865 4.64247 4.80239 4.82298 4.85455 4.92419 5.03111 5.05389 5.07260 5.13935 5.20881 5.27105 5.28575 5.32364 5.49213 5.56725 5.84211 6.04734 6.12954 6.68208 6.76729 7.25958 7.45299 8.83557 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013929 B = 0.006793 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.744784 B = 4120.831213 C = 5640.709104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.053 4.053 3 C 0.065 3.935 4 O -0.176 6.176 5 C -0.028 4.028 6 C -0.218 4.218 7 C -0.262 4.262 8 C 0.566 3.434 9 O -0.588 6.588 10 N -0.592 5.592 11 C 0.269 3.731 12 C -0.541 4.541 13 H 0.049 0.951 14 C 0.009 3.991 15 N -0.927 5.927 16 Si 0.967 3.033 17 H -0.269 1.269 18 H -0.279 1.279 19 H -0.267 1.267 20 C 0.129 3.871 21 C -0.187 4.187 22 C -0.186 4.186 23 C -0.142 4.142 24 H 0.083 0.917 25 H 0.028 0.972 26 H 0.072 0.928 27 H 0.109 0.891 28 H 0.086 0.914 29 H 0.257 0.743 30 H 0.194 0.806 31 H -0.004 1.004 32 H 0.023 0.977 33 H 0.268 0.732 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.119 0.881 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.641 8.628 -17.981 20.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.090 4.090 3 C 0.011 3.989 4 O -0.071 6.071 5 C -0.092 4.092 6 C -0.236 4.236 7 C -0.266 4.266 8 C 0.357 3.643 9 O -0.471 6.471 10 N -0.321 5.321 11 C 0.148 3.852 12 C -0.579 4.579 13 H 0.067 0.933 14 C -0.190 4.190 15 N -0.567 5.567 16 Si 0.791 3.209 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.192 1.192 20 C 0.007 3.993 21 C -0.207 4.207 22 C -0.223 4.223 23 C -0.179 4.179 24 H 0.102 0.898 25 H 0.047 0.953 26 H 0.091 0.909 27 H 0.128 0.872 28 H 0.104 0.896 29 H 0.273 0.727 30 H 0.211 0.789 31 H 0.014 0.986 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.121 0.879 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.114 0.886 39 H 0.137 0.863 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.516 7.908 -17.913 19.894 hybrid contribution -0.573 -0.291 1.409 1.548 sum 2.942 7.617 -16.505 18.414 Atomic orbital electron populations 1.21644 0.93022 1.03341 1.01424 1.20372 0.97319 0.86309 1.04968 1.22923 0.97804 0.94909 0.83245 1.83744 1.65297 1.24004 1.34102 1.24826 1.02087 0.85804 0.96525 1.24067 1.06124 0.97860 0.95536 1.21323 1.14589 0.98160 0.92547 1.17852 0.76575 0.84753 0.85130 1.90666 1.51124 1.20637 1.84644 1.47929 1.69419 1.08010 1.06717 1.18697 0.96007 0.93906 0.76621 1.21689 0.94053 1.45347 0.96833 0.93316 1.25840 1.01931 0.94324 0.96865 1.70063 1.33636 1.45552 1.07477 0.85376 0.79067 0.78065 0.78361 1.19370 1.20523 1.19165 1.21722 0.94672 0.80828 1.02111 1.22668 0.95793 0.94990 1.07227 1.23101 1.01645 1.03383 0.94178 1.23158 1.04126 0.94224 0.96392 0.89842 0.95259 0.90885 0.87249 0.89605 0.72720 0.78949 0.98638 0.95865 0.92348 0.87857 0.91142 0.89183 0.89263 0.88592 0.86320 0.86649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.89 71.98 0.71 -3.03 16 2 C -0.05 -1.54 6.02 29.85 0.18 -1.36 16 3 C 0.06 2.04 6.63 25.26 0.17 2.20 16 4 O -0.18 -4.42 10.52 4.48 0.05 -4.37 16 5 C -0.03 -0.54 12.03 66.89 0.80 0.26 16 6 C -0.22 -5.66 8.17 23.65 0.19 -5.47 16 7 C -0.26 -9.48 6.06 -18.99 -0.12 -9.59 16 8 C 0.57 26.68 7.64 86.65 0.66 27.34 16 9 O -0.59 -32.33 14.47 -4.06 -0.06 -32.39 16 10 N -0.59 -27.61 2.46 -830.11 -2.04 -29.65 16 11 C 0.27 15.29 5.10 85.63 0.44 15.73 16 12 C -0.54 -32.53 9.38 25.60 0.24 -32.29 16 13 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 14 C 0.01 0.55 5.46 84.65 0.46 1.01 16 15 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 16 Si 0.97 46.14 29.54 68.60 2.03 48.16 16 17 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 C 0.13 4.49 5.15 86.38 0.44 4.93 16 21 C -0.19 -5.25 3.92 -10.79 -0.04 -5.29 16 22 C -0.19 -4.65 10.18 30.62 0.31 -4.34 16 23 C -0.14 -2.57 9.33 30.62 0.29 -2.28 16 24 H 0.08 1.93 8.14 -2.38 -0.02 1.92 16 25 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.09 3.08 6.36 -2.39 -0.02 3.07 16 29 H 0.26 2.01 8.06 -2.91 -0.02 1.99 16 30 H 0.19 4.34 2.88 -2.91 -0.01 4.34 16 31 H 0.00 -0.29 7.51 -2.39 -0.02 -0.31 16 32 H 0.02 1.34 8.07 -2.39 -0.02 1.32 16 33 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.10 3.14 4.91 -2.39 -0.01 3.13 16 35 H 0.07 2.56 7.79 -2.39 -0.02 2.54 16 36 H 0.09 2.83 7.95 -2.39 -0.02 2.81 16 37 H 0.09 2.38 8.03 -2.39 -0.02 2.36 16 38 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 39 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -77.82 331.25 6.04 -71.77 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 1.04 Total: 15.69 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 4.74 Total: -12.17 kcal Atomic # 7 Polarization: -84.94 SS G_CDS: -1.76 Total: -86.69 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -0.01 Total: -36.76 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -77.82 6.04 -71.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280501352.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.570 kcal (2) G-P(sol) polarization free energy of solvation -77.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds