Wall clock time and date at job start Mon Mar 30 2020 02:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38274 * 119.94271 * 59.72515 * 4 2 1 6 6 C 1.38140 * 120.05195 * 179.72692 * 5 4 2 7 7 C 1.38729 * 119.94604 * 0.56641 * 6 5 4 8 8 O 1.35905 * 120.05703 * 179.68643 * 7 6 5 9 9 C 1.42902 * 116.99941 * 0.02562 * 8 7 6 10 10 C 1.53001 * 109.46925 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.46640 * 180.02562 * 10 9 8 12 12 O 1.21288 * 119.99910 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99488 * 179.97438 * 11 10 9 14 14 C 1.37102 * 119.99850 * 179.97438 * 13 11 10 15 15 H 1.07997 * 119.99628 * 0.02562 * 14 13 11 16 16 C 1.38948 * 120.00023 * 179.97438 * 14 13 11 17 17 N 1.31405 * 120.00007 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99932 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47169 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46901 * 120.00145 * 18 16 14 21 21 H 1.48497 * 109.47374 * 240.00343 * 18 16 14 22 22 C 1.38738 * 119.88842 * 359.70719 * 7 6 5 23 23 C 1.38139 * 119.94262 * 359.97438 * 22 7 6 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 29 29 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08000 * 119.96815 * 359.97438 * 5 4 2 32 32 H 1.08005 * 120.02747 * 180.24921 * 6 5 4 33 33 H 1.08994 * 109.47571 * 300.00718 * 9 8 7 34 34 H 1.09006 * 109.46748 * 60.00351 * 9 8 7 35 35 H 1.09002 * 109.47275 * 300.00336 * 10 9 8 36 36 H 1.08993 * 109.46955 * 60.00321 * 10 9 8 37 37 H 0.96999 * 119.99779 * 0.02562 * 13 11 10 38 38 H 0.97000 * 120.00065 * 179.97438 * 17 16 14 39 39 H 1.07997 * 120.02456 * 179.97438 * 22 7 6 40 40 H 1.07998 * 119.97261 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6929 -0.2402 -2.4857 6 6 2.1567 -0.8864 -3.6152 7 6 2.9540 -2.0146 -3.4893 8 8 3.4063 -2.6558 -4.5990 9 6 3.0225 -2.1126 -5.8638 10 6 3.6212 -2.9623 -6.9865 11 6 3.2168 -2.3891 -8.3204 12 8 2.5189 -1.3983 -8.3682 13 7 3.6317 -2.9770 -9.4600 14 6 3.2634 -2.4559 -10.6735 15 1 2.6413 -1.5741 -10.7161 16 6 3.6915 -3.0616 -11.8485 17 7 4.4489 -4.1341 -11.7966 18 14 3.1892 -2.3520 -13.5018 19 1 2.3411 -1.1518 -13.2883 20 1 4.4037 -1.9698 -14.2660 21 1 2.4238 -3.3699 -14.2655 22 6 3.2885 -2.4877 -2.2287 23 6 2.8276 -1.8341 -1.1023 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.0679 0.6351 -2.5831 32 1 1.8946 -0.5164 -4.5955 33 1 1.9356 -2.1162 -5.9460 34 1 3.3897 -1.0896 -5.9464 35 1 4.7081 -2.9591 -6.9045 36 1 3.2536 -3.9850 -6.9037 37 1 4.1901 -3.7691 -9.4217 38 1 4.7474 -4.5572 -12.6168 39 1 3.9087 -3.3660 -2.1281 40 1 3.0880 -2.2017 -0.1208 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299643186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:28 Heat of formation + Delta-G solvation = -93.778064 kcal Electronic energy + Delta-G solvation = -20253.972319 eV Core-core repulsion = 17032.287456 eV Total energy + Delta-G solvation = -3221.684864 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.25199 -40.23085 -39.02096 -36.13096 -35.69931 -33.46036 -32.70739 -31.91335 -29.69613 -27.93435 -27.37246 -25.22357 -24.21059 -22.81250 -21.02375 -20.90787 -19.95024 -19.28893 -17.68613 -17.34503 -17.00776 -16.54634 -16.32433 -15.85531 -15.67619 -15.36731 -15.15588 -14.42895 -14.41348 -14.40731 -14.12710 -13.77480 -13.58339 -13.52428 -13.11272 -12.94928 -12.70673 -12.63724 -12.44079 -12.12118 -12.03051 -12.01356 -11.65735 -11.58543 -11.56871 -11.42480 -10.51157 -10.08758 -9.94583 -9.01939 -8.51550 -6.01366 0.39871 0.46219 1.34487 1.41000 1.55186 1.94672 1.99439 2.32022 2.79804 3.15450 3.33263 3.73095 3.81086 3.90751 3.96603 3.96756 4.18370 4.26411 4.37880 4.42169 4.46378 4.59018 4.60552 4.71134 4.77622 4.84588 4.86200 4.99159 5.03834 5.12098 5.14722 5.36686 5.37639 5.40234 5.43107 5.47977 5.74858 5.87461 5.93007 6.41483 6.50742 7.04934 7.46479 7.99976 8.65895 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042908 B = 0.002607 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.395839 B =10738.227664 C =11194.262799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.049 4.049 3 C -0.144 4.144 4 C -0.118 4.118 5 C -0.080 4.080 6 C -0.221 4.221 7 C 0.103 3.897 8 O -0.326 6.326 9 C 0.093 3.907 10 C -0.116 4.116 11 C 0.442 3.558 12 O -0.636 6.636 13 N -0.565 5.565 14 C -0.338 4.338 15 H 0.082 0.918 16 C -0.012 4.012 17 N -0.917 5.917 18 Si 0.996 3.004 19 H -0.272 1.272 20 H -0.270 1.270 21 H -0.270 1.270 22 C -0.159 4.159 23 C -0.079 4.079 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.134 0.866 32 H 0.120 0.880 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.399 0.601 38 H 0.280 0.720 39 H 0.141 0.859 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.943 4.145 23.345 23.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.067 4.067 3 C -0.202 4.202 4 C -0.119 4.119 5 C -0.098 4.098 6 C -0.239 4.239 7 C 0.058 3.942 8 O -0.240 6.240 9 C 0.018 3.982 10 C -0.156 4.156 11 C 0.229 3.771 12 O -0.524 6.524 13 N -0.201 5.201 14 C -0.467 4.467 15 H 0.100 0.900 16 C -0.212 4.212 17 N -0.558 5.558 18 Si 0.819 3.181 19 H -0.197 1.197 20 H -0.195 1.195 21 H -0.195 1.195 22 C -0.177 4.177 23 C -0.096 4.096 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.152 0.848 32 H 0.138 0.862 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.233 0.767 38 H 0.089 0.911 39 H 0.159 0.841 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.189 4.496 23.127 23.774 hybrid contribution 0.041 -0.058 -1.421 1.423 sum -3.148 4.438 21.706 22.377 Atomic orbital electron populations 1.21869 0.94103 1.01894 1.02306 1.20099 0.96080 0.96036 0.94517 1.21867 1.00996 0.95000 1.02301 1.20081 0.99723 0.97029 0.95021 1.20950 0.98306 0.99227 0.91350 1.21440 1.03620 0.98365 1.00511 1.19364 0.95079 0.92488 0.87275 1.85937 1.71278 1.53557 1.13222 1.22176 0.99349 0.96864 0.79841 1.21207 1.03808 1.01224 0.89408 1.20446 0.84357 0.85969 0.86286 1.90498 1.43934 1.29748 1.88233 1.41922 1.45864 1.27575 1.04747 1.19749 1.31269 1.12162 0.83520 0.90042 1.26107 0.96020 0.96123 1.02968 1.69676 1.35028 1.20279 1.30779 0.84832 0.78313 0.78201 0.76758 1.19684 1.19484 1.19473 1.20683 1.04783 1.03106 0.89143 1.21184 0.95762 0.94187 0.98507 0.92950 0.91019 0.93052 0.89108 0.91013 0.92953 0.93070 0.84848 0.86246 0.92268 0.92266 0.87250 0.87241 0.76670 0.91096 0.84135 0.82645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.00 71.98 0.65 -1.20 16 2 C -0.05 -0.67 3.09 -11.54 -0.04 -0.70 16 3 C -0.14 -1.84 9.01 71.98 0.65 -1.20 16 4 C -0.12 -2.27 4.78 -19.85 -0.09 -2.36 16 5 C -0.08 -1.83 8.70 22.26 0.19 -1.63 16 6 C -0.22 -6.16 9.04 22.36 0.20 -5.96 16 7 C 0.10 2.98 6.69 22.51 0.15 3.13 16 8 O -0.33 -10.39 10.14 -92.48 -0.94 -11.33 16 9 C 0.09 3.20 4.03 71.98 0.29 3.49 16 10 C -0.12 -4.13 6.07 29.85 0.18 -3.95 16 11 C 0.44 21.12 7.78 87.66 0.68 21.80 16 12 O -0.64 -35.02 15.56 -3.06 -0.05 -35.06 16 13 N -0.57 -29.14 5.29 -306.98 -1.62 -30.76 16 14 C -0.34 -19.15 9.68 84.04 0.81 -18.33 16 15 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 16 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 17 N -0.92 -49.31 13.05 21.66 0.28 -49.03 16 18 Si 1.00 42.60 29.55 68.60 2.03 44.62 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 21 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 22 C -0.16 -3.73 9.99 22.37 0.22 -3.50 16 23 C -0.08 -1.48 9.66 22.25 0.22 -1.27 16 24 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.05 0.71 7.37 -2.39 -0.02 0.69 16 27 H 0.09 0.98 7.87 -2.39 -0.02 0.96 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.71 7.40 -2.39 -0.02 0.69 16 31 H 0.13 2.60 7.09 -2.91 -0.02 2.58 16 32 H 0.12 3.55 6.30 -2.91 -0.02 3.53 16 33 H 0.06 2.12 7.62 -2.39 -0.02 2.10 16 34 H 0.06 2.12 7.62 -2.38 -0.02 2.10 16 35 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 36 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 37 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16 38 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 39 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16 40 H 0.16 1.93 7.94 -2.91 -0.02 1.90 16 Total: -1.00 -65.81 337.42 4.59 -61.22 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: 0.30 Total: 32.19 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 4.58 Total: -11.85 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -1.34 Total: -79.79 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: -0.98 Total: -46.39 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -65.81 4.59 -61.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299643186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.561 kcal (2) G-P(sol) polarization free energy of solvation -65.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds