Wall clock time and date at job start Mon Mar 30 2020 02:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.86854 * 2 1 4 4 C 1.54163 * 109.90436 * 238.85682 * 2 1 3 5 5 C 1.54806 * 104.15881 * 242.63592 * 4 2 1 6 6 H 1.08995 * 110.90737 * 262.62286 * 5 4 2 7 7 N 1.46505 * 110.90674 * 139.05739 * 5 4 2 8 8 C 1.39666 * 119.99696 * 157.92885 * 7 5 4 9 9 C 1.39010 * 120.04607 * 359.97438 * 8 7 5 10 10 C 1.38143 * 120.06390 * 180.23649 * 9 8 7 11 11 C 1.38173 * 120.14515 * 359.48626 * 10 9 8 12 12 C 1.38915 * 120.07673 * 0.51392 * 11 10 9 13 13 O 1.35751 * 120.03497 * 179.72097 * 12 11 10 14 14 C 1.34823 * 117.00270 * 174.48127 * 13 12 11 15 15 H 1.08004 * 120.00526 * 5.06406 * 14 13 12 16 16 C 1.38657 * 119.99926 * 185.05459 * 14 13 12 17 17 N 1.31557 * 120.00122 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99814 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47144 * 90.00289 * 18 16 14 20 20 H 1.48497 * 109.46753 * 210.00372 * 18 16 14 21 21 H 1.48499 * 109.47087 * 330.00027 * 18 16 14 22 22 C 1.38756 * 120.03688 * 179.97438 * 8 7 5 23 23 C 1.54996 * 102.12457 * 20.84035 * 5 4 2 24 24 O 1.43747 * 109.87874 * 121.00390 * 2 1 3 25 25 H 1.08996 * 109.47170 * 300.44999 * 1 2 3 26 26 H 1.08997 * 109.46882 * 60.44780 * 1 2 3 27 27 H 1.08999 * 109.46780 * 180.44532 * 1 2 3 28 28 H 1.09000 * 109.46434 * 179.54929 * 3 2 1 29 29 H 1.08999 * 109.47143 * 299.55223 * 3 2 1 30 30 H 1.08995 * 109.46908 * 59.55073 * 3 2 1 31 31 H 1.08995 * 110.52104 * 123.95393 * 4 2 1 32 32 H 1.08999 * 110.48012 * 1.29276 * 4 2 1 33 33 H 0.96995 * 119.99643 * 337.92128 * 7 5 4 34 34 H 1.08001 * 119.96382 * 359.95520 * 9 8 7 35 35 H 1.08004 * 119.92757 * 179.72202 * 10 9 8 36 36 H 1.07997 * 119.96114 * 180.25343 * 11 10 9 37 37 H 0.97000 * 119.99662 * 180.02562 * 17 16 14 38 38 H 1.08000 * 120.07264 * 0.04190 * 22 8 7 39 39 H 1.09002 * 110.62086 * 81.49563 * 23 5 4 40 40 H 1.09004 * 110.61579 * 204.49530 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4390 0.0000 4 6 2.0549 -0.7497 -1.2406 5 6 2.8325 -1.9533 -0.6549 6 1 3.9004 -1.7405 -0.6074 7 7 2.5782 -3.1685 -1.4327 8 6 3.4876 -4.2277 -1.3904 9 6 4.6346 -4.1296 -0.6111 10 6 5.5367 -5.1750 -0.5729 11 6 5.2972 -6.3252 -1.3002 12 6 4.1530 -6.4296 -2.0809 13 8 3.9213 -7.5578 -2.7995 14 6 2.7402 -7.6412 -3.4442 15 1 2.0633 -6.7996 -3.4425 16 6 2.3945 -8.8075 -4.1097 17 7 3.2187 -9.8328 -4.1116 18 14 0.7582 -8.9227 -5.0036 19 1 0.9274 -8.4666 -6.4066 20 1 0.2873 -10.3311 -4.9942 21 1 -0.2408 -8.0623 -4.3203 22 6 3.2473 -5.3792 -2.1263 23 6 2.2281 -2.0703 0.7675 24 8 2.0188 -0.6963 1.1587 25 1 -0.3633 0.5208 0.8859 26 1 -0.3633 0.5069 -0.8940 27 1 -0.3633 -1.0276 0.0080 28 1 3.1400 1.4313 0.0081 29 1 1.6968 1.9530 -0.8940 30 1 1.6837 1.9576 0.8859 31 1 2.7210 -0.1104 -1.8199 32 1 1.2249 -1.0951 -1.8569 33 1 1.7782 -3.2374 -1.9768 34 1 4.8227 -3.2333 -0.0386 35 1 6.4294 -5.0947 0.0298 36 1 6.0025 -7.1423 -1.2649 37 1 2.9770 -10.6485 -4.5775 38 1 2.3574 -5.4578 -2.7331 39 1 1.2813 -2.6098 0.7392 40 1 2.9295 -2.5592 1.4436 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396922706.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:19 Heat of formation + Delta-G solvation = -48.451007 kcal Electronic energy + Delta-G solvation = -21225.939999 eV Core-core repulsion = 18006.220664 eV Total energy + Delta-G solvation = -3219.719335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.22866 -38.92654 -36.92103 -34.63849 -33.31000 -32.20827 -30.83229 -28.78382 -27.67002 -27.46438 -25.98474 -25.23411 -22.24106 -21.65332 -20.39475 -20.12878 -17.89256 -17.59127 -16.14866 -16.11609 -15.54936 -15.13701 -14.96417 -14.47589 -14.26713 -13.84484 -13.74732 -13.54100 -13.24728 -12.95814 -12.88182 -12.54751 -12.34342 -12.07815 -11.91147 -11.87013 -11.63574 -11.37928 -11.17581 -10.92161 -10.81501 -10.75205 -10.53730 -10.38818 -9.89167 -9.40557 -9.36664 -8.76541 -7.37842 -6.81567 -6.41597 -4.00933 2.36501 2.53828 3.13355 3.14315 3.18764 3.42639 3.94155 3.99159 4.32884 4.52285 4.60619 4.71816 4.85933 4.98618 5.05441 5.15535 5.33016 5.36263 5.37620 5.44301 5.54980 5.61305 5.63849 5.70022 5.77260 5.81389 5.90562 5.99905 6.02231 6.26700 6.34628 6.59516 6.63390 6.80795 7.01723 7.14455 7.37953 7.47371 7.64213 7.97360 8.04208 8.15331 9.04446 9.76910 10.76744 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021888 B = 0.003966 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.924763 B = 7058.059608 C = 8067.974470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.098 3.902 3 C -0.143 4.143 4 C -0.154 4.154 5 C 0.129 3.871 6 H 0.095 0.905 7 N -0.742 5.742 8 C 0.246 3.754 9 C -0.280 4.280 10 C -0.040 4.040 11 C -0.235 4.235 12 C 0.189 3.811 13 O -0.178 6.178 14 C -0.390 4.390 15 H 0.091 0.909 16 C 0.039 3.961 17 N -0.864 5.864 18 Si 0.940 3.060 19 H -0.274 1.274 20 H -0.278 1.278 21 H -0.269 1.269 22 C -0.300 4.300 23 C 0.031 3.969 24 O -0.368 6.368 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.396 0.604 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.269 0.731 38 H 0.124 0.876 39 H 0.063 0.937 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.799 18.493 6.181 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.058 3.942 3 C -0.200 4.200 4 C -0.193 4.193 5 C 0.022 3.978 6 H 0.113 0.887 7 N -0.375 5.375 8 C 0.146 3.854 9 C -0.303 4.303 10 C -0.058 4.058 11 C -0.255 4.255 12 C 0.135 3.865 13 O -0.081 6.081 14 C -0.466 4.466 15 H 0.108 0.892 16 C -0.165 4.165 17 N -0.499 5.499 18 Si 0.765 3.235 19 H -0.200 1.200 20 H -0.203 1.203 21 H -0.193 1.193 22 C -0.324 4.324 23 C -0.048 4.048 24 O -0.287 6.287 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.230 0.770 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.079 0.921 38 H 0.142 0.858 39 H 0.081 0.919 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.549 18.272 6.360 19.670 hybrid contribution -1.276 -0.199 -0.873 1.559 sum -4.825 18.073 5.488 19.494 Atomic orbital electron populations 1.22262 0.94876 1.02574 1.02388 1.22064 0.93691 0.93214 0.85234 1.21902 1.01834 0.93945 1.02341 1.23280 1.00870 0.97205 0.97916 1.22263 1.00359 0.84660 0.90555 0.88705 1.44442 1.25532 1.14575 1.52947 1.17464 0.88628 0.86485 0.92812 1.20107 0.98176 1.01325 1.10656 1.20384 0.97069 0.92146 0.96247 1.20058 0.99868 1.00232 1.05379 1.19069 0.92365 0.86431 0.88653 1.83987 1.36627 1.32790 1.54678 1.21294 0.93725 1.00910 1.30675 0.89207 1.25272 0.99376 0.94354 0.97539 1.70041 1.35692 1.03645 1.40543 0.85737 0.80324 0.78069 0.79414 1.19955 1.20274 1.19325 1.20502 1.05247 0.95073 1.11556 1.24122 1.00608 0.83470 0.96567 1.88913 1.86027 1.20903 1.32837 0.91876 0.91622 0.92204 0.91776 0.91346 0.91901 0.89731 0.90013 0.76971 0.87780 0.87138 0.86869 0.92093 0.85791 0.91875 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 8.61 37.16 0.32 -1.10 16 2 C 0.10 0.95 1.19 -90.01 -0.11 0.84 16 3 C -0.14 -1.15 8.68 37.16 0.32 -0.83 16 4 C -0.15 -1.50 6.02 -25.17 -0.15 -1.65 16 5 C 0.13 1.55 3.13 -65.92 -0.21 1.34 16 6 H 0.10 1.19 6.52 -51.93 -0.34 0.85 16 7 N -0.74 -10.69 5.38 -50.25 -0.27 -10.96 16 8 C 0.25 4.52 6.65 -83.81 -0.56 3.96 16 9 C -0.28 -4.92 9.22 -39.33 -0.36 -5.28 16 10 C -0.04 -0.72 10.03 -39.64 -0.40 -1.12 16 11 C -0.23 -5.10 9.99 -39.35 -0.39 -5.49 16 12 C 0.19 4.66 6.64 -39.13 -0.26 4.40 16 13 O -0.18 -5.14 9.76 0.07 0.00 -5.14 16 14 C -0.39 -10.97 9.49 30.89 0.29 -10.68 16 15 H 0.09 2.34 5.20 -52.48 -0.27 2.07 16 16 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 17 N -0.86 -25.54 13.67 55.48 0.76 -24.79 16 18 Si 0.94 20.60 29.55 -169.99 -5.02 15.58 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 C -0.30 -6.56 9.01 -39.19 -0.35 -6.91 16 23 C 0.03 0.37 7.36 38.21 0.28 0.65 16 24 O -0.37 -4.52 10.86 -35.23 -0.38 -4.90 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.75 7.70 -51.93 -0.40 0.35 16 32 H 0.08 0.75 7.30 -51.93 -0.38 0.37 16 33 H 0.40 5.27 8.38 -40.82 -0.34 4.93 16 34 H 0.10 1.58 6.24 -52.49 -0.33 1.25 16 35 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 36 H 0.11 2.39 8.06 -52.49 -0.42 1.97 16 37 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.12 2.72 5.64 -52.49 -0.30 2.42 16 39 H 0.06 0.79 8.13 -51.93 -0.42 0.36 16 40 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 328.57 15.07 4.95 4.95 Total: -1.00 -31.04 328.57 -7.35 -38.39 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.72 Total: 7.75 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -1.67 Total: -20.89 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.49 Total: -35.75 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.38 Total: -10.04 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.04 -7.35 -38.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396922706.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.058 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds