Wall clock time and date at job start Mon Mar 30 2020 02:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.98922 * 2 1 4 4 C 1.54102 * 109.87780 * 121.08561 * 2 1 3 5 5 C 1.54806 * 104.18885 * 117.39254 * 4 2 1 6 6 H 1.08992 * 110.91124 * 220.88554 * 5 4 2 7 7 N 1.46506 * 110.90733 * 97.31506 * 5 4 2 8 8 C 1.39780 * 120.00171 * 154.99994 * 7 5 4 9 9 C 1.38949 * 120.00725 * 180.02562 * 8 7 5 10 10 C 1.38004 * 119.99354 * 179.97438 * 9 8 7 11 11 C 1.38902 * 120.00757 * 359.97071 * 10 9 8 12 12 O 1.35796 * 119.99558 * 180.02562 * 11 10 9 13 13 C 1.34814 * 116.99905 * 5.54231 * 12 11 10 14 14 H 1.08001 * 119.99962 * 354.94516 * 13 12 11 15 15 C 1.38627 * 119.99781 * 174.94495 * 13 12 11 16 16 N 1.31573 * 120.00047 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99754 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47287 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47447 * 119.99694 * 17 15 13 20 20 H 1.48505 * 109.46879 * 239.99755 * 17 15 13 21 21 C 1.38899 * 120.00959 * 0.28615 * 11 10 9 22 22 C 1.38012 * 120.00613 * 359.48059 * 21 11 10 23 23 C 1.54997 * 102.09326 * 339.11969 * 5 4 2 24 24 O 1.43741 * 109.87561 * 238.91627 * 2 1 3 25 25 H 1.09006 * 109.46931 * 298.91428 * 1 2 3 26 26 H 1.09003 * 109.47489 * 58.91332 * 1 2 3 27 27 H 1.09004 * 109.47132 * 178.91788 * 1 2 3 28 28 H 1.09001 * 109.46974 * 181.08555 * 3 2 1 29 29 H 1.09000 * 109.46905 * 301.08366 * 3 2 1 30 30 H 1.08995 * 109.47217 * 61.08642 * 3 2 1 31 31 H 1.08999 * 110.48830 * 358.71515 * 4 2 1 32 32 H 1.09001 * 110.59935 * 236.12593 * 4 2 1 33 33 H 0.97001 * 119.99509 * 335.00078 * 7 5 4 34 34 H 1.07995 * 119.99904 * 359.95239 * 9 8 7 35 35 H 1.08001 * 119.99817 * 180.02562 * 10 9 8 36 36 H 0.97001 * 120.00236 * 180.02562 * 16 15 13 37 37 H 1.08002 * 119.99383 * 179.74343 * 21 11 10 38 38 H 1.08002 * 120.00306 * 180.27617 * 22 21 11 39 39 H 1.09000 * 110.62246 * 155.52099 * 23 5 4 40 40 H 1.09000 * 110.61653 * 278.52052 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0530 1.4378 0.0000 4 6 2.0540 -0.7482 1.2411 5 6 2.8324 -1.9525 0.6576 6 1 2.6436 -2.8557 1.2377 7 7 4.2677 -1.6657 0.5934 8 6 5.1914 -2.7147 0.6098 9 6 6.5527 -2.4428 0.5494 10 6 7.4645 -3.4786 0.5661 11 6 7.0215 -4.7928 0.6438 12 8 7.9189 -5.8119 0.6607 13 6 9.2237 -5.4774 0.7155 14 1 9.5179 -4.4397 0.6614 15 6 10.1878 -6.4656 0.8414 16 7 9.8293 -7.7298 0.9078 17 14 11.9958 -6.0021 0.9180 18 1 12.1329 -4.5265 0.8242 19 1 12.5734 -6.4726 2.2026 20 1 12.7183 -6.6389 -0.2124 21 6 5.6606 -5.0651 0.6987 22 6 4.7485 -4.0294 0.6870 23 6 2.2280 -2.0714 -0.7647 24 8 2.0187 -0.6979 -1.1577 25 1 -0.3633 0.4969 0.8996 26 1 -0.3634 0.5306 -0.8801 27 1 -0.3633 -1.0275 -0.0194 28 1 3.1428 1.4280 -0.0195 29 1 1.6786 1.9606 -0.8801 30 1 1.7103 1.9491 0.8995 31 1 1.2237 -1.0931 1.8574 32 1 2.7192 -0.1091 1.8217 33 1 4.5769 -0.7479 0.5396 34 1 6.8971 -1.4210 0.4891 35 1 8.5226 -3.2674 0.5196 36 1 10.5039 -8.4212 0.9962 37 1 5.3163 -6.0872 0.7550 38 1 3.6904 -4.2410 0.7342 39 1 2.9294 -2.5612 -1.4402 40 1 1.2813 -2.6108 -0.7356 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396923708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:24 Heat of formation + Delta-G solvation = -44.887427 kcal Electronic energy + Delta-G solvation = -21096.709921 eV Core-core repulsion = 17877.145115 eV Total energy + Delta-G solvation = -3219.564807 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.25044 -38.87341 -36.89070 -34.26869 -33.27854 -32.10598 -30.56484 -29.91416 -27.73236 -26.81176 -25.99918 -25.05082 -22.51941 -21.36310 -20.46081 -20.18869 -17.82622 -17.28083 -16.56607 -16.30127 -15.69366 -15.14179 -14.79019 -14.40770 -13.91515 -13.87251 -13.66746 -13.42459 -13.37013 -12.78426 -12.68756 -12.49137 -12.43072 -12.10442 -11.91566 -11.66162 -11.63015 -11.50247 -11.23604 -11.10047 -10.93715 -10.82233 -10.51010 -10.34125 -9.89246 -9.22354 -9.14259 -8.44075 -8.17836 -6.40763 -6.32382 -3.89498 2.19726 2.55541 3.18299 3.19736 3.24971 3.66586 3.77956 4.06228 4.32763 4.57567 4.60216 4.70321 4.88194 4.93863 5.18892 5.20387 5.28164 5.32485 5.40341 5.42834 5.54734 5.59752 5.62652 5.65678 5.71191 5.78957 5.83371 5.90199 6.01109 6.21955 6.24281 6.52593 6.82683 6.86008 6.92487 7.12787 7.32913 7.45017 7.63987 7.96703 8.12170 8.22811 9.13756 9.88072 10.86465 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.047992 B = 0.003136 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.292797 B = 8927.010843 C = 9264.574604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 C -0.143 4.143 4 C -0.155 4.155 5 C 0.130 3.870 6 H 0.094 0.906 7 N -0.744 5.744 8 C 0.123 3.877 9 C -0.140 4.140 10 C -0.189 4.189 11 C 0.114 3.886 12 O -0.188 6.188 13 C -0.386 4.386 14 H 0.089 0.911 15 C 0.036 3.964 16 N -0.869 5.869 17 Si 0.938 3.062 18 H -0.268 1.268 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.150 4.150 22 C -0.148 4.148 23 C 0.027 3.973 24 O -0.365 6.365 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.392 0.608 34 H 0.106 0.894 35 H 0.127 0.873 36 H 0.267 0.733 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.920 14.884 0.318 21.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.055 3.945 3 C -0.200 4.200 4 C -0.193 4.193 5 C 0.022 3.978 6 H 0.112 0.888 7 N -0.379 5.379 8 C 0.025 3.975 9 C -0.162 4.162 10 C -0.209 4.209 11 C 0.062 3.938 12 O -0.093 6.093 13 C -0.463 4.463 14 H 0.106 0.894 15 C -0.167 4.167 16 N -0.505 5.505 17 Si 0.763 3.237 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.203 1.203 21 C -0.170 4.170 22 C -0.170 4.170 23 C -0.051 4.051 24 O -0.284 6.284 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.226 0.774 34 H 0.124 0.876 35 H 0.145 0.855 36 H 0.077 0.923 37 H 0.135 0.865 38 H 0.128 0.872 39 H 0.116 0.884 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.935 14.401 0.147 21.479 hybrid contribution 0.972 0.509 0.179 1.112 sum -14.963 14.909 0.326 21.125 Atomic orbital electron populations 1.22255 0.95040 1.02406 1.02300 1.22103 0.93478 0.93302 0.85646 1.21891 1.01802 0.94104 1.02191 1.23357 1.00590 0.97552 0.97841 1.22137 0.82375 0.97962 0.95346 0.88843 1.44116 1.01998 1.06274 1.85481 1.17397 0.88671 0.87699 1.03731 1.20227 0.90942 0.98135 1.06882 1.20997 0.99898 0.92100 1.07936 1.19243 0.90249 0.87976 0.96372 1.83986 1.15617 1.28907 1.80828 1.21287 0.78941 0.94318 1.51768 0.89392 1.25217 0.99797 0.94687 0.97006 1.70054 1.34067 0.99292 1.47131 0.85697 0.81178 0.78698 0.78123 1.19253 1.20313 1.20313 1.20020 0.90366 0.98709 1.07905 1.20181 0.98090 0.90693 1.07992 1.24184 0.99613 0.83983 0.97331 1.88926 1.85936 1.20838 1.32697 0.91726 0.91988 0.92265 0.91883 0.92015 0.91470 0.89685 0.89704 0.77417 0.87636 0.85486 0.92347 0.86511 0.87176 0.88399 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 8.61 37.16 0.32 -0.93 16 2 C 0.09 0.87 1.19 -90.04 -0.11 0.76 16 3 C -0.14 -1.17 8.68 37.16 0.32 -0.85 16 4 C -0.16 -1.37 5.92 -25.20 -0.15 -1.51 16 5 C 0.13 1.44 3.23 -65.92 -0.21 1.23 16 6 H 0.09 1.03 6.36 -51.93 -0.33 0.70 16 7 N -0.74 -9.96 5.33 -50.18 -0.27 -10.23 16 8 C 0.12 2.09 6.66 -83.71 -0.56 1.53 16 9 C -0.14 -2.59 9.89 -39.40 -0.39 -2.98 16 10 C -0.19 -4.17 9.16 -39.42 -0.36 -4.53 16 11 C 0.11 2.79 6.65 -39.09 -0.26 2.53 16 12 O -0.19 -5.48 9.76 -0.05 0.00 -5.48 16 13 C -0.39 -11.02 9.48 30.88 0.29 -10.73 16 14 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 15 C 0.04 1.01 5.49 -17.52 -0.10 0.91 16 16 N -0.87 -26.06 13.67 55.48 0.76 -25.30 16 17 Si 0.94 21.00 29.55 -169.99 -5.02 15.98 16 18 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 21 C -0.15 -3.18 9.98 -39.42 -0.39 -3.58 16 22 C -0.15 -2.62 9.22 -39.40 -0.36 -2.98 16 23 C 0.03 0.31 7.35 38.21 0.28 0.59 16 24 O -0.36 -4.47 10.86 -35.23 -0.38 -4.85 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.45 8.11 -51.93 -0.42 0.03 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.62 7.70 -51.93 -0.40 0.22 16 32 H 0.08 0.73 7.58 -51.93 -0.39 0.34 16 33 H 0.39 4.85 8.64 -40.82 -0.35 4.50 16 34 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.13 2.81 5.63 -52.49 -0.30 2.52 16 36 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 38 H 0.11 1.63 6.18 -52.49 -0.32 1.31 16 39 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 LS Contribution 328.78 15.07 4.95 4.95 Total: -1.00 -31.65 328.78 -7.36 -39.01 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -5.73 Total: 6.45 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: -1.67 Total: -20.53 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.49 Total: -35.53 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -0.38 Total: -10.33 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.65 -7.36 -39.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396923708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.880 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds