Wall clock time and date at job start Mon Mar 30 2020 02:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34217 * 125.43640 * 2 1 4 4 C 1.33658 * 110.90335 * 179.72199 * 3 2 1 5 5 C 1.50707 * 125.79665 * 180.28884 * 4 3 2 6 6 C 1.36415 * 108.40005 * 0.44224 * 4 3 2 7 7 C 1.47378 * 127.19130 * 179.83767 * 6 4 3 8 8 O 1.21614 * 119.99773 * 269.68364 * 7 6 4 9 9 N 1.34777 * 119.99968 * 89.68919 * 7 6 4 10 10 C 1.46498 * 119.99966 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47299 * 184.79547 * 10 9 7 12 12 C 1.50704 * 115.54588 * 294.81766 * 11 10 9 13 13 H 1.07999 * 119.99785 * 95.20816 * 12 11 10 14 14 C 1.37877 * 119.99726 * 274.92551 * 12 11 10 15 15 N 1.31515 * 120.00084 * 355.41881 * 14 12 11 16 16 Si 1.86796 * 120.00102 * 175.42113 * 14 12 11 17 17 H 1.48504 * 109.47025 * 89.99775 * 16 14 12 18 18 H 1.48493 * 109.47332 * 210.00070 * 16 14 12 19 19 H 1.48499 * 109.47076 * 330.00113 * 16 14 12 20 20 C 1.53001 * 117.49754 * 80.48183 * 11 10 9 21 21 C 1.52994 * 117.50156 * 149.14359 * 11 10 9 22 22 C 1.34182 * 125.43701 * 179.97438 * 2 1 3 23 23 C 1.50697 * 127.02396 * 359.97438 * 22 2 1 24 24 H 1.08995 * 109.47718 * 270.00424 * 1 2 3 25 25 H 1.08995 * 109.46793 * 30.01039 * 1 2 3 26 26 H 1.09003 * 109.46533 * 150.00386 * 1 2 3 27 27 H 1.09001 * 109.46700 * 270.17931 * 5 4 3 28 28 H 1.08994 * 109.47401 * 30.18295 * 5 4 3 29 29 H 1.09000 * 109.46630 * 150.18406 * 5 4 3 30 30 H 0.96999 * 119.99492 * 359.97438 * 9 7 6 31 31 H 1.09001 * 109.47302 * 64.79393 * 10 9 7 32 32 H 1.09005 * 109.46853 * 304.79585 * 10 9 7 33 33 H 0.97004 * 120.00173 * 185.00091 * 15 14 12 34 34 H 1.09003 * 117.49648 * 214.99946 * 20 11 10 35 35 H 1.08991 * 117.50066 * 0.03054 * 20 11 10 36 36 H 1.08996 * 117.49909 * 359.97438 * 21 11 10 37 37 H 1.09006 * 117.50020 * 144.97002 * 21 11 10 38 38 H 1.09007 * 109.47112 * 270.02495 * 23 22 2 39 39 H 1.09000 * 109.47090 * 30.02077 * 23 22 2 40 40 H 1.08993 * 109.47364 * 150.02174 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2852 1.0935 0.0000 4 6 3.5790 0.7582 0.0061 5 6 4.7390 1.7202 0.0141 6 6 3.6711 -0.6029 0.0003 7 6 4.9025 -1.4125 0.0004 8 8 5.4106 -1.7467 -1.0528 9 7 5.4655 -1.7826 1.1677 10 6 6.6899 -2.5870 1.1679 11 6 7.0497 -2.9680 2.6053 12 6 7.4193 -1.8198 3.5089 13 1 6.6708 -1.3705 4.1447 14 6 8.7142 -1.3469 3.5280 15 7 9.6465 -1.9540 2.8266 16 14 9.1446 0.1562 4.5502 17 1 9.5440 -0.2713 5.9152 18 1 10.2696 0.8843 3.9105 19 1 7.9623 1.0504 4.6377 20 6 6.3033 -4.1477 3.2314 21 6 7.7710 -4.2994 2.8239 22 6 2.2850 -1.0933 0.0005 23 6 1.8309 -2.5302 0.0017 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8899 -0.5140 26 1 -0.3632 -0.8901 -0.5138 27 1 5.0219 1.9567 -1.0116 28 1 4.4490 2.6348 0.5311 29 1 5.5851 1.2647 0.5286 30 1 5.0603 -1.5158 2.0076 31 1 7.5042 -2.0093 0.7304 32 1 6.5304 -3.4917 0.5812 33 1 10.5704 -1.6666 2.8963 34 1 6.0796 -4.0935 4.2968 35 1 5.5563 -4.6527 2.6190 36 1 7.9888 -4.9042 1.9436 37 1 8.5132 -4.3449 3.6209 38 1 1.7213 -2.8758 1.0297 39 1 0.8728 -2.6088 -0.5121 40 1 2.5699 -3.1452 -0.5116 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404146207.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:22 Heat of formation + Delta-G solvation = -35.167550 kcal Electronic energy + Delta-G solvation = -21654.232378 eV Core-core repulsion = 18435.089057 eV Total energy + Delta-G solvation = -3219.143321 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.58354 -40.50277 -38.46714 -35.26603 -34.98005 -34.03757 -33.87256 -30.59549 -29.34848 -28.20180 -27.23087 -25.37824 -23.84687 -22.91347 -21.38971 -20.96465 -20.12467 -18.41624 -17.92213 -17.50258 -16.88900 -16.71653 -16.42673 -16.08398 -15.52468 -15.03921 -14.62726 -14.53093 -14.37217 -14.16881 -13.89046 -13.76420 -13.62007 -13.50143 -13.45903 -13.25800 -12.95231 -12.93765 -12.82258 -12.37570 -12.22173 -12.04252 -11.50870 -11.18120 -10.97070 -10.46369 -10.42258 -10.10258 -9.92290 -9.25100 -8.09631 -6.24209 0.58754 1.20245 1.41800 1.44816 1.48537 1.52881 1.77193 2.36476 2.43611 3.17963 3.46251 3.52266 3.79916 3.92111 4.10688 4.23076 4.33368 4.39554 4.51400 4.51630 4.61418 4.65862 4.69063 4.69765 4.81914 4.85421 4.90636 4.95310 4.99815 5.02318 5.07898 5.19539 5.26673 5.49567 5.53700 5.56447 5.67544 5.76998 6.09909 6.35570 6.63609 6.83157 7.21897 7.45677 8.97313 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018610 B = 0.005232 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.228010 B = 5350.800265 C = 6063.659852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.013 4.013 3 O -0.175 6.175 4 C 0.038 3.962 5 C -0.080 4.080 6 C -0.252 4.252 7 C 0.587 3.413 8 O -0.592 6.592 9 N -0.685 5.685 10 C 0.178 3.822 11 C 0.001 3.999 12 C -0.504 4.504 13 H 0.061 0.939 14 C 0.027 3.973 15 N -0.907 5.907 16 Si 0.948 3.052 17 H -0.277 1.277 18 H -0.290 1.290 19 H -0.264 1.264 20 C -0.178 4.178 21 C -0.150 4.150 22 C -0.168 4.168 23 C -0.080 4.080 24 H 0.098 0.902 25 H 0.088 0.912 26 H 0.107 0.893 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.077 0.923 30 H 0.409 0.591 31 H 0.031 0.969 32 H 0.039 0.961 33 H 0.259 0.741 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.886 4.525 -2.730 18.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.061 4.061 3 O -0.073 6.073 4 C -0.014 4.014 5 C -0.136 4.136 6 C -0.256 4.256 7 C 0.373 3.627 8 O -0.474 6.474 9 N -0.333 5.333 10 C 0.054 3.946 11 C 0.000 4.000 12 C -0.542 4.542 13 H 0.080 0.920 14 C -0.174 4.174 15 N -0.544 5.544 16 Si 0.774 3.226 17 H -0.203 1.203 18 H -0.216 1.216 19 H -0.188 1.188 20 C -0.215 4.215 21 C -0.188 4.188 22 C -0.170 4.170 23 C -0.137 4.137 24 H 0.117 0.883 25 H 0.107 0.893 26 H 0.125 0.875 27 H 0.114 0.886 28 H 0.127 0.873 29 H 0.096 0.904 30 H 0.245 0.755 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -17.436 4.604 -3.540 18.378 hybrid contribution 1.156 0.454 0.734 1.442 sum -16.281 5.058 -2.806 17.278 Atomic orbital electron populations 1.20538 0.81268 1.05509 1.05068 1.22770 0.95426 0.82290 1.05648 1.83657 1.15622 1.35788 1.72202 1.22764 0.83975 0.93256 1.01401 1.20516 0.90599 0.97644 1.04831 1.21117 0.94147 0.94008 1.16324 1.17669 0.82845 0.78751 0.83387 1.90721 1.65496 1.58173 1.32973 1.45886 1.26689 1.52530 1.08147 1.20663 0.84419 0.92414 0.97085 1.19073 1.00493 0.88946 0.91451 1.20620 0.95086 1.15462 1.23033 0.92038 1.25682 0.96653 0.98958 0.96137 1.70112 1.00955 1.42170 1.41156 0.85707 0.77918 0.80298 0.78682 1.20273 1.21626 1.18792 1.22998 0.94024 1.04022 1.00493 1.22381 0.93931 1.01243 1.01260 1.21356 0.89142 0.98066 1.08427 1.20239 1.01832 0.88560 1.03067 0.88312 0.89276 0.87485 0.88591 0.87341 0.90447 0.75533 0.95044 0.94242 0.93155 0.89626 0.89520 0.91234 0.91535 0.90076 0.88322 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.21 71.24 0.73 -0.12 16 2 C -0.01 -0.31 7.28 24.76 0.18 -0.13 16 3 O -0.18 -4.76 10.52 4.40 0.05 -4.72 16 4 C 0.04 1.15 7.37 25.26 0.19 1.34 16 5 C -0.08 -2.05 10.24 71.24 0.73 -1.32 16 6 C -0.25 -8.73 6.07 -18.99 -0.12 -8.84 16 7 C 0.59 24.34 7.25 86.65 0.63 24.97 16 8 O -0.59 -29.06 17.10 -4.07 -0.07 -29.13 16 9 N -0.68 -28.12 5.48 -466.41 -2.55 -30.67 16 10 C 0.18 8.34 5.50 86.38 0.48 8.81 16 11 C 0.00 0.05 1.47 -52.93 -0.08 -0.03 16 12 C -0.50 -25.75 8.59 25.60 0.22 -25.53 16 13 H 0.06 3.05 7.82 -2.91 -0.02 3.03 16 14 C 0.03 1.40 5.43 84.65 0.46 1.86 16 15 N -0.91 -50.88 12.65 21.45 0.27 -50.61 16 16 Si 0.95 41.81 29.54 68.60 2.03 43.83 16 17 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 19 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 20 C -0.18 -7.21 9.96 30.62 0.30 -6.90 16 21 C -0.15 -6.90 9.14 30.62 0.28 -6.62 16 22 C -0.17 -4.74 6.38 -18.49 -0.12 -4.86 16 23 C -0.08 -1.84 10.15 71.23 0.72 -1.12 16 24 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.11 0.95 7.14 -2.39 -0.02 0.93 16 27 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.08 2.28 7.93 -2.39 -0.02 2.26 16 30 H 0.41 15.65 8.31 -92.71 -0.77 14.88 16 31 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.83 8.09 -2.38 -0.02 1.81 16 33 H 0.26 14.03 8.32 -92.71 -0.77 13.26 16 34 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 35 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 36 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 37 H 0.07 3.31 8.14 -2.38 -0.02 3.30 16 38 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.10 1.56 7.15 -2.39 -0.02 1.54 16 40 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -67.10 345.99 4.59 -62.51 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 0.27 Total: 27.27 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: 4.60 Total: -18.49 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -2.28 Total: -81.28 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -0.02 Total: -33.84 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -67.10 4.59 -62.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404146207.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.343 kcal (2) G-P(sol) polarization free energy of solvation -67.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds