Wall clock time and date at job start Mon Mar 30 2020 01:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35905 * 117.00443 * 2 1 4 4 C 1.38853 * 119.98104 * 359.97438 * 3 2 1 5 5 C 1.38249 * 120.23976 * 179.97438 * 4 3 2 6 6 C 1.38011 * 120.20240 * 0.03044 * 5 4 3 7 7 C 1.39559 * 119.96928 * 359.97438 * 6 5 4 8 8 C 1.47856 * 120.12084 * 179.97438 * 7 6 5 9 9 O 1.21549 * 119.99671 * 125.99704 * 8 7 6 10 10 N 1.34772 * 120.00249 * 306.00461 * 8 7 6 11 11 C 1.46507 * 119.99777 * 4.36667 * 10 8 7 12 12 C 1.46495 * 120.00325 * 184.36467 * 10 8 7 13 13 H 1.08998 * 109.46933 * 0.02562 * 12 10 8 14 14 C 1.52995 * 109.47499 * 240.00293 * 12 10 8 15 15 C 1.50707 * 109.47143 * 119.99788 * 12 10 8 16 16 H 1.08006 * 119.99668 * 0.02562 * 15 12 10 17 17 C 1.37877 * 120.00107 * 180.02562 * 15 12 10 18 18 N 1.31512 * 119.99695 * 0.02562 * 17 15 12 19 19 Si 1.86792 * 119.99846 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.47348 * 60.00641 * 19 17 15 21 21 H 1.48499 * 109.47212 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47457 * 300.00198 * 19 17 15 23 23 C 1.38452 * 119.99050 * 179.97438 * 3 2 1 24 24 C 1.50702 * 120.09824 * 359.97438 * 23 3 2 25 25 H 1.08997 * 109.46952 * 59.99952 * 1 2 3 26 26 H 1.08996 * 109.47370 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46762 * 299.99953 * 1 2 3 28 28 H 1.08003 * 119.88634 * 0.02562 * 4 3 2 29 29 H 1.07995 * 119.90088 * 179.97438 * 5 4 3 30 30 H 1.08001 * 120.01476 * 179.72214 * 6 5 4 31 31 H 1.09005 * 109.46993 * 84.68816 * 11 10 8 32 32 H 1.08999 * 109.46644 * 204.68275 * 11 10 8 33 33 H 1.08998 * 109.46982 * 324.68919 * 11 10 8 34 34 H 1.09006 * 109.46812 * 299.99578 * 14 12 10 35 35 H 1.08995 * 109.47606 * 59.99722 * 14 12 10 36 36 H 1.09001 * 109.46995 * 180.02562 * 14 12 10 37 37 H 0.97002 * 119.99660 * 180.02562 * 18 17 15 38 38 H 1.08999 * 109.47302 * 85.24503 * 24 23 3 39 39 H 1.09002 * 109.46879 * 205.24304 * 24 23 3 40 40 H 1.09001 * 109.47444 * 325.24286 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2895 2.3752 -0.0005 5 6 1.9117 3.6098 0.0000 6 6 3.2893 3.6930 0.0004 7 6 4.0581 2.5282 0.0009 8 6 5.5342 2.6135 0.0008 9 8 6.1766 2.0312 0.8526 10 7 6.1674 3.3369 -0.9437 11 6 5.3917 4.1160 -1.9122 12 6 7.6311 3.3443 -1.0021 13 1 8.0295 2.7117 -0.2088 14 6 8.1417 4.7749 -0.8191 15 6 8.0833 2.8166 -2.3394 16 1 7.3531 2.5072 -3.0726 17 6 9.4289 2.7289 -2.6268 18 7 10.3178 3.1053 -1.7336 19 14 9.9892 2.0743 -4.2840 20 1 9.4469 2.9354 -5.3656 21 1 11.4730 2.0818 -4.3433 22 1 9.4933 0.6858 -4.4612 23 6 3.4287 1.2830 0.0005 24 6 4.2514 0.0203 0.0017 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2111 2.3163 -0.0005 29 1 1.3179 4.5119 -0.0008 30 1 3.7722 4.6590 -0.0037 31 1 5.1398 5.0848 -1.4806 32 1 5.9825 4.2635 -2.8162 33 1 4.4759 3.5794 -2.1600 34 1 7.7433 5.4071 -1.6127 35 1 7.8148 5.1565 0.1481 36 1 9.2308 4.7803 -0.8630 37 1 11.2645 3.0439 -1.9360 38 1 4.3788 -0.3313 -1.0221 39 1 5.2283 0.2236 0.4403 40 1 3.7421 -0.7447 0.5878 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597143659.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:29 Heat of formation + Delta-G solvation = -64.555927 kcal Electronic energy + Delta-G solvation = -21930.063666 eV Core-core repulsion = 18709.645969 eV Total energy + Delta-G solvation = -3220.417697 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.65857 -40.41629 -38.11299 -37.19671 -34.83169 -33.77049 -32.12218 -30.52848 -28.45241 -27.99710 -27.45106 -27.29544 -24.71263 -22.87160 -22.24052 -20.33936 -18.90780 -18.37333 -17.72949 -17.34830 -16.99895 -16.70416 -16.65004 -16.17699 -15.75578 -14.90837 -14.82362 -14.49691 -14.32836 -14.18019 -13.93086 -13.60683 -13.25530 -13.19562 -13.00614 -12.99186 -12.78048 -12.76481 -12.67567 -12.47918 -12.20541 -12.11802 -11.93224 -11.87470 -11.22419 -10.71563 -10.50281 -9.82218 -9.37266 -9.13545 -8.15248 -6.32033 0.00054 0.40807 1.41250 1.43927 1.51193 1.71453 2.19711 2.39583 2.55978 2.73880 3.12756 3.60429 3.77561 4.02997 4.04993 4.24814 4.43122 4.46300 4.47633 4.53196 4.64471 4.66039 4.70389 4.76753 4.77658 4.80725 4.90370 4.99945 5.05210 5.17664 5.30020 5.37243 5.45180 5.47184 5.57291 5.65175 5.74364 6.02283 6.14703 6.44292 6.74017 6.74977 7.25214 7.42716 8.89250 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024987 B = 0.004701 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.300661 B = 5954.512994 C = 6349.390062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.333 6.333 3 C 0.116 3.884 4 C -0.181 4.181 5 C -0.077 4.077 6 C -0.126 4.126 7 C -0.100 4.100 8 C 0.543 3.457 9 O -0.594 6.594 10 N -0.589 5.589 11 C 0.083 3.917 12 C 0.261 3.739 13 H 0.009 0.991 14 C -0.131 4.131 15 C -0.541 4.541 16 H 0.060 0.940 17 C 0.017 3.983 18 N -0.916 5.916 19 Si 0.965 3.035 20 H -0.261 1.261 21 H -0.282 1.282 22 H -0.279 1.279 23 C -0.099 4.099 24 C -0.116 4.116 25 H 0.070 0.930 26 H 0.116 0.884 27 H 0.069 0.931 28 H 0.168 0.832 29 H 0.172 0.828 30 H 0.140 0.860 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.020 0.980 36 H 0.069 0.931 37 H 0.265 0.735 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.602 1.203 -0.109 22.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.248 6.248 3 C 0.071 3.929 4 C -0.199 4.199 5 C -0.095 4.095 6 C -0.144 4.144 7 C -0.103 4.103 8 C 0.331 3.669 9 O -0.477 6.477 10 N -0.318 5.318 11 C -0.060 4.060 12 C 0.160 3.840 13 H 0.027 0.973 14 C -0.189 4.189 15 C -0.579 4.579 16 H 0.078 0.922 17 C -0.183 4.183 18 N -0.555 5.555 19 Si 0.790 3.210 20 H -0.186 1.186 21 H -0.207 1.207 22 H -0.204 1.204 23 C -0.101 4.101 24 C -0.173 4.173 25 H 0.089 0.911 26 H 0.134 0.866 27 H 0.088 0.912 28 H 0.185 0.815 29 H 0.189 0.811 30 H 0.158 0.842 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.039 0.961 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -21.969 0.755 0.319 21.984 hybrid contribution 0.920 -0.447 -0.540 1.157 sum -21.048 0.308 -0.221 21.052 Atomic orbital electron populations 1.23404 0.76060 1.05646 1.02655 1.86066 1.23716 1.26329 1.88640 1.18670 0.90501 0.85841 0.97890 1.21727 1.01616 0.91179 1.05391 1.21255 0.93070 0.98637 0.96488 1.21392 0.94869 0.96767 1.01419 1.19571 0.91563 0.94725 1.04454 1.18893 0.88193 0.78502 0.81275 1.90667 1.68797 1.48439 1.39793 1.48192 1.08288 1.45566 1.29758 1.21906 0.95758 0.95438 0.92850 1.18602 0.74832 0.94409 0.96187 0.97306 1.21863 1.03077 0.96465 0.97533 1.21517 0.92362 1.43615 1.00416 0.92230 1.25720 0.96502 0.95232 1.00797 1.70017 1.01719 1.47812 1.35940 0.85507 0.77069 0.78769 0.79666 1.18572 1.20748 1.20416 1.19217 0.92067 0.94563 1.04254 1.20713 0.99507 0.94955 1.02093 0.91110 0.86612 0.91236 0.81500 0.81103 0.84223 0.90790 0.90870 0.90669 0.93230 0.96101 0.91228 0.92551 0.91761 0.92685 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -7.87 9.62 -92.48 -0.89 -8.76 16 3 C 0.12 3.07 6.65 22.47 0.15 3.22 16 4 C -0.18 -3.42 9.03 22.42 0.20 -3.22 16 5 C -0.08 -1.43 10.03 22.22 0.22 -1.21 16 6 C -0.13 -3.31 7.96 22.53 0.18 -3.13 16 7 C -0.10 -3.57 4.71 -20.10 -0.09 -3.66 16 8 C 0.54 24.90 6.55 86.79 0.57 25.47 16 9 O -0.59 -32.65 14.40 -3.87 -0.06 -32.71 16 10 N -0.59 -26.58 2.75 -830.20 -2.29 -28.86 16 11 C 0.08 2.80 8.10 127.77 1.04 3.84 16 12 C 0.26 14.10 2.63 44.25 0.12 14.22 16 13 H 0.01 0.58 6.91 -2.39 -0.02 0.56 16 14 C -0.13 -6.45 8.97 71.98 0.65 -5.81 16 15 C -0.54 -30.10 7.95 25.60 0.20 -29.89 16 16 H 0.06 3.23 7.42 -2.91 -0.02 3.21 16 17 C 0.02 0.96 5.30 84.65 0.45 1.41 16 18 N -0.92 -53.51 11.32 21.45 0.24 -53.26 16 19 Si 0.97 43.61 29.54 68.60 2.03 45.64 16 20 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 C -0.10 -3.40 5.93 -19.50 -0.12 -3.52 16 24 C -0.12 -4.28 9.41 71.24 0.67 -3.60 16 25 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 26 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 28 H 0.17 1.82 6.28 -2.91 -0.02 1.80 16 29 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 30 H 0.14 3.31 6.80 -2.91 -0.02 3.29 16 31 H 0.07 2.04 7.27 -2.38 -0.02 2.03 16 32 H 0.07 2.62 7.10 -2.39 -0.02 2.60 16 33 H 0.07 2.25 6.48 -2.39 -0.02 2.23 16 34 H 0.05 2.19 7.67 -2.38 -0.02 2.18 16 35 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 37 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 38 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.05 2.43 5.53 -2.39 -0.01 2.42 16 40 H 0.08 2.61 7.68 -2.39 -0.02 2.59 16 Total: -1.00 -74.32 323.30 5.42 -68.89 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 1.04 Total: 13.64 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: 5.34 Total: -4.58 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -2.04 Total: -82.12 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -0.95 Total: -41.47 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -74.32 5.42 -68.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597143659.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.335 kcal (2) G-P(sol) polarization free energy of solvation -74.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds