Wall clock time and date at job start Mon Mar 30 2020 02:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41389 * 126.57912 * 2 1 4 4 C 1.34515 * 106.83709 * 180.23347 * 3 2 1 5 5 O 1.34298 * 108.42370 * 359.77273 * 4 3 2 6 6 C 1.34305 * 109.47581 * 359.97438 * 5 4 3 7 7 C 1.50706 * 125.79184 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47235 * 270.02988 * 7 6 5 9 9 O 1.21283 * 120.00281 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99929 * 179.97438 * 8 7 6 11 11 C 1.46931 * 120.63029 * 359.97438 * 10 8 7 12 12 C 1.53200 * 108.77279 * 126.41292 * 11 10 8 13 13 C 1.53039 * 109.31160 * 54.63574 * 12 11 10 14 14 C 1.53046 * 109.52798 * 298.64112 * 13 12 11 15 15 H 1.08994 * 109.49581 * 301.40708 * 14 13 12 16 16 C 1.50700 * 109.49577 * 181.31010 * 14 13 12 17 17 H 1.07999 * 120.00091 * 0.02562 * 16 14 13 18 18 C 1.37881 * 119.99871 * 180.02562 * 16 14 13 19 19 N 1.31514 * 119.99744 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 120.00059 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47225 * 89.99840 * 20 18 16 22 22 H 1.48495 * 109.47370 * 209.99931 * 20 18 16 23 23 H 1.48502 * 109.47021 * 329.99933 * 20 18 16 24 24 C 1.46928 * 120.63179 * 180.02562 * 10 8 7 25 25 H 1.08991 * 109.47425 * 270.16513 * 1 2 3 26 26 H 1.09006 * 109.46873 * 30.16499 * 1 2 3 27 27 H 1.08993 * 109.46651 * 150.16134 * 1 2 3 28 28 H 1.08003 * 126.58110 * 0.02562 * 3 2 1 29 29 H 1.08004 * 125.78831 * 179.75146 * 4 3 2 30 30 H 1.09000 * 109.47219 * 150.02633 * 7 6 5 31 31 H 1.09001 * 109.46803 * 30.02754 * 7 6 5 32 32 H 1.08998 * 109.58425 * 6.63242 * 11 10 8 33 33 H 1.08995 * 109.70793 * 246.26860 * 11 10 8 34 34 H 1.08997 * 109.49280 * 294.68615 * 12 11 10 35 35 H 1.08996 * 109.52417 * 174.60413 * 12 11 10 36 36 H 1.09002 * 109.46050 * 58.65698 * 13 12 11 37 37 H 1.09004 * 109.46034 * 178.62914 * 13 12 11 38 38 H 0.97002 * 119.99462 * 179.97438 * 19 18 16 39 39 H 1.08999 * 109.58766 * 353.37877 * 24 10 8 40 40 H 1.08998 * 109.58326 * 113.79952 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1354 0.0000 4 6 3.6157 0.6810 -0.0052 5 8 3.5848 -0.6616 -0.0034 6 6 2.3087 -1.0801 0.0036 7 6 1.8521 -2.5164 0.0073 8 6 1.6933 -2.9966 -1.4123 9 8 1.9272 -2.2463 -2.3361 10 7 1.2912 -4.2598 -1.6554 11 6 1.0046 -5.1805 -0.5468 12 6 -0.4033 -5.7548 -0.7344 13 6 -0.5100 -6.3900 -2.1226 14 6 -0.2773 -5.3215 -3.1933 15 1 -1.0129 -4.5254 -3.0788 16 6 -0.4143 -5.9410 -4.5603 17 1 -0.6447 -6.9917 -4.6563 18 6 -0.2454 -5.1663 -5.6883 19 7 0.0348 -3.8867 -5.5713 20 14 -0.4159 -5.9340 -7.3827 21 1 -1.8286 -5.8371 -7.8301 22 1 0.4580 -5.2133 -8.3429 23 1 -0.0127 -7.3619 -7.3219 24 6 1.1323 -4.7427 -3.0339 25 1 -0.3634 0.0030 1.0276 26 1 -0.3633 0.8886 -0.5164 27 1 -0.3632 -0.8914 -0.5113 28 1 2.0367 2.1691 0.0004 29 1 4.5061 1.2923 -0.0105 30 1 0.8964 -2.5925 0.5257 31 1 2.5927 -3.1317 0.5182 32 1 1.0561 -4.6410 0.3989 33 1 1.7327 -5.9916 -0.5450 34 1 -1.1377 -4.9546 -0.6430 35 1 -0.5926 -6.5112 0.0273 36 1 0.2412 -7.1735 -2.2222 37 1 -1.5032 -6.8209 -2.2495 38 1 0.1539 -3.3418 -6.3649 39 1 1.2682 -3.9143 -3.7292 40 1 1.8712 -5.5178 -3.2369 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597902725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:49 Heat of formation + Delta-G solvation = -32.836145 kcal Electronic energy + Delta-G solvation = -22009.480375 eV Core-core repulsion = 18790.438152 eV Total energy + Delta-G solvation = -3219.042224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.41477 -39.37525 -36.70978 -34.08389 -33.42853 -32.01368 -31.57679 -29.81434 -28.64201 -26.20796 -25.02378 -24.11952 -21.83882 -21.32825 -20.25360 -19.30108 -18.20637 -16.95936 -16.78434 -16.12814 -15.55216 -15.09746 -14.94395 -14.56044 -14.01445 -13.70021 -13.35359 -13.19350 -12.94403 -12.72175 -12.57690 -12.54452 -12.41566 -12.15636 -11.91415 -11.68728 -11.25176 -10.99347 -10.91858 -10.50202 -10.40308 -10.23516 -9.89789 -9.42532 -9.31146 -9.11754 -8.92565 -8.42662 -8.12545 -7.74344 -5.99125 -4.08205 1.89081 2.73872 3.11209 3.26259 3.31268 3.38710 3.40785 3.80757 4.43357 4.74241 5.01312 5.04310 5.08802 5.24922 5.31107 5.32524 5.44106 5.49168 5.60462 5.65461 5.76315 5.92940 5.96584 6.03734 6.14820 6.22029 6.29856 6.35490 6.59035 6.66597 6.73465 6.84967 6.96775 7.15038 7.28639 7.33097 7.64478 7.87305 8.00034 8.24922 8.39165 8.86825 8.96599 9.57574 11.06034 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021248 B = 0.004919 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.436273 B = 5690.783544 C = 6398.116452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.168 4.168 3 C -0.210 4.210 4 C -0.044 4.044 5 O -0.172 6.172 6 C 0.012 3.988 7 C -0.062 4.062 8 C 0.505 3.495 9 O -0.525 6.525 10 N -0.606 5.606 11 C 0.107 3.893 12 C -0.134 4.134 13 C -0.111 4.111 14 C 0.040 3.960 15 H 0.029 0.971 16 C -0.522 4.522 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.880 5.880 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.113 3.887 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.145 0.855 29 H 0.199 0.801 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.051 0.949 38 H 0.263 0.737 39 H 0.122 0.878 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.138 4.082 15.014 15.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.169 4.169 3 C -0.229 4.229 4 C -0.112 4.112 5 O -0.068 6.068 6 C -0.038 4.038 7 C -0.102 4.102 8 C 0.291 3.709 9 O -0.401 6.401 10 N -0.340 5.340 11 C -0.017 4.017 12 C -0.172 4.172 13 C -0.149 4.149 14 C 0.021 3.979 15 H 0.047 0.953 16 C -0.561 4.561 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.007 4.007 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.162 0.838 29 H 0.216 0.784 30 H 0.134 0.866 31 H 0.122 0.878 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.140 0.860 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.551 4.450 14.380 15.466 hybrid contribution -0.135 -0.186 -0.955 0.982 sum 3.416 4.263 13.425 14.494 Atomic orbital electron populations 1.20166 0.89374 1.03080 1.01357 1.20130 0.97044 0.91962 1.07785 1.21645 0.92688 0.99591 1.08966 1.23858 0.99576 0.80702 1.07020 1.83968 1.28797 1.22704 1.71361 1.21387 0.81012 0.95224 1.06211 1.20197 1.03260 0.89242 0.97540 1.20168 0.78343 0.82306 0.90056 1.90751 1.49714 1.54048 1.45600 1.48497 1.65647 1.10605 1.09243 1.21668 0.97304 0.93408 0.89308 1.21951 0.96113 1.00070 0.99100 1.21628 1.00540 0.99193 0.93493 1.18969 0.92687 0.93334 0.92899 0.95332 1.21077 1.49163 0.95718 0.90115 0.92374 1.25057 0.94859 0.94820 0.99282 1.69892 1.47112 1.05210 1.29479 0.86598 0.77979 0.79303 0.84158 1.20676 1.21198 1.19900 1.22298 0.98617 1.00893 0.78911 0.91824 0.91549 0.91490 0.83752 0.78381 0.86561 0.87780 0.91188 0.91881 0.92105 0.92160 0.93174 0.93010 0.92649 0.85971 0.94015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.00 36.01 0.36 -0.75 16 2 C -0.17 -2.59 6.16 -104.74 -0.65 -3.24 16 3 C -0.21 -2.88 10.87 -39.70 -0.43 -3.31 16 4 C -0.04 -0.58 12.09 29.42 0.36 -0.23 16 5 O -0.17 -2.78 10.65 5.72 0.06 -2.72 16 6 C 0.01 0.20 5.82 -35.62 -0.21 -0.01 16 7 C -0.06 -0.91 4.20 -29.03 -0.12 -1.04 16 8 C 0.51 10.12 7.69 -10.99 -0.08 10.04 16 9 O -0.53 -13.21 15.45 5.56 0.09 -13.13 16 10 N -0.61 -11.93 2.97 -172.75 -0.51 -12.45 16 11 C 0.11 1.57 6.34 -3.70 -0.02 1.55 16 12 C -0.13 -2.05 6.08 -26.61 -0.16 -2.21 16 13 C -0.11 -2.15 5.11 -26.69 -0.14 -2.29 16 14 C 0.04 0.98 2.25 -91.64 -0.21 0.78 16 15 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 16 C -0.52 -14.11 8.56 -34.44 -0.29 -14.41 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 19 N -0.88 -25.83 11.40 55.43 0.63 -25.20 16 20 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 C 0.11 2.73 5.40 -3.70 -0.02 2.71 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.99 7.79 -51.93 -0.40 0.59 16 28 H 0.14 1.60 8.06 -52.48 -0.42 1.17 16 29 H 0.20 1.74 8.06 -52.48 -0.42 1.32 16 30 H 0.12 1.38 7.33 -51.93 -0.38 1.00 16 31 H 0.10 1.24 7.94 -51.93 -0.41 0.83 16 32 H 0.07 0.78 5.93 -51.93 -0.31 0.47 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 39 H 0.12 3.49 5.13 -51.93 -0.27 3.23 16 40 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 326.76 15.07 4.92 4.92 Total: -1.00 -33.36 326.76 -7.51 -40.87 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -5.96 Total: 2.16 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -1.71 Total: -10.76 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.12 Total: -37.64 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.15 Total: -15.85 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.36 -7.51 -40.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.032 kcal (2) G-P(sol) polarization free energy of solvation -33.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds