Wall clock time and date at job start Mon Mar 30 2020 02:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41389 * 126.57912 * 2 1 4 4 C 1.34515 * 106.83709 * 180.23347 * 3 2 1 5 5 O 1.34298 * 108.42370 * 359.77273 * 4 3 2 6 6 C 1.34305 * 109.47581 * 359.97438 * 5 4 3 7 7 C 1.50706 * 125.79184 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47235 * 270.02988 * 7 6 5 9 9 O 1.21283 * 120.00281 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99929 * 179.97438 * 8 7 6 11 11 C 1.46931 * 120.63029 * 359.97438 * 10 8 7 12 12 C 1.53200 * 108.77279 * 126.41292 * 11 10 8 13 13 C 1.53039 * 109.31160 * 54.63574 * 12 11 10 14 14 C 1.53046 * 109.52798 * 298.64112 * 13 12 11 15 15 H 1.08994 * 109.49581 * 301.40708 * 14 13 12 16 16 C 1.50700 * 109.49577 * 181.31010 * 14 13 12 17 17 H 1.07999 * 120.00091 * 0.02562 * 16 14 13 18 18 C 1.37881 * 119.99871 * 180.02562 * 16 14 13 19 19 N 1.31514 * 119.99744 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 120.00059 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47225 * 89.99840 * 20 18 16 22 22 H 1.48495 * 109.47370 * 209.99931 * 20 18 16 23 23 H 1.48502 * 109.47021 * 329.99933 * 20 18 16 24 24 C 1.46928 * 120.63179 * 180.02562 * 10 8 7 25 25 H 1.08991 * 109.47425 * 270.16513 * 1 2 3 26 26 H 1.09006 * 109.46873 * 30.16499 * 1 2 3 27 27 H 1.08993 * 109.46651 * 150.16134 * 1 2 3 28 28 H 1.08003 * 126.58110 * 0.02562 * 3 2 1 29 29 H 1.08004 * 125.78831 * 179.75146 * 4 3 2 30 30 H 1.09000 * 109.47219 * 150.02633 * 7 6 5 31 31 H 1.09001 * 109.46803 * 30.02754 * 7 6 5 32 32 H 1.08998 * 109.58425 * 6.63242 * 11 10 8 33 33 H 1.08995 * 109.70793 * 246.26860 * 11 10 8 34 34 H 1.08997 * 109.49280 * 294.68615 * 12 11 10 35 35 H 1.08996 * 109.52417 * 174.60413 * 12 11 10 36 36 H 1.09002 * 109.46050 * 58.65698 * 13 12 11 37 37 H 1.09004 * 109.46034 * 178.62914 * 13 12 11 38 38 H 0.97002 * 119.99462 * 179.97438 * 19 18 16 39 39 H 1.08999 * 109.58766 * 353.37877 * 24 10 8 40 40 H 1.08998 * 109.58326 * 113.79952 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1354 0.0000 4 6 3.6157 0.6810 -0.0052 5 8 3.5848 -0.6616 -0.0034 6 6 2.3087 -1.0801 0.0036 7 6 1.8521 -2.5164 0.0073 8 6 1.6933 -2.9966 -1.4123 9 8 1.9272 -2.2463 -2.3361 10 7 1.2912 -4.2598 -1.6554 11 6 1.0046 -5.1805 -0.5468 12 6 -0.4033 -5.7548 -0.7344 13 6 -0.5100 -6.3900 -2.1226 14 6 -0.2773 -5.3215 -3.1933 15 1 -1.0129 -4.5254 -3.0788 16 6 -0.4143 -5.9410 -4.5603 17 1 -0.6447 -6.9917 -4.6563 18 6 -0.2454 -5.1663 -5.6883 19 7 0.0348 -3.8867 -5.5713 20 14 -0.4159 -5.9340 -7.3827 21 1 -1.8286 -5.8371 -7.8301 22 1 0.4580 -5.2133 -8.3429 23 1 -0.0127 -7.3619 -7.3219 24 6 1.1323 -4.7427 -3.0339 25 1 -0.3634 0.0030 1.0276 26 1 -0.3633 0.8886 -0.5164 27 1 -0.3632 -0.8914 -0.5113 28 1 2.0367 2.1691 0.0004 29 1 4.5061 1.2923 -0.0105 30 1 0.8964 -2.5925 0.5257 31 1 2.5927 -3.1317 0.5182 32 1 1.0561 -4.6410 0.3989 33 1 1.7327 -5.9916 -0.5450 34 1 -1.1377 -4.9546 -0.6430 35 1 -0.5926 -6.5112 0.0273 36 1 0.2412 -7.1735 -2.2222 37 1 -1.5032 -6.8209 -2.2495 38 1 0.1539 -3.3418 -6.3649 39 1 1.2682 -3.9143 -3.7292 40 1 1.8712 -5.5178 -3.2369 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597902725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:48 Heat of formation + Delta-G solvation = -53.913139 kcal Electronic energy + Delta-G solvation = -22010.394342 eV Core-core repulsion = 18790.438152 eV Total energy + Delta-G solvation = -3219.956191 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.50644 -40.93631 -38.34349 -35.37755 -35.14744 -33.59596 -32.88276 -31.48885 -29.79640 -27.54561 -26.81230 -25.63977 -23.42325 -22.41866 -21.73057 -20.63036 -19.67773 -18.60224 -18.07558 -17.79664 -16.89788 -16.57558 -16.39426 -16.34441 -15.27967 -15.16235 -14.81373 -14.53868 -14.44315 -14.14892 -13.94840 -13.83758 -13.60644 -13.47846 -13.33886 -12.97330 -12.89220 -12.68411 -12.35739 -12.26706 -12.21165 -11.77841 -11.61825 -11.13134 -10.93658 -10.68128 -10.51454 -10.48818 -9.39563 -9.24520 -8.11681 -6.28887 0.77017 1.39060 1.40251 1.50897 1.65558 1.72463 2.08947 2.35665 2.43750 3.16808 3.60522 3.81281 3.99308 4.07079 4.11000 4.20333 4.27852 4.37472 4.39770 4.62615 4.63330 4.76792 4.78877 4.83353 4.87680 4.90961 4.97414 5.13039 5.16521 5.27922 5.30993 5.33254 5.38834 5.55107 5.65935 5.69261 5.90886 6.00776 6.24069 6.33243 6.68045 6.84728 7.34022 7.41952 8.91349 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021248 B = 0.004919 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.436273 B = 5690.783544 C = 6398.116452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.183 4.183 3 C -0.227 4.227 4 C -0.041 4.041 5 O -0.192 6.192 6 C -0.021 4.021 7 C -0.048 4.048 8 C 0.497 3.503 9 O -0.591 6.591 10 N -0.609 5.609 11 C 0.099 3.901 12 C -0.127 4.127 13 C -0.106 4.106 14 C 0.039 3.961 15 H -0.013 1.013 16 C -0.536 4.536 17 H 0.062 0.938 18 C 0.009 3.991 19 N -0.916 5.916 20 Si 0.957 3.043 21 H -0.274 1.274 22 H -0.289 1.289 23 H -0.261 1.261 24 C 0.125 3.875 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.168 0.832 29 H 0.239 0.761 30 H 0.149 0.851 31 H 0.138 0.862 32 H 0.118 0.882 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.106 0.894 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.258 0.742 39 H 0.072 0.928 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.252 3.144 17.579 18.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.184 4.184 3 C -0.246 4.246 4 C -0.108 4.108 5 O -0.089 6.089 6 C -0.071 4.071 7 C -0.087 4.087 8 C 0.286 3.714 9 O -0.471 6.471 10 N -0.341 5.341 11 C -0.022 4.022 12 C -0.165 4.165 13 C -0.144 4.144 14 C 0.020 3.980 15 H 0.005 0.995 16 C -0.575 4.575 17 H 0.080 0.920 18 C -0.190 4.190 19 N -0.555 5.555 20 Si 0.782 3.218 21 H -0.200 1.200 22 H -0.215 1.215 23 H -0.185 1.185 24 C 0.003 3.997 25 H 0.111 0.889 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.185 0.815 29 H 0.255 0.745 30 H 0.166 0.834 31 H 0.156 0.844 32 H 0.136 0.864 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.125 0.875 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.646 3.464 16.997 17.725 hybrid contribution -0.168 0.152 -1.752 1.766 sum 3.477 3.617 15.245 16.049 Atomic orbital electron populations 1.20198 0.88459 1.02179 1.02960 1.20587 0.98080 0.92675 1.07071 1.22030 0.92799 1.00438 1.09348 1.24730 1.01082 0.79988 1.04986 1.83950 1.29031 1.24138 1.71777 1.21701 0.81309 0.96124 1.08002 1.20211 1.05884 0.89058 0.93516 1.21193 0.76712 0.81590 0.91943 1.90715 1.52456 1.55763 1.48185 1.48523 1.65228 1.11615 1.08736 1.22108 0.97315 0.93597 0.89221 1.21925 0.96368 1.00852 0.97342 1.21524 1.00636 0.97739 0.94509 1.18902 0.91594 0.93592 0.93954 0.99524 1.21554 1.48262 0.95941 0.91721 0.91970 1.25904 0.94685 0.95124 1.03322 1.70104 1.48607 1.06763 1.29984 0.85574 0.77982 0.78876 0.79373 1.20004 1.21537 1.18501 1.21673 0.98150 0.98665 0.81252 0.88863 0.91314 0.93499 0.81480 0.74502 0.83383 0.84369 0.86446 0.90037 0.92737 0.87546 0.92574 0.93048 0.93281 0.90935 0.94786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.11 10.00 71.24 0.71 -1.40 16 2 C -0.18 -5.49 6.16 -19.94 -0.12 -5.61 16 3 C -0.23 -5.93 10.87 22.19 0.24 -5.69 16 4 C -0.04 -1.02 12.09 66.97 0.81 -0.21 16 5 O -0.19 -6.03 10.65 -2.45 -0.03 -6.06 16 6 C -0.02 -0.68 5.82 24.83 0.14 -0.53 16 7 C -0.05 -1.29 4.20 29.10 0.12 -1.17 16 8 C 0.50 20.05 7.69 87.66 0.67 20.72 16 9 O -0.59 -31.31 15.45 -3.04 -0.05 -31.36 16 10 N -0.61 -23.83 2.97 -818.86 -2.43 -26.26 16 11 C 0.10 2.56 6.34 86.36 0.55 3.11 16 12 C -0.13 -3.46 6.08 30.67 0.19 -3.28 16 13 C -0.11 -4.00 5.11 30.62 0.16 -3.85 16 14 C 0.04 1.96 2.25 -11.46 -0.03 1.93 16 15 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 16 C -0.54 -29.78 8.56 25.60 0.22 -29.56 16 17 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 18 C 0.01 0.51 5.30 84.66 0.45 0.96 16 19 N -0.92 -56.79 11.40 21.45 0.24 -56.55 16 20 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 21 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 24 C 0.13 6.31 5.40 86.37 0.47 6.77 16 25 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 27 H 0.05 1.38 7.79 -2.39 -0.02 1.37 16 28 H 0.17 3.39 8.06 -2.91 -0.02 3.37 16 29 H 0.24 3.53 8.06 -2.91 -0.02 3.51 16 30 H 0.15 3.00 7.33 -2.39 -0.02 2.99 16 31 H 0.14 2.77 7.94 -2.39 -0.02 2.75 16 32 H 0.12 1.98 5.93 -2.39 -0.01 1.97 16 33 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 39 H 0.07 4.44 5.13 -2.39 -0.01 4.43 16 40 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -80.00 326.76 5.37 -74.63 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 1.02 Total: 16.54 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 4.58 Total: -17.80 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -2.19 Total: -82.81 kcal Atomic # 8 Polarization: -37.34 SS G_CDS: -0.07 Total: -37.42 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -80.00 5.37 -74.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.715 kcal (2) G-P(sol) polarization free energy of solvation -79.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds