Wall clock time and date at job start Mon Mar 30 2020 02:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41391 * 126.57975 * 2 1 4 4 C 1.34507 * 106.84020 * 180.23684 * 3 2 1 5 5 O 1.34303 * 108.42256 * 359.77007 * 4 3 2 6 6 C 1.34299 * 109.47440 * 359.97438 * 5 4 3 7 7 C 1.50709 * 125.78772 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47044 * 270.02662 * 7 6 5 9 9 O 1.21284 * 120.00087 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00162 * 180.02562 * 8 7 6 11 11 C 1.46933 * 120.62602 * 359.97327 * 10 8 7 12 12 C 1.53188 * 108.77495 * 233.63137 * 11 10 8 13 13 C 1.53034 * 109.31404 * 305.36890 * 12 11 10 14 14 C 1.53346 * 109.61010 * 61.37429 * 13 12 11 15 15 H 1.09002 * 109.47277 * 58.54691 * 14 13 12 16 16 C 1.50698 * 109.68835 * 178.74685 * 14 13 12 17 17 H 1.08009 * 119.99739 * 359.75029 * 16 14 13 18 18 C 1.37876 * 120.00334 * 179.75168 * 16 14 13 19 19 N 1.31517 * 119.99819 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 120.00035 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47425 * 59.99738 * 20 18 16 22 22 H 1.48504 * 109.47195 * 180.02562 * 20 18 16 23 23 H 1.48510 * 109.47050 * 299.99885 * 20 18 16 24 24 C 1.46919 * 120.63395 * 180.02562 * 10 8 7 25 25 H 1.08998 * 109.47321 * 270.16586 * 1 2 3 26 26 H 1.09001 * 109.47359 * 30.16223 * 1 2 3 27 27 H 1.08992 * 109.47035 * 150.16170 * 1 2 3 28 28 H 1.08002 * 126.57944 * 359.97438 * 3 2 1 29 29 H 1.07997 * 125.79136 * 179.78969 * 4 3 2 30 30 H 1.09000 * 109.46530 * 150.03012 * 7 6 5 31 31 H 1.08993 * 109.46840 * 30.02817 * 7 6 5 32 32 H 1.08994 * 109.58580 * 353.42544 * 11 10 8 33 33 H 1.09006 * 109.57831 * 113.70037 * 11 10 8 34 34 H 1.08994 * 109.49494 * 65.32533 * 12 11 10 35 35 H 1.09000 * 109.49460 * 185.41816 * 12 11 10 36 36 H 1.08999 * 109.45836 * 181.38851 * 13 12 11 37 37 H 1.09000 * 109.46169 * 301.34220 * 13 12 11 38 38 H 0.96996 * 119.99912 * 179.97438 * 19 18 16 39 39 H 1.09002 * 109.58751 * 246.15665 * 24 10 8 40 40 H 1.08996 * 109.58750 * 6.43850 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1354 0.0000 4 6 3.6156 0.6811 -0.0053 5 8 3.5848 -0.6616 -0.0034 6 6 2.3087 -1.0801 0.0037 7 6 1.8522 -2.5164 0.0073 8 6 1.6933 -2.9965 -1.4122 9 8 1.9271 -2.2462 -2.3360 10 7 1.2902 -4.2595 -1.6553 11 6 1.0027 -5.1800 -0.5467 12 6 1.8199 -6.4605 -0.7445 13 6 1.5292 -7.0372 -2.1319 14 6 1.9469 -6.0269 -3.2072 15 1 3.0080 -5.8009 -3.1008 16 6 1.6899 -6.6054 -4.5747 17 1 1.2738 -7.5974 -4.6719 18 6 1.9859 -5.8685 -5.7018 19 7 2.4930 -4.6608 -5.5834 20 14 1.6665 -6.5854 -7.3969 21 1 0.2211 -6.8942 -7.5395 22 1 2.0677 -5.6013 -8.4342 23 1 2.4576 -7.8310 -7.5647 24 6 1.1312 -4.7423 -3.0338 25 1 -0.3634 0.0030 1.0276 26 1 -0.3634 0.8885 -0.5163 27 1 -0.3633 -0.8914 -0.5113 28 1 2.0367 2.1691 -0.0004 29 1 4.5060 1.2923 -0.0100 30 1 0.8965 -2.5924 0.5258 31 1 2.5928 -3.1316 0.5182 32 1 1.2796 -4.7120 0.3979 33 1 -0.0605 -5.4201 -0.5378 34 1 2.8821 -6.2306 -0.6613 35 1 1.5441 -7.1894 0.0176 36 1 2.0907 -7.9618 -2.2657 37 1 0.4628 -7.2438 -2.2232 38 1 2.7016 -4.1426 -6.3764 39 1 0.0790 -4.9488 -3.2295 40 1 1.4905 -3.9847 -3.7301 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597902727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:51 Heat of formation + Delta-G solvation = -32.720583 kcal Electronic energy + Delta-G solvation = -21958.386927 eV Core-core repulsion = 18739.349714 eV Total energy + Delta-G solvation = -3219.037213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.41906 -39.37137 -36.69976 -34.10576 -33.42426 -32.01233 -31.57223 -29.81394 -28.67265 -26.22377 -25.02580 -24.11682 -21.83104 -21.34649 -20.24606 -19.32250 -18.19657 -16.95088 -16.80517 -16.12182 -15.55025 -15.07997 -14.99150 -14.51995 -13.97408 -13.70327 -13.49695 -13.13579 -13.03834 -12.70803 -12.56519 -12.54043 -12.40759 -12.21038 -11.90561 -11.69224 -11.29430 -10.99176 -10.89296 -10.52812 -10.39591 -10.23319 -9.89668 -9.44016 -9.31206 -9.10550 -8.92734 -8.42250 -8.13588 -7.74203 -5.98460 -4.07836 1.89127 2.72236 3.12487 3.24893 3.32814 3.38619 3.39757 3.81566 4.43576 4.73323 5.00667 5.01442 5.06249 5.27844 5.30784 5.31720 5.42278 5.49203 5.56333 5.65374 5.69668 5.88905 5.95283 5.99477 6.14461 6.17561 6.30262 6.34074 6.59728 6.66704 6.71814 6.85039 6.96655 7.14924 7.29030 7.33168 7.64688 7.87966 8.00495 8.24969 8.39673 8.86795 8.96815 9.57853 11.06653 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021405 B = 0.004835 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.792727 B = 5790.160475 C = 6510.925937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.172 4.172 3 C -0.211 4.211 4 C -0.042 4.042 5 O -0.170 6.170 6 C 0.015 3.985 7 C -0.063 4.063 8 C 0.506 3.494 9 O -0.525 6.525 10 N -0.606 5.606 11 C 0.107 3.893 12 C -0.134 4.134 13 C -0.111 4.111 14 C 0.040 3.960 15 H 0.028 0.972 16 C -0.522 4.522 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.880 5.880 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.112 3.888 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.144 0.856 29 H 0.200 0.800 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.264 0.736 39 H 0.042 0.958 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.655 5.926 15.035 16.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.173 4.173 3 C -0.230 4.230 4 C -0.109 4.109 5 O -0.066 6.066 6 C -0.036 4.036 7 C -0.103 4.103 8 C 0.291 3.709 9 O -0.401 6.401 10 N -0.340 5.340 11 C -0.017 4.017 12 C -0.172 4.172 13 C -0.149 4.149 14 C 0.021 3.979 15 H 0.046 0.954 16 C -0.561 4.561 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.008 4.008 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.162 0.838 29 H 0.216 0.784 30 H 0.133 0.867 31 H 0.124 0.876 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.227 6.294 14.399 15.871 hybrid contribution -0.171 -0.184 -0.945 0.978 sum -2.398 6.110 13.453 14.969 Atomic orbital electron populations 1.20143 0.89496 1.02791 1.01352 1.20099 0.96945 0.91991 1.08297 1.21625 0.92685 0.99536 1.09195 1.23877 0.99602 0.80714 1.06744 1.83992 1.28763 1.22694 1.71147 1.21393 0.81069 0.95198 1.05924 1.20202 1.03255 0.89302 0.97561 1.20165 0.78233 0.82426 0.90042 1.90752 1.49465 1.54287 1.45596 1.48496 1.65966 1.10287 1.09240 1.21674 0.99490 0.91203 0.89317 1.21942 1.00086 0.96147 0.99072 1.21674 1.00288 0.99419 0.93512 1.19011 0.95854 0.90193 0.92812 0.95370 1.21029 1.43417 1.01562 0.90095 0.92415 1.25056 0.94771 0.94905 0.99279 1.69880 1.42328 1.09869 1.29640 0.86651 0.78653 0.78795 0.83865 1.20234 1.21264 1.20276 1.22280 0.98790 1.00789 0.78898 0.91831 0.91622 0.91727 0.83774 0.78360 0.86667 0.87635 0.91190 0.91855 0.92103 0.92145 0.93032 0.93165 0.92577 0.94005 0.85963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 9.99 36.00 0.36 -0.64 16 2 C -0.17 -2.58 6.16 -104.74 -0.65 -3.22 16 3 C -0.21 -2.86 10.87 -39.70 -0.43 -3.29 16 4 C -0.04 -0.56 12.09 29.41 0.36 -0.20 16 5 O -0.17 -2.83 10.65 5.72 0.06 -2.76 16 6 C 0.01 0.24 5.81 -35.62 -0.21 0.03 16 7 C -0.06 -0.93 4.20 -29.03 -0.12 -1.05 16 8 C 0.51 10.13 7.69 -10.98 -0.08 10.04 16 9 O -0.53 -13.21 15.45 5.55 0.09 -13.13 16 10 N -0.61 -11.94 2.97 -172.79 -0.51 -12.45 16 11 C 0.11 1.57 6.34 -3.71 -0.02 1.55 16 12 C -0.13 -2.08 6.08 -26.62 -0.16 -2.25 16 13 C -0.11 -2.18 5.13 -26.53 -0.14 -2.31 16 14 C 0.04 1.00 2.26 -91.51 -0.21 0.79 16 15 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 16 C -0.52 -14.18 8.57 -34.44 -0.30 -14.48 16 17 H 0.06 1.53 7.75 -52.48 -0.41 1.12 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 19 N -0.88 -25.98 11.39 55.43 0.63 -25.35 16 20 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.11 2.72 5.39 -3.73 -0.02 2.70 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.85 7.79 -51.93 -0.40 0.44 16 28 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.20 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.12 1.29 7.58 -51.93 -0.39 0.90 16 31 H 0.11 1.33 7.69 -51.93 -0.40 0.93 16 32 H 0.07 0.78 5.93 -51.93 -0.31 0.48 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.12 3.50 5.11 -51.93 -0.27 3.24 16 LS Contribution 326.78 15.07 4.92 4.92 Total: -1.00 -33.58 326.78 -7.51 -41.09 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.96 Total: 2.00 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -1.71 Total: -10.67 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.12 Total: -37.81 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.15 Total: -15.89 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.58 -7.51 -41.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.372 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds