Wall clock time and date at job start Mon Mar 30 2020 02:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41391 * 126.57975 * 2 1 4 4 C 1.34507 * 106.84020 * 180.23684 * 3 2 1 5 5 O 1.34303 * 108.42256 * 359.77007 * 4 3 2 6 6 C 1.34299 * 109.47440 * 359.97438 * 5 4 3 7 7 C 1.50709 * 125.78772 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47044 * 270.02662 * 7 6 5 9 9 O 1.21284 * 120.00087 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00162 * 180.02562 * 8 7 6 11 11 C 1.46933 * 120.62602 * 359.97327 * 10 8 7 12 12 C 1.53188 * 108.77495 * 233.63137 * 11 10 8 13 13 C 1.53034 * 109.31404 * 305.36890 * 12 11 10 14 14 C 1.53346 * 109.61010 * 61.37429 * 13 12 11 15 15 H 1.09002 * 109.47277 * 58.54691 * 14 13 12 16 16 C 1.50698 * 109.68835 * 178.74685 * 14 13 12 17 17 H 1.08009 * 119.99739 * 359.75029 * 16 14 13 18 18 C 1.37876 * 120.00334 * 179.75168 * 16 14 13 19 19 N 1.31517 * 119.99819 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 120.00035 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47425 * 59.99738 * 20 18 16 22 22 H 1.48504 * 109.47195 * 180.02562 * 20 18 16 23 23 H 1.48510 * 109.47050 * 299.99885 * 20 18 16 24 24 C 1.46919 * 120.63395 * 180.02562 * 10 8 7 25 25 H 1.08998 * 109.47321 * 270.16586 * 1 2 3 26 26 H 1.09001 * 109.47359 * 30.16223 * 1 2 3 27 27 H 1.08992 * 109.47035 * 150.16170 * 1 2 3 28 28 H 1.08002 * 126.57944 * 359.97438 * 3 2 1 29 29 H 1.07997 * 125.79136 * 179.78969 * 4 3 2 30 30 H 1.09000 * 109.46530 * 150.03012 * 7 6 5 31 31 H 1.08993 * 109.46840 * 30.02817 * 7 6 5 32 32 H 1.08994 * 109.58580 * 353.42544 * 11 10 8 33 33 H 1.09006 * 109.57831 * 113.70037 * 11 10 8 34 34 H 1.08994 * 109.49494 * 65.32533 * 12 11 10 35 35 H 1.09000 * 109.49460 * 185.41816 * 12 11 10 36 36 H 1.08999 * 109.45836 * 181.38851 * 13 12 11 37 37 H 1.09000 * 109.46169 * 301.34220 * 13 12 11 38 38 H 0.96996 * 119.99912 * 179.97438 * 19 18 16 39 39 H 1.09002 * 109.58751 * 246.15665 * 24 10 8 40 40 H 1.08996 * 109.58750 * 6.43850 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1354 0.0000 4 6 3.6156 0.6811 -0.0053 5 8 3.5848 -0.6616 -0.0034 6 6 2.3087 -1.0801 0.0037 7 6 1.8522 -2.5164 0.0073 8 6 1.6933 -2.9965 -1.4122 9 8 1.9271 -2.2462 -2.3360 10 7 1.2902 -4.2595 -1.6553 11 6 1.0027 -5.1800 -0.5467 12 6 1.8199 -6.4605 -0.7445 13 6 1.5292 -7.0372 -2.1319 14 6 1.9469 -6.0269 -3.2072 15 1 3.0080 -5.8009 -3.1008 16 6 1.6899 -6.6054 -4.5747 17 1 1.2738 -7.5974 -4.6719 18 6 1.9859 -5.8685 -5.7018 19 7 2.4930 -4.6608 -5.5834 20 14 1.6665 -6.5854 -7.3969 21 1 0.2211 -6.8942 -7.5395 22 1 2.0677 -5.6013 -8.4342 23 1 2.4576 -7.8310 -7.5647 24 6 1.1312 -4.7423 -3.0338 25 1 -0.3634 0.0030 1.0276 26 1 -0.3634 0.8885 -0.5163 27 1 -0.3633 -0.8914 -0.5113 28 1 2.0367 2.1691 -0.0004 29 1 4.5060 1.2923 -0.0100 30 1 0.8965 -2.5924 0.5258 31 1 2.5928 -3.1316 0.5182 32 1 1.2796 -4.7120 0.3979 33 1 -0.0605 -5.4201 -0.5378 34 1 2.8821 -6.2306 -0.6613 35 1 1.5441 -7.1894 0.0176 36 1 2.0907 -7.9618 -2.2657 37 1 0.4628 -7.2438 -2.2232 38 1 2.7016 -4.1426 -6.3764 39 1 0.0790 -4.9488 -3.2295 40 1 1.4905 -3.9847 -3.7301 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597902727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:51 Heat of formation + Delta-G solvation = -54.073535 kcal Electronic energy + Delta-G solvation = -21959.312860 eV Core-core repulsion = 18739.349714 eV Total energy + Delta-G solvation = -3219.963146 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.50864 -40.93303 -38.33738 -35.37949 -35.14650 -33.59308 -32.88092 -31.49408 -29.78693 -27.53713 -26.81588 -25.63598 -23.42736 -22.43790 -21.71339 -20.64759 -19.66913 -18.60285 -18.08271 -17.80072 -16.91170 -16.56551 -16.41001 -16.33337 -15.24795 -15.11004 -14.86999 -14.69772 -14.26066 -14.18318 -13.95988 -13.80645 -13.60272 -13.47832 -13.32054 -12.97329 -12.85872 -12.70731 -12.34384 -12.27281 -12.23888 -11.78022 -11.62699 -11.12974 -10.94181 -10.68802 -10.51293 -10.48421 -9.39544 -9.24390 -8.11784 -6.29524 0.77198 1.39516 1.41199 1.49605 1.65880 1.72480 2.09531 2.36727 2.44031 3.16402 3.60207 3.80922 3.99481 4.07517 4.12283 4.19837 4.28503 4.35660 4.39631 4.62826 4.63790 4.76795 4.81088 4.83007 4.88219 4.89797 4.99391 5.12209 5.16720 5.26973 5.30366 5.33488 5.38225 5.54475 5.65626 5.71052 5.90269 6.00513 6.25000 6.32592 6.68114 6.84066 7.34102 7.41476 8.91121 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021405 B = 0.004835 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.792727 B = 5790.160475 C = 6510.925937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.180 4.180 3 C -0.226 4.226 4 C -0.045 4.045 5 O -0.197 6.197 6 C -0.023 4.023 7 C -0.048 4.048 8 C 0.497 3.503 9 O -0.591 6.591 10 N -0.609 5.609 11 C 0.099 3.901 12 C -0.128 4.128 13 C -0.106 4.106 14 C 0.038 3.962 15 H -0.017 1.017 16 C -0.537 4.537 17 H 0.063 0.937 18 C 0.008 3.992 19 N -0.917 5.917 20 Si 0.958 3.042 21 H -0.265 1.265 22 H -0.290 1.290 23 H -0.267 1.267 24 C 0.125 3.875 25 H 0.092 0.908 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.170 0.830 29 H 0.236 0.764 30 H 0.156 0.844 31 H 0.131 0.869 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.107 0.893 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.258 0.742 39 H 0.036 0.964 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.839 5.293 17.537 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.182 4.182 3 C -0.245 4.245 4 C -0.112 4.112 5 O -0.094 6.094 6 C -0.073 4.073 7 C -0.087 4.087 8 C 0.286 3.714 9 O -0.471 6.471 10 N -0.341 5.341 11 C -0.022 4.022 12 C -0.166 4.166 13 C -0.144 4.144 14 C 0.018 3.982 15 H 0.001 0.999 16 C -0.575 4.575 17 H 0.081 0.919 18 C -0.191 4.191 19 N -0.556 5.556 20 Si 0.783 3.217 21 H -0.190 1.190 22 H -0.216 1.216 23 H -0.192 1.192 24 C 0.003 3.997 25 H 0.111 0.889 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.187 0.813 29 H 0.252 0.748 30 H 0.174 0.826 31 H 0.148 0.852 32 H 0.135 0.865 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.125 0.875 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.431 5.614 16.954 18.186 hybrid contribution 0.220 0.053 -1.719 1.734 sum -3.211 5.667 15.235 16.569 Atomic orbital electron populations 1.20214 0.87919 1.02459 1.03096 1.20606 0.98337 0.92290 1.06950 1.22038 0.92643 1.00553 1.09219 1.24723 1.01253 0.79977 1.05199 1.83967 1.29386 1.24246 1.71768 1.21754 0.81280 0.96228 1.08065 1.20224 1.06009 0.88964 0.93511 1.21197 0.76554 0.81757 0.91939 1.90715 1.52149 1.56059 1.48184 1.48524 1.65555 1.11295 1.08733 1.22116 1.00816 0.90085 0.89185 1.21924 0.99779 0.97472 0.97424 1.21569 1.00537 0.97873 0.94409 1.18955 0.93244 0.91973 0.93984 0.99910 1.21513 1.42636 1.01727 0.91655 0.91895 1.25919 0.94655 0.95091 1.03404 1.70102 1.43932 1.11401 1.30133 0.85611 0.79063 0.78060 0.78962 1.19017 1.21621 1.19229 1.21649 0.97742 0.99109 0.81232 0.88910 0.91111 0.92904 0.81296 0.74823 0.82641 0.85157 0.86521 0.89642 0.93152 0.87470 0.93174 0.92312 0.93258 0.94518 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.84 9.99 71.24 0.71 -1.12 16 2 C -0.18 -5.20 6.16 -19.94 -0.12 -5.32 16 3 C -0.23 -5.80 10.87 22.19 0.24 -5.56 16 4 C -0.04 -1.15 12.09 66.97 0.81 -0.34 16 5 O -0.20 -6.48 10.65 -2.45 -0.03 -6.50 16 6 C -0.02 -0.74 5.81 24.83 0.14 -0.60 16 7 C -0.05 -1.31 4.20 29.10 0.12 -1.19 16 8 C 0.50 20.06 7.69 87.66 0.67 20.73 16 9 O -0.59 -31.33 15.45 -3.04 -0.05 -31.37 16 10 N -0.61 -23.83 2.97 -818.98 -2.44 -26.26 16 11 C 0.10 2.57 6.34 86.36 0.55 3.12 16 12 C -0.13 -3.57 6.08 30.67 0.19 -3.38 16 13 C -0.11 -4.03 5.13 30.72 0.16 -3.87 16 14 C 0.04 1.92 2.26 -11.37 -0.03 1.89 16 15 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 16 C -0.54 -29.95 8.57 25.60 0.22 -29.73 16 17 H 0.06 3.35 7.75 -2.91 -0.02 3.33 16 18 C 0.01 0.49 5.30 84.65 0.45 0.94 16 19 N -0.92 -57.23 11.39 21.45 0.24 -56.99 16 20 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 C 0.13 6.31 5.39 86.35 0.47 6.77 16 25 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.05 1.32 7.79 -2.39 -0.02 1.30 16 28 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 29 H 0.24 3.80 8.06 -2.91 -0.02 3.78 16 30 H 0.16 2.87 7.58 -2.39 -0.02 2.85 16 31 H 0.13 2.87 7.69 -2.39 -0.02 2.85 16 32 H 0.12 1.98 5.93 -2.39 -0.01 1.97 16 33 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 39 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.07 4.43 5.11 -2.39 -0.01 4.42 16 Total: -1.00 -80.78 326.78 5.37 -75.41 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 1.02 Total: 16.45 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: 4.58 Total: -17.66 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -2.19 Total: -83.25 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -0.07 Total: -37.88 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -80.78 5.37 -75.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.337 kcal (2) G-P(sol) polarization free energy of solvation -80.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds