Wall clock time and date at job start Mon Mar 30 2020 02:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47252 * 2 1 4 4 N 1.46905 * 109.46947 * 304.99800 * 3 2 1 5 5 C 1.46901 * 110.99870 * 300.00190 * 4 3 2 6 6 C 1.53004 * 109.46916 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.46807 * 179.97438 * 6 5 4 8 8 H 1.07995 * 120.00107 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99714 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99944 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99765 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47371 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46838 * 120.00669 * 11 9 7 14 14 H 1.48505 * 109.46977 * 239.99980 * 11 9 7 15 15 C 1.50697 * 109.47213 * 184.99847 * 3 2 1 16 16 O 1.20827 * 120.00461 * 334.99868 * 15 3 2 17 17 O 1.34235 * 120.00187 * 154.99934 * 15 3 2 18 18 C 1.50697 * 109.47371 * 64.99777 * 3 2 1 19 19 C 1.38238 * 119.99909 * 29.72480 * 18 3 2 20 20 C 1.38230 * 119.99823 * 179.76661 * 19 18 3 21 21 C 1.38239 * 120.00078 * 0.50921 * 20 19 18 22 22 C 1.38232 * 119.99957 * 359.74636 * 21 20 19 23 23 C 1.38230 * 120.00163 * 210.00257 * 18 3 2 24 24 H 1.09000 * 109.47135 * 60.00406 * 1 2 3 25 25 H 1.09002 * 109.47426 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47612 * 300.00374 * 1 2 3 27 27 H 1.09001 * 109.47612 * 239.99626 * 2 1 3 28 28 H 1.09000 * 109.47135 * 119.99594 * 2 1 3 29 29 H 1.00901 * 110.99869 * 176.04901 * 4 3 2 30 30 H 1.09004 * 109.47031 * 299.99620 * 5 4 3 31 31 H 1.08995 * 109.47111 * 59.99900 * 5 4 3 32 32 H 1.08995 * 109.46615 * 299.99641 * 6 5 4 33 33 H 1.08996 * 109.46939 * 60.00272 * 6 5 4 34 34 H 0.97007 * 120.00038 * 179.97438 * 10 9 7 35 35 H 0.96699 * 117.00386 * 180.02562 * 17 15 3 36 36 H 1.08002 * 119.99864 * 0.02562 * 19 18 3 37 37 H 1.08005 * 120.00209 * 180.23420 * 20 19 18 38 38 H 1.08008 * 120.00025 * 179.72376 * 21 20 19 39 39 H 1.07997 * 119.99688 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.00381 * 0.02562 * 23 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4542 2.1689 -1.1346 5 6 1.8225 1.5391 -2.4096 6 6 1.1960 2.3223 -3.5650 7 6 1.5743 1.6764 -4.8731 8 1 2.1994 0.7958 -4.8796 9 6 1.1223 2.2099 -6.0614 10 7 0.3616 3.2826 -6.0534 11 14 1.5918 1.4098 -7.6828 12 1 2.4488 0.2258 -7.4206 13 1 0.3626 0.9822 -8.3979 14 1 2.3368 2.3853 -8.5187 15 6 3.5418 1.4443 -0.1238 16 8 4.1792 0.4843 0.2396 17 8 4.1717 2.5125 -0.6378 18 6 1.6413 2.1163 1.2876 19 6 1.5008 1.3707 2.4432 20 6 1.1398 1.9896 3.6253 21 6 0.9090 3.3524 3.6497 22 6 1.0444 4.0971 2.4930 23 6 1.4105 3.4790 1.3120 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.7247 3.1409 -1.1200 30 1 2.9073 1.5411 -2.5159 31 1 1.4576 0.5121 -2.4262 32 1 0.1112 2.3206 -3.4589 33 1 1.5613 3.3491 -3.5482 34 1 0.0439 3.6582 -6.8895 35 1 5.1358 2.4670 -0.6975 36 1 1.6771 0.3054 2.4233 37 1 1.0337 1.4077 4.5291 38 1 0.6226 3.8352 4.5725 39 1 0.8637 5.1616 2.5120 40 1 1.5155 4.0608 0.4081 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736918060.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:09 Heat of formation + Delta-G solvation = -70.007051 kcal Electronic energy + Delta-G solvation = -22020.421885 eV Core-core repulsion = 18799.767810 eV Total energy + Delta-G solvation = -3220.654075 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.95803 -39.08776 -36.79708 -36.07057 -33.69406 -32.20982 -31.19387 -30.44591 -29.00113 -26.51006 -24.17110 -22.96460 -22.61705 -22.15505 -20.64425 -19.31709 -17.91684 -17.41436 -16.96230 -16.30345 -15.69047 -15.16351 -15.02146 -14.59854 -14.41614 -13.94701 -13.77542 -13.27431 -13.24118 -12.89846 -12.62938 -12.33875 -12.11366 -11.70170 -11.61580 -11.41379 -11.29676 -11.12815 -10.99911 -10.81791 -10.59526 -10.55861 -10.46452 -9.98500 -9.46025 -9.17920 -8.93546 -8.81490 -8.38414 -8.09425 -6.02117 -4.04577 1.21397 1.38089 2.29506 3.08430 3.30089 3.37781 3.41812 3.79670 4.29242 4.48730 4.65058 4.74930 4.94551 5.01534 5.08992 5.28831 5.34424 5.39036 5.51061 5.59845 5.69537 5.86368 5.96035 5.97481 6.13712 6.23838 6.26922 6.32508 6.43444 6.47481 6.53867 6.56416 6.70697 6.90110 6.93073 7.23367 7.61962 7.69222 7.84426 7.96914 8.02349 8.39330 9.02225 9.59471 11.09219 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024033 B = 0.004474 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.788877 B = 6256.682985 C = 6482.304566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 C 0.173 3.827 4 N -0.658 5.658 5 C 0.057 3.943 6 C 0.029 3.971 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.059 3.941 10 N -0.892 5.892 11 Si 0.891 3.109 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.459 3.541 16 O -0.519 6.519 17 O -0.510 6.510 18 C -0.071 4.071 19 C -0.105 4.105 20 C -0.125 4.125 21 C -0.119 4.119 22 C -0.121 4.121 23 C -0.091 4.091 24 H 0.078 0.922 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.348 0.652 30 H 0.020 0.980 31 H 0.066 0.934 32 H 0.027 0.973 33 H 0.016 0.984 34 H 0.260 0.740 35 H 0.405 0.595 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.321 -0.695 18.385 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.138 4.138 3 C 0.079 3.921 4 N -0.291 5.291 5 C -0.070 4.070 6 C -0.009 4.009 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.142 4.142 10 N -0.531 5.531 11 Si 0.719 3.281 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.210 1.210 15 C 0.299 3.701 16 O -0.406 6.406 17 O -0.321 6.321 18 C -0.072 4.072 19 C -0.123 4.123 20 C -0.143 4.143 21 C -0.137 4.137 22 C -0.139 4.139 23 C -0.109 4.109 24 H 0.097 0.903 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.169 0.831 30 H 0.038 0.962 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.264 0.736 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.375 -1.141 18.412 18.498 hybrid contribution 1.915 -0.111 -1.138 2.230 sum 3.289 -1.253 17.274 17.629 Atomic orbital electron populations 1.21682 0.93475 1.01080 1.03705 1.21542 0.97841 0.91398 1.03063 1.19898 0.82676 0.97494 0.92021 1.60883 1.60229 1.06470 1.01547 1.22380 0.97297 0.99497 0.87820 1.19037 0.96794 0.94879 0.90140 1.21171 1.31349 1.12399 0.91061 0.92778 1.24975 0.95082 0.94986 0.99162 1.69977 1.34824 1.21552 1.26761 0.86549 0.78295 0.79392 0.83842 1.19786 1.20950 1.21027 1.25061 0.93189 0.79522 0.72345 1.90655 1.68436 1.35402 1.46144 1.84586 1.27659 1.43669 1.76227 1.19353 1.01097 0.93878 0.92837 1.21144 0.98906 1.00223 0.92033 1.21087 1.00556 0.94918 0.97710 1.21176 0.99980 0.94254 0.98257 1.21139 1.00149 1.00021 0.92637 1.21058 0.97583 0.93939 0.98330 0.90276 0.93111 0.92713 0.90815 0.90849 0.83116 0.96155 0.91544 0.95439 0.96606 0.93026 0.73603 0.85485 0.86037 0.86204 0.85839 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.44 37.15 0.35 -1.61 16 2 C -0.10 -1.47 3.47 -26.73 -0.09 -1.56 16 3 C 0.17 2.62 0.50 -133.90 -0.07 2.55 16 4 N -0.66 -11.18 4.77 -102.32 -0.49 -11.67 16 5 C 0.06 1.17 4.75 -3.82 -0.02 1.16 16 6 C 0.03 0.73 5.23 -27.88 -0.15 0.59 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 11 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 C 0.46 7.35 5.88 36.00 0.21 7.56 16 16 O -0.52 -9.25 16.95 -18.75 -0.32 -9.56 16 17 O -0.51 -7.21 12.23 -39.27 -0.48 -7.69 16 18 C -0.07 -0.96 4.11 -104.63 -0.43 -1.39 16 19 C -0.10 -1.27 8.17 -39.58 -0.32 -1.59 16 20 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 21 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 22 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 23 C -0.09 -1.16 9.28 -39.58 -0.37 -1.53 16 24 H 0.08 1.27 7.28 -51.93 -0.38 0.89 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.72 6.64 -51.93 -0.34 0.37 16 27 H 0.07 1.17 6.68 -51.93 -0.35 0.83 16 28 H 0.07 0.98 6.11 -51.93 -0.32 0.66 16 29 H 0.35 5.79 6.41 -39.29 -0.25 5.54 16 30 H 0.02 0.43 6.64 -51.93 -0.34 0.08 16 31 H 0.07 1.36 6.34 -51.93 -0.33 1.03 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.41 4.00 9.10 45.56 0.41 4.42 16 36 H 0.13 1.44 6.05 -52.49 -0.32 1.12 16 37 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 38 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.13 1.63 6.28 -52.48 -0.33 1.30 16 LS Contribution 325.80 15.07 4.91 4.91 Total: -1.00 -31.98 325.80 -7.77 -39.75 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -4.62 Total: 7.61 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -2.49 Total: -14.12 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.25 Total: -37.41 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.80 Total: -17.25 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.98 -7.77 -39.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736918060.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.261 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds