Wall clock time and date at job start Mon Mar 30 2020 02:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47252 * 2 1 4 4 N 1.46905 * 109.46947 * 304.99800 * 3 2 1 5 5 C 1.46901 * 110.99870 * 300.00190 * 4 3 2 6 6 C 1.53004 * 109.46916 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.46807 * 179.97438 * 6 5 4 8 8 H 1.07995 * 120.00107 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99714 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99944 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99765 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47371 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46838 * 120.00669 * 11 9 7 14 14 H 1.48505 * 109.46977 * 239.99980 * 11 9 7 15 15 C 1.50697 * 109.47213 * 184.99847 * 3 2 1 16 16 O 1.20827 * 120.00461 * 334.99868 * 15 3 2 17 17 O 1.34235 * 120.00187 * 154.99934 * 15 3 2 18 18 C 1.50697 * 109.47371 * 64.99777 * 3 2 1 19 19 C 1.38238 * 119.99909 * 29.72480 * 18 3 2 20 20 C 1.38230 * 119.99823 * 179.76661 * 19 18 3 21 21 C 1.38239 * 120.00078 * 0.50921 * 20 19 18 22 22 C 1.38232 * 119.99957 * 359.74636 * 21 20 19 23 23 C 1.38230 * 120.00163 * 210.00257 * 18 3 2 24 24 H 1.09000 * 109.47135 * 60.00406 * 1 2 3 25 25 H 1.09002 * 109.47426 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47612 * 300.00374 * 1 2 3 27 27 H 1.09001 * 109.47612 * 239.99626 * 2 1 3 28 28 H 1.09000 * 109.47135 * 119.99594 * 2 1 3 29 29 H 1.00901 * 110.99869 * 176.04901 * 4 3 2 30 30 H 1.09004 * 109.47031 * 299.99620 * 5 4 3 31 31 H 1.08995 * 109.47111 * 59.99900 * 5 4 3 32 32 H 1.08995 * 109.46615 * 299.99641 * 6 5 4 33 33 H 1.08996 * 109.46939 * 60.00272 * 6 5 4 34 34 H 0.97007 * 120.00038 * 179.97438 * 10 9 7 35 35 H 0.96699 * 117.00386 * 180.02562 * 17 15 3 36 36 H 1.08002 * 119.99864 * 0.02562 * 19 18 3 37 37 H 1.08005 * 120.00209 * 180.23420 * 20 19 18 38 38 H 1.08008 * 120.00025 * 179.72376 * 21 20 19 39 39 H 1.07997 * 119.99688 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.00381 * 0.02562 * 23 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4542 2.1689 -1.1346 5 6 1.8225 1.5391 -2.4096 6 6 1.1960 2.3223 -3.5650 7 6 1.5743 1.6764 -4.8731 8 1 2.1994 0.7958 -4.8796 9 6 1.1223 2.2099 -6.0614 10 7 0.3616 3.2826 -6.0534 11 14 1.5918 1.4098 -7.6828 12 1 2.4488 0.2258 -7.4206 13 1 0.3626 0.9822 -8.3979 14 1 2.3368 2.3853 -8.5187 15 6 3.5418 1.4443 -0.1238 16 8 4.1792 0.4843 0.2396 17 8 4.1717 2.5125 -0.6378 18 6 1.6413 2.1163 1.2876 19 6 1.5008 1.3707 2.4432 20 6 1.1398 1.9896 3.6253 21 6 0.9090 3.3524 3.6497 22 6 1.0444 4.0971 2.4930 23 6 1.4105 3.4790 1.3120 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.7247 3.1409 -1.1200 30 1 2.9073 1.5411 -2.5159 31 1 1.4576 0.5121 -2.4262 32 1 0.1112 2.3206 -3.4589 33 1 1.5613 3.3491 -3.5482 34 1 0.0439 3.6582 -6.8895 35 1 5.1358 2.4670 -0.6975 36 1 1.6771 0.3054 2.4233 37 1 1.0337 1.4077 4.5291 38 1 0.6226 3.8352 4.5725 39 1 0.8637 5.1616 2.5120 40 1 1.5155 4.0608 0.4081 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736918060.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:08 Heat of formation + Delta-G solvation = -90.189820 kcal Electronic energy + Delta-G solvation = -22021.297075 eV Core-core repulsion = 18799.767810 eV Total energy + Delta-G solvation = -3221.529266 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.15215 -40.10198 -38.05062 -37.32579 -35.54155 -33.83885 -32.28405 -31.39196 -30.59656 -27.90971 -25.94041 -24.17284 -23.76313 -23.09295 -22.32033 -20.49389 -19.19780 -18.63190 -18.35798 -18.09156 -16.86852 -16.50843 -16.22206 -16.19755 -15.57517 -15.05628 -15.00343 -14.73377 -14.60441 -14.07432 -13.92693 -13.73634 -13.43363 -13.16779 -12.91646 -12.85125 -12.65284 -12.60823 -12.44941 -12.21400 -12.09289 -11.95381 -11.61485 -11.55802 -11.37871 -11.25361 -10.56372 -9.80238 -9.77589 -9.50587 -8.20265 -6.30960 0.30562 0.51994 1.05097 1.39897 1.40617 1.53354 1.97369 2.40003 2.89381 3.06514 3.13726 3.51272 3.64686 4.05049 4.15168 4.17513 4.30620 4.37007 4.42253 4.46582 4.60025 4.64423 4.67735 4.82904 4.99971 5.04363 5.06469 5.17051 5.21451 5.37028 5.42921 5.54832 5.55408 5.60179 5.63503 5.66798 5.77411 5.98098 6.09965 6.17142 6.34543 6.82174 6.85071 7.38029 8.91808 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024033 B = 0.004474 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.788877 B = 6256.682985 C = 6482.304566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.101 4.101 3 C 0.174 3.826 4 N -0.654 5.654 5 C 0.080 3.920 6 C 0.038 3.962 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.006 3.994 10 N -0.928 5.928 11 Si 0.962 3.038 12 H -0.265 1.265 13 H -0.277 1.277 14 H -0.277 1.277 15 C 0.459 3.541 16 O -0.541 6.541 17 O -0.512 6.512 18 C -0.089 4.089 19 C -0.115 4.115 20 C -0.123 4.123 21 C -0.114 4.114 22 C -0.125 4.125 23 C -0.109 4.109 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.349 0.651 30 H 0.015 0.985 31 H 0.065 0.935 32 H 0.001 0.999 33 H -0.006 1.006 34 H 0.264 0.736 35 H 0.423 0.577 36 H 0.132 0.868 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.143 0.857 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.491 -1.128 19.812 20.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.138 4.138 3 C 0.081 3.919 4 N -0.287 5.287 5 C -0.049 4.049 6 C 0.001 3.999 7 C -0.581 4.581 8 H 0.074 0.926 9 C -0.192 4.192 10 N -0.568 5.568 11 Si 0.787 3.213 12 H -0.189 1.189 13 H -0.203 1.203 14 H -0.203 1.203 15 C 0.300 3.700 16 O -0.429 6.429 17 O -0.325 6.325 18 C -0.089 4.089 19 C -0.133 4.133 20 C -0.141 4.141 21 C -0.132 4.132 22 C -0.143 4.143 23 C -0.128 4.128 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.170 0.830 30 H 0.033 0.967 31 H 0.083 0.917 32 H 0.020 0.980 33 H 0.013 0.987 34 H 0.073 0.927 35 H 0.285 0.715 36 H 0.150 0.850 37 H 0.167 0.833 38 H 0.168 0.832 39 H 0.161 0.839 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.561 -1.564 19.849 19.971 hybrid contribution 1.864 0.094 -1.490 2.388 sum 3.425 -1.470 18.358 18.733 Atomic orbital electron populations 1.21591 0.92842 1.01896 1.02710 1.21567 0.98314 0.91060 1.02897 1.19943 0.82250 0.97723 0.92015 1.60762 1.60552 1.06565 1.00811 1.21933 0.96264 0.98689 0.87990 1.18844 0.95239 0.94250 0.91599 1.21569 1.31488 1.12652 0.92435 0.92634 1.25875 0.94853 0.95468 1.03046 1.70096 1.35796 1.22917 1.27962 0.85442 0.78218 0.78615 0.79021 1.18922 1.20262 1.20312 1.25195 0.93568 0.79387 0.71880 1.90638 1.68935 1.36112 1.47265 1.84553 1.29353 1.42963 1.75640 1.19276 1.02947 0.94323 0.92382 1.21288 0.99281 1.00531 0.92226 1.21443 0.99205 0.95447 0.97968 1.21573 0.98448 0.94190 0.99006 1.21422 0.99416 1.01202 0.92244 1.21124 0.98778 0.93822 0.99044 0.92968 0.91409 0.91852 0.92577 0.89330 0.82967 0.96716 0.91669 0.98036 0.98740 0.92717 0.71548 0.85030 0.83272 0.83166 0.83905 0.86135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.61 9.44 71.98 0.68 -2.94 16 2 C -0.10 -2.92 3.47 30.59 0.11 -2.81 16 3 C 0.17 5.29 0.50 2.03 0.00 5.29 16 4 N -0.65 -22.84 4.77 -477.63 -2.28 -25.11 16 5 C 0.08 3.35 4.75 86.30 0.41 3.76 16 6 C 0.04 2.01 5.23 29.85 0.16 2.16 16 7 C -0.54 -30.93 9.11 25.60 0.23 -30.69 16 8 H 0.06 3.08 7.74 -2.91 -0.02 3.05 16 9 C 0.01 0.34 5.46 84.66 0.46 0.80 16 10 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 11 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 13 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 14 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 15 C 0.46 14.66 5.88 71.23 0.42 15.08 16 16 O -0.54 -19.10 16.95 21.96 0.37 -18.73 16 17 O -0.51 -14.41 12.23 -51.47 -0.63 -15.04 16 18 C -0.09 -2.34 4.11 -19.87 -0.08 -2.42 16 19 C -0.12 -2.59 8.17 22.27 0.18 -2.40 16 20 C -0.12 -2.18 10.05 22.27 0.22 -1.96 16 21 C -0.11 -1.92 10.05 22.27 0.22 -1.69 16 22 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 23 C -0.11 -2.72 9.28 22.27 0.21 -2.52 16 24 H 0.05 1.70 7.28 -2.39 -0.02 1.68 16 25 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 1.59 6.64 -2.39 -0.02 1.58 16 27 H 0.06 1.80 6.68 -2.39 -0.02 1.79 16 28 H 0.09 2.28 6.11 -2.39 -0.01 2.27 16 29 H 0.35 12.05 6.41 -89.69 -0.58 11.47 16 30 H 0.01 0.63 6.64 -2.39 -0.02 0.62 16 31 H 0.06 2.75 6.34 -2.39 -0.02 2.74 16 32 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 33 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 34 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 35 H 0.42 8.15 9.10 -74.06 -0.67 7.48 16 36 H 0.13 2.75 6.05 -2.91 -0.02 2.73 16 37 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 38 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 39 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 40 H 0.12 3.11 6.28 -2.91 -0.02 3.09 16 Total: -1.00 -68.99 325.80 3.04 -65.95 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: -0.18 Total: 24.96 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: 3.45 Total: -22.60 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -1.99 Total: -80.86 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.26 Total: -33.77 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -68.99 3.04 -65.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736918060.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.238 kcal (2) G-P(sol) polarization free energy of solvation -68.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds