Wall clock time and date at job start Mon Mar 30 2020 02:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46629 * 2 1 4 4 C 1.50691 * 109.47153 * 120.00218 * 2 1 3 5 5 C 1.38368 * 119.45550 * 274.99994 * 4 2 1 6 6 C 1.38345 * 119.30788 * 179.97438 * 5 4 2 7 7 C 1.40068 * 118.28385 * 0.02562 * 6 5 4 8 8 C 1.47723 * 120.56295 * 179.97438 * 7 6 5 9 9 O 1.21472 * 120.00258 * 359.97438 * 8 7 6 10 10 O 1.34707 * 120.00107 * 179.97438 * 8 7 6 11 11 C 1.45202 * 117.00231 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47429 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.47502 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47313 * 180.02562 * 13 12 11 15 15 H 1.08006 * 120.00135 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99970 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99804 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00015 * 179.97438 * 16 14 13 19 19 H 1.48509 * 109.46797 * 59.99951 * 18 16 14 20 20 H 1.48492 * 109.47151 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47103 * 300.00298 * 18 16 14 22 22 C 1.39570 * 118.87594 * 359.97438 * 7 6 5 23 23 N 1.31690 * 120.55847 * 0.02773 * 22 7 6 24 24 H 1.09000 * 109.46968 * 299.99212 * 1 2 3 25 25 H 1.08998 * 109.47368 * 59.99844 * 1 2 3 26 26 H 1.09001 * 109.46745 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46968 * 240.00788 * 2 1 3 28 28 H 1.08998 * 109.47372 * 300.00153 * 3 2 1 29 29 H 1.09008 * 109.47073 * 60.00651 * 3 2 1 30 30 H 1.09001 * 109.46928 * 179.97438 * 3 2 1 31 31 H 1.07996 * 120.34384 * 0.25240 * 5 4 2 32 32 H 1.08001 * 120.85562 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.47343 * 300.00388 * 11 10 8 34 34 H 1.08995 * 109.47104 * 60.00046 * 11 10 8 35 35 H 1.09003 * 109.46993 * 300.00380 * 12 11 10 36 36 H 1.09003 * 109.46964 * 60.00113 * 12 11 10 37 37 H 1.09000 * 109.46787 * 300.00174 * 13 12 11 38 38 H 1.08995 * 109.47092 * 59.99787 * 13 12 11 39 39 H 0.97003 * 119.99836 * 180.02562 * 17 16 14 40 40 H 1.08004 * 119.72429 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.1602 -0.0093 2.4164 6 6 2.6212 -0.6646 3.5442 7 6 2.9428 -2.0237 3.4371 8 6 3.4400 -2.7725 4.6094 9 8 3.5733 -2.2098 5.6777 10 8 3.7455 -4.0794 4.4939 11 6 4.2288 -4.7514 5.6868 12 6 4.5217 -6.2177 5.3629 13 6 5.0305 -6.9261 6.6200 14 6 5.3195 -8.3702 6.3008 15 1 5.1563 -8.7455 5.3013 16 6 5.7914 -9.2127 7.2850 17 7 5.9897 -8.7558 8.5021 18 14 6.1490 -11.0030 6.8894 19 1 7.1835 -11.0779 5.8266 20 1 6.6429 -11.6903 8.1095 21 1 4.9056 -11.6635 6.4174 22 6 2.7858 -2.6584 2.2041 23 7 2.3431 -1.9906 1.1589 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5137 -0.8901 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9564 0.8901 30 1 3.1300 1.4426 0.0005 31 1 1.8986 1.0375 2.4623 32 1 2.7301 -0.1418 4.4829 33 1 5.1420 -4.2666 6.0322 34 1 3.4704 -4.6959 6.4676 35 1 3.6088 -6.7028 5.0172 36 1 5.2804 -6.2728 4.5822 37 1 5.9432 -6.4411 6.9660 38 1 4.2715 -6.8710 7.4004 39 1 6.3220 -9.3485 9.1944 40 1 3.0293 -3.7060 2.1062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772396847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:16 Heat of formation + Delta-G solvation = -97.602084 kcal Electronic energy + Delta-G solvation = -20118.739695 eV Core-core repulsion = 16896.889010 eV Total energy + Delta-G solvation = -3221.850686 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.99161 -40.92513 -37.93130 -36.57892 -35.94779 -33.79018 -33.65410 -31.69199 -29.03286 -28.04166 -26.41567 -25.09136 -24.47849 -22.71241 -22.18201 -21.32322 -19.28460 -18.66693 -18.07720 -17.74510 -17.22247 -16.97767 -16.49271 -15.86983 -15.75997 -15.31488 -14.86691 -14.83841 -14.26214 -14.15781 -13.93624 -13.83868 -13.78579 -13.58704 -12.87643 -12.81171 -12.54561 -12.45671 -12.25676 -12.11216 -12.07758 -12.04851 -11.79344 -11.49850 -11.44629 -11.26906 -11.07843 -10.58241 -10.56974 -10.17325 -8.21983 -6.33478 -0.63799 0.10646 1.33807 1.40783 1.44683 1.46883 1.53225 2.41233 2.63101 3.02105 3.11846 3.51431 3.57216 3.71930 3.87596 3.98228 4.02432 4.07098 4.15582 4.26317 4.38463 4.50938 4.65333 4.73964 4.78604 4.83007 4.87611 4.93451 5.00224 5.04371 5.06223 5.21381 5.31280 5.37131 5.42699 5.48374 5.49133 5.63215 5.79680 6.18519 6.51156 6.77357 6.82173 7.35909 8.89985 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040643 B = 0.002520 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.761642 B =11106.889299 C =11621.963074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.051 4.051 3 C -0.146 4.146 4 C 0.162 3.838 5 C -0.171 4.171 6 C -0.012 4.012 7 C -0.198 4.198 8 C 0.511 3.489 9 O -0.535 6.535 10 O -0.350 6.350 11 C 0.079 3.921 12 C -0.094 4.094 13 C 0.026 3.974 14 C -0.544 4.544 15 H 0.065 0.935 16 C -0.002 4.002 17 N -0.933 5.933 18 Si 0.969 3.031 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.266 1.266 22 C 0.162 3.838 23 N -0.508 5.508 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.044 0.956 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.180 0.820 32 H 0.157 0.843 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.068 0.932 37 H -0.003 1.003 38 H -0.003 1.003 39 H 0.265 0.735 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.584 21.846 -18.113 30.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.070 4.070 3 C -0.204 4.204 4 C 0.025 3.975 5 C -0.190 4.190 6 C -0.037 4.037 7 C -0.202 4.202 8 C 0.357 3.643 9 O -0.426 6.426 10 O -0.266 6.266 11 C 0.006 3.994 12 C -0.132 4.132 13 C -0.011 4.011 14 C -0.582 4.582 15 H 0.083 0.917 16 C -0.200 4.200 17 N -0.573 5.573 18 Si 0.793 3.207 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.190 1.190 22 C 0.004 3.996 23 N -0.217 5.217 24 H 0.083 0.917 25 H 0.102 0.898 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.197 0.803 32 H 0.175 0.825 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.073 0.927 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -10.568 21.487 -18.408 30.203 hybrid contribution 0.617 -0.807 1.539 1.844 sum -9.951 20.680 -16.869 28.482 Atomic orbital electron populations 1.21807 0.92304 1.02006 1.03598 1.20259 0.97071 0.96424 0.93255 1.21954 1.01228 0.93234 1.03972 1.22181 0.89804 0.89313 0.96240 1.22288 1.01791 1.03453 0.91516 1.21958 0.89917 0.91298 1.00555 1.20163 1.10518 0.96012 0.93471 1.21357 0.73935 0.80826 0.88200 1.90812 1.51438 1.70095 1.30295 1.86507 1.75769 1.23291 1.41068 1.23213 0.98913 0.93006 0.84309 1.21471 1.01676 0.90347 0.99662 1.18930 0.94915 0.94677 0.92602 1.21594 1.44002 0.95761 0.96803 0.91650 1.26016 0.95214 1.03963 0.94780 1.70092 1.46572 1.37736 1.02935 0.85441 0.79020 0.78581 0.77653 1.19057 1.20944 1.19046 1.23336 0.89316 1.00725 0.86213 1.67699 1.13050 1.09679 1.31301 0.91658 0.89817 0.93647 0.89413 0.90081 0.90707 0.92682 0.80254 0.82535 0.91625 0.91620 0.91331 0.91322 0.98441 0.98435 0.92678 0.80667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.18 71.99 0.66 -0.64 16 2 C -0.05 -0.57 3.23 -11.54 -0.04 -0.61 16 3 C -0.15 -0.96 8.62 71.98 0.62 -0.34 16 4 C 0.16 2.74 5.79 42.57 0.25 2.98 16 5 C -0.17 -2.48 9.16 22.33 0.20 -2.28 16 6 C -0.01 -0.23 9.72 22.74 0.22 -0.01 16 7 C -0.20 -4.94 5.89 -20.01 -0.12 -5.06 16 8 C 0.51 16.14 7.91 70.33 0.56 16.69 16 9 O -0.54 -19.44 16.21 19.93 0.32 -19.12 16 10 O -0.35 -11.67 9.50 -56.17 -0.53 -12.21 16 11 C 0.08 2.94 5.48 71.98 0.39 3.33 16 12 C -0.09 -3.89 5.53 30.59 0.17 -3.72 16 13 C 0.03 1.37 4.97 29.85 0.15 1.52 16 14 C -0.54 -30.83 9.11 25.60 0.23 -30.59 16 15 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 16 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 17 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 18 Si 0.97 44.15 29.54 68.60 2.03 46.17 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 22 C 0.16 3.81 10.79 85.04 0.92 4.72 16 23 N -0.51 -11.29 10.25 -182.77 -1.87 -13.16 16 24 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.07 0.30 6.48 -2.38 -0.02 0.29 16 30 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.18 1.30 6.29 -2.91 -0.02 1.28 16 32 H 0.16 2.78 7.74 -2.91 -0.02 2.75 16 33 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 39 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 40 H 0.18 3.89 7.62 -2.91 -0.02 3.87 16 Total: -1.00 -68.89 342.80 5.92 -62.97 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: 1.02 Total: 5.68 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: 4.68 Total: -13.64 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -1.59 Total: -69.85 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.21 Total: -31.33 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -68.89 5.92 -62.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772396847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.636 kcal (2) G-P(sol) polarization free energy of solvation -68.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds