Wall clock time and date at job start Mon Mar 30 2020 02:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47094 * 2 1 4 4 C 1.38632 * 119.54680 * 125.00572 * 3 2 1 5 5 C 1.38587 * 119.35656 * 179.97438 * 4 3 2 6 6 C 1.38630 * 118.48820 * 0.25170 * 5 4 3 7 7 C 1.39303 * 119.05962 * 359.52355 * 6 5 4 8 8 C 1.48066 * 119.72728 * 180.23022 * 7 6 5 9 9 O 1.21435 * 120.00003 * 0.25464 * 8 7 6 10 10 O 1.34680 * 120.00448 * 180.25337 * 8 7 6 11 11 C 1.45195 * 117.00576 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47491 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47290 * 300.00360 * 12 11 10 14 14 C 1.53004 * 109.46923 * 60.00220 * 12 11 10 15 15 C 1.50701 * 109.47279 * 180.02562 * 12 11 10 16 16 H 1.08000 * 119.99963 * 0.02562 * 15 12 11 17 17 C 1.37878 * 119.99886 * 180.02562 * 15 12 11 18 18 N 1.31510 * 120.00054 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99869 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.47115 * 0.02562 * 19 17 15 21 21 H 1.48490 * 109.47176 * 119.99873 * 19 17 15 22 22 H 1.48495 * 109.46873 * 240.00216 * 19 17 15 23 23 N 1.31478 * 119.55037 * 305.02586 * 3 2 1 24 24 H 1.08995 * 109.47083 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46831 * 299.99795 * 1 2 3 26 26 H 1.08998 * 109.47128 * 59.99429 * 1 2 3 27 27 H 1.09002 * 109.46831 * 240.00205 * 2 1 3 28 28 H 1.08996 * 109.47955 * 120.00189 * 2 1 3 29 29 H 1.07995 * 120.32139 * 0.02562 * 4 3 2 30 30 H 1.08002 * 120.75096 * 179.97438 * 5 4 3 31 31 H 1.08001 * 120.46741 * 179.75133 * 6 5 4 32 32 H 1.08998 * 109.46988 * 300.00728 * 11 10 8 33 33 H 1.08999 * 109.46832 * 59.99968 * 11 10 8 34 34 H 1.08998 * 109.47220 * 59.99725 * 13 12 11 35 35 H 1.08998 * 109.47393 * 179.97438 * 13 12 11 36 36 H 1.08999 * 109.47047 * 299.99816 * 13 12 11 37 37 H 1.09004 * 109.47192 * 60.00069 * 14 12 11 38 38 H 1.08998 * 109.47065 * 180.02562 * 14 12 11 39 39 H 1.08998 * 109.47063 * 299.99954 * 14 12 11 40 40 H 0.97003 * 120.00176 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9125 1.8347 0.9879 5 6 3.3723 3.1421 0.9838 6 6 2.9275 3.9964 -0.0133 7 6 2.0464 3.5110 -0.9769 8 6 1.5659 4.4092 -2.0514 9 8 1.9436 5.5626 -2.0928 10 8 0.7100 3.9471 -2.9830 11 6 0.2806 4.8836 -4.0061 12 6 -0.6812 4.1828 -4.9677 13 6 0.0288 2.9984 -5.6262 14 6 -1.9007 3.6796 -4.1927 15 6 -1.1265 5.1547 -6.0299 16 1 -0.7597 6.1705 -6.0204 17 6 -2.0020 4.7470 -7.0140 18 7 -2.4489 3.5102 -7.0253 19 14 -2.5544 5.9519 -8.3303 20 1 -1.9128 7.2704 -8.0952 21 1 -2.1584 5.4406 -9.6669 22 1 -4.0307 6.1024 -8.2752 23 7 1.6295 2.2510 -0.9366 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.2372 1.1449 1.7527 30 1 4.0581 3.4886 1.7428 31 1 3.2622 5.0227 -0.0446 32 1 -0.2249 5.7277 -3.5369 33 1 1.1493 5.2417 -4.5585 34 1 0.3512 2.2953 -4.8581 35 1 -0.6565 2.4989 -6.3109 36 1 0.8976 3.3569 -6.1783 37 1 -2.4066 4.5235 -3.7235 38 1 -2.5857 3.1800 -4.8776 39 1 -1.5783 2.9766 -3.4246 40 1 -3.0651 3.2235 -7.7174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835304781.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:21 Heat of formation + Delta-G solvation = -81.507344 kcal Electronic energy + Delta-G solvation = -21451.631056 eV Core-core repulsion = 18230.478291 eV Total energy + Delta-G solvation = -3221.152765 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.90031 -40.76138 -38.35080 -36.67040 -35.17741 -33.69019 -33.19470 -31.05079 -27.93131 -27.61146 -27.25777 -25.93475 -25.23729 -22.69249 -21.96715 -20.77071 -19.36353 -17.92852 -17.84441 -17.47079 -17.14242 -16.87868 -16.60980 -15.74753 -15.38711 -14.98883 -14.88998 -14.64849 -14.50238 -14.12284 -13.70852 -13.37845 -13.26550 -13.15795 -12.90229 -12.84167 -12.60983 -12.40248 -12.36584 -12.14922 -11.95828 -11.89522 -11.77077 -11.32123 -11.27937 -10.95554 -10.75804 -10.49602 -10.42421 -10.09837 -8.05241 -6.24109 -0.54110 0.21866 1.33384 1.42251 1.43998 1.54002 1.63736 2.44276 2.72788 3.02587 3.17890 3.61302 3.82369 3.91716 4.04288 4.20580 4.21723 4.36340 4.38066 4.48321 4.53679 4.56665 4.78831 4.86497 5.00886 5.03155 5.05143 5.08961 5.17991 5.20464 5.23916 5.29475 5.45785 5.47273 5.60003 5.60987 5.62484 6.02306 6.14352 6.33889 6.51021 6.80119 6.91662 7.43891 8.95030 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026423 B = 0.004184 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.415380 B = 6690.901681 C = 7503.698693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.069 4.069 3 C 0.108 3.892 4 C -0.122 4.122 5 C -0.071 4.071 6 C -0.116 4.116 7 C 0.066 3.934 8 C 0.506 3.494 9 O -0.532 6.532 10 O -0.333 6.333 11 C 0.092 3.908 12 C 0.062 3.938 13 C -0.115 4.115 14 C -0.115 4.115 15 C -0.534 4.534 16 H 0.051 0.949 17 C 0.027 3.973 18 N -0.900 5.900 19 Si 0.956 3.044 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.279 1.279 23 N -0.467 5.467 24 H 0.076 0.924 25 H 0.053 0.947 26 H 0.033 0.967 27 H 0.080 0.920 28 H 0.121 0.879 29 H 0.189 0.811 30 H 0.190 0.810 31 H 0.153 0.847 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.025 0.975 35 H 0.065 0.935 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.065 0.935 39 H 0.025 0.975 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.980 -7.099 18.711 22.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 C -0.033 4.033 4 C -0.141 4.141 5 C -0.096 4.096 6 C -0.136 4.136 7 C -0.069 4.069 8 C 0.351 3.649 9 O -0.423 6.423 10 O -0.248 6.248 11 C 0.019 3.981 12 C 0.062 3.938 13 C -0.173 4.173 14 C -0.173 4.173 15 C -0.572 4.572 16 H 0.069 0.931 17 C -0.173 4.173 18 N -0.538 5.538 19 Si 0.782 3.218 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.205 1.205 23 N -0.179 5.179 24 H 0.095 0.905 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.099 0.901 28 H 0.139 0.861 29 H 0.206 0.794 30 H 0.208 0.792 31 H 0.170 0.830 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.346 -7.119 17.869 21.841 hybrid contribution -0.044 1.374 -0.704 1.544 sum 10.302 -5.745 17.165 20.828 Atomic orbital electron populations 1.21671 0.94971 1.02455 1.01306 1.20633 0.96338 0.88748 1.04974 1.22032 0.94135 0.96912 0.90255 1.22816 0.95080 0.97510 0.98740 1.22103 0.97899 0.92562 0.96997 1.22302 0.95043 1.02792 0.93469 1.19985 1.00054 0.91325 0.95487 1.21585 0.76132 0.85879 0.81307 1.90763 1.57099 1.19378 1.75058 1.86695 1.56598 1.44473 1.37016 1.23385 0.97643 0.90667 0.86449 1.18264 0.90833 0.93813 0.90904 1.21586 0.98446 0.98041 0.99233 1.21586 0.99434 0.98359 0.97904 1.21210 1.27974 0.96880 1.11093 0.93066 1.25550 0.95659 0.96795 0.99258 1.69959 1.32392 1.17115 1.34371 0.85535 0.77982 0.79264 0.79008 1.19631 1.20458 1.20452 1.67351 1.22895 1.02657 1.25026 0.90469 0.92806 0.94759 0.90133 0.86109 0.79352 0.79248 0.82961 0.92960 0.92955 0.95605 0.91650 0.96110 0.96132 0.91642 0.95613 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.77 71.98 0.70 -2.22 16 2 C -0.07 -1.13 6.33 29.85 0.19 -0.94 16 3 C 0.11 2.34 6.18 42.70 0.26 2.60 16 4 C -0.12 -1.63 9.72 22.45 0.22 -1.41 16 5 C -0.07 -0.98 10.17 22.45 0.23 -0.75 16 6 C -0.12 -2.70 9.63 22.62 0.22 -2.48 16 7 C 0.07 2.17 6.75 41.87 0.28 2.46 16 8 C 0.51 20.67 7.95 70.43 0.56 21.23 16 9 O -0.53 -22.89 16.11 20.05 0.32 -22.56 16 10 O -0.33 -15.22 8.69 -55.89 -0.49 -15.70 16 11 C 0.09 4.44 4.27 71.98 0.31 4.75 16 12 C 0.06 3.26 0.58 -52.93 -0.03 3.23 16 13 C -0.12 -5.96 8.11 71.98 0.58 -5.38 16 14 C -0.12 -5.95 8.11 71.98 0.58 -5.37 16 15 C -0.53 -29.74 8.01 25.60 0.21 -29.54 16 16 H 0.05 2.85 7.74 -2.91 -0.02 2.82 16 17 C 0.03 1.50 5.15 84.66 0.44 1.93 16 18 N -0.90 -50.45 9.35 21.45 0.20 -50.25 16 19 Si 0.96 43.58 29.54 68.60 2.03 45.60 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 N -0.47 -14.83 9.63 -173.12 -1.67 -16.50 16 24 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 26 H 0.03 0.94 7.94 -2.39 -0.02 0.92 16 27 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.12 0.94 7.87 -2.39 -0.02 0.92 16 29 H 0.19 0.71 7.95 -2.91 -0.02 0.69 16 30 H 0.19 0.91 8.06 -2.91 -0.02 0.89 16 31 H 0.15 3.33 7.64 -2.91 -0.02 3.31 16 32 H 0.05 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.05 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.02 1.25 7.68 -2.39 -0.02 1.23 16 35 H 0.06 3.61 6.07 -2.39 -0.01 3.60 16 36 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 3.61 6.07 -2.39 -0.01 3.60 16 39 H 0.02 1.24 7.68 -2.39 -0.02 1.22 16 40 H 0.26 13.96 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -69.45 335.35 6.16 -63.29 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 1.02 Total: 8.01 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 4.75 Total: -11.89 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: -1.47 Total: -66.75 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -0.16 Total: -38.27 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -69.45 6.16 -63.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835304781.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.222 kcal (2) G-P(sol) polarization free energy of solvation -69.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds