Wall clock time and date at job start Mon Mar 30 2020 01:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38629 * 120.32248 * 2 1 4 4 C 1.38586 * 118.49225 * 179.97438 * 3 2 1 5 5 C 1.39347 * 119.05463 * 0.02562 * 4 3 2 6 6 C 1.48069 * 119.72832 * 180.25915 * 5 4 3 7 7 O 1.21432 * 119.99870 * 359.72421 * 6 5 4 8 8 O 1.34680 * 120.00251 * 179.72593 * 6 5 4 9 9 C 1.45197 * 116.99931 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47264 * 180.02562 * 9 8 6 11 11 C 1.52993 * 109.46790 * 299.99956 * 10 9 8 12 12 C 1.53000 * 109.46988 * 60.00024 * 10 9 8 13 13 C 1.50699 * 109.47339 * 179.97438 * 10 9 8 14 14 H 1.08004 * 119.99628 * 359.97438 * 13 10 9 15 15 C 1.37878 * 120.00019 * 179.97438 * 13 10 9 16 16 N 1.31508 * 119.99881 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 120.00044 * 179.97438 * 15 13 10 18 18 H 1.48507 * 109.46955 * 89.99879 * 17 15 13 19 19 H 1.48496 * 109.47266 * 209.99956 * 17 15 13 20 20 H 1.48505 * 109.47190 * 330.00279 * 17 15 13 21 21 N 1.32754 * 120.54775 * 359.97438 * 5 4 3 22 22 C 1.31496 * 121.64043 * 0.02562 * 21 5 4 23 23 C 1.50702 * 119.54787 * 180.02562 * 22 21 5 24 24 H 1.09001 * 109.46944 * 270.02032 * 1 2 3 25 25 H 1.09003 * 109.46996 * 30.01974 * 1 2 3 26 26 H 1.08994 * 109.47625 * 150.02083 * 1 2 3 27 27 H 1.08001 * 120.75288 * 359.95769 * 3 2 1 28 28 H 1.07994 * 120.47482 * 180.02562 * 4 3 2 29 29 H 1.09010 * 109.47301 * 300.00057 * 9 8 6 30 30 H 1.08995 * 109.47287 * 59.99655 * 9 8 6 31 31 H 1.09004 * 109.47634 * 59.99792 * 11 10 9 32 32 H 1.09005 * 109.47251 * 179.97438 * 11 10 9 33 33 H 1.08997 * 109.47675 * 299.99836 * 11 10 9 34 34 H 1.08996 * 109.47220 * 60.00293 * 12 10 9 35 35 H 1.09005 * 109.46942 * 180.02562 * 12 10 9 36 36 H 1.09004 * 109.47162 * 300.00042 * 12 10 9 37 37 H 0.96998 * 120.00199 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.47156 * 89.99659 * 23 22 21 39 39 H 1.09002 * 109.47118 * 209.99763 * 23 22 21 40 40 H 1.09008 * 109.46886 * 329.99718 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1966 0.0000 4 6 3.5920 1.1524 0.0005 5 6 4.2295 -0.0867 0.0005 6 6 5.7087 -0.1514 0.0069 7 8 6.3613 0.8727 0.0071 8 8 6.3306 -1.3461 0.0125 9 6 7.7825 -1.3334 0.0180 10 6 8.3050 -2.7714 0.0232 11 6 7.7966 -3.4942 1.2722 12 6 7.8061 -3.4999 -1.2263 13 6 9.8120 -2.7583 0.0283 14 1 10.3438 -1.8183 0.0275 15 6 10.5117 -3.9463 0.0341 16 7 9.8641 -5.0909 0.0346 17 14 12.3796 -3.9301 0.0397 18 1 12.8703 -3.9215 1.4413 19 1 12.8872 -5.1404 -0.6551 20 1 12.8662 -2.7154 -0.6626 21 7 3.5215 -1.2097 0.0005 22 6 2.2066 -1.1963 0.0000 23 6 1.4500 -2.4996 0.0006 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6845 2.1419 -0.0007 28 1 4.1691 2.0652 0.0010 29 1 8.1448 -0.8188 -0.8720 30 1 8.1379 -0.8140 0.9079 31 1 6.7066 -3.5037 1.2681 32 1 8.1685 -4.5188 1.2757 33 1 8.1520 -2.9753 2.1624 34 1 8.1684 -2.9849 -2.1160 35 1 8.1780 -4.5245 -1.2223 36 1 6.7161 -3.5094 -1.2304 37 1 10.3563 -5.9267 0.0391 38 1 1.2673 -2.8132 1.0284 39 1 0.4981 -2.3673 -0.5137 40 1 2.0376 -3.2610 -0.5126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842338643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:14 Heat of formation + Delta-G solvation = -80.722558 kcal Electronic energy + Delta-G solvation = -21327.926703 eV Core-core repulsion = 18106.807968 eV Total energy + Delta-G solvation = -3221.118734 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.95276 -40.85506 -38.35877 -36.67206 -35.01233 -34.08575 -33.27183 -29.43477 -28.92190 -27.61357 -27.49888 -26.98971 -24.42333 -23.40613 -21.88147 -20.77611 -19.40638 -17.97512 -17.83169 -17.48228 -17.23369 -16.73616 -16.10966 -15.81909 -15.32909 -14.92484 -14.79711 -14.58432 -14.17612 -13.71280 -13.67125 -13.60123 -13.42045 -13.20561 -13.16190 -12.96393 -12.84317 -12.63847 -12.36098 -12.35009 -12.15049 -11.91977 -11.77403 -11.32254 -11.28431 -10.82784 -10.76898 -10.56091 -10.42303 -9.89826 -8.05354 -6.24424 -0.58182 0.18499 1.29784 1.43306 1.43734 1.52901 1.62983 2.44140 2.67195 3.03163 3.17636 3.65610 3.76344 3.81043 3.90505 4.15069 4.21439 4.21581 4.51993 4.55190 4.67101 4.72764 4.74601 4.78326 4.91796 4.99683 5.00648 5.16285 5.17759 5.20246 5.22286 5.25551 5.29108 5.46607 5.59765 5.61830 5.67169 6.02067 6.14021 6.33577 6.49774 6.79559 6.89224 7.43504 8.94790 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034409 B = 0.003774 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.541441 B = 7418.016782 C = 8029.890547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.095 4.095 3 C -0.078 4.078 4 C -0.109 4.109 5 C 0.058 3.942 6 C 0.508 3.492 7 O -0.532 6.532 8 O -0.334 6.334 9 C 0.092 3.908 10 C 0.063 3.937 11 C -0.116 4.116 12 C -0.116 4.116 13 C -0.536 4.536 14 H 0.051 0.949 15 C 0.027 3.973 16 N -0.900 5.900 17 Si 0.957 3.043 18 H -0.276 1.276 19 H -0.280 1.280 20 H -0.272 1.272 21 N -0.468 5.468 22 C 0.104 3.896 23 C -0.106 4.106 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.187 0.813 28 H 0.154 0.846 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.025 0.975 32 H 0.065 0.935 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.065 0.935 36 H 0.025 0.975 37 H 0.263 0.737 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.106 9.513 -0.039 24.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.097 4.097 3 C -0.103 4.103 4 C -0.130 4.130 5 C -0.076 4.076 6 C 0.352 3.648 7 O -0.423 6.423 8 O -0.248 6.248 9 C 0.018 3.982 10 C 0.062 3.938 11 C -0.173 4.173 12 C -0.173 4.173 13 C -0.574 4.574 14 H 0.070 0.930 15 C -0.173 4.173 16 N -0.538 5.538 17 Si 0.783 3.217 18 H -0.202 1.202 19 H -0.206 1.206 20 H -0.197 1.197 21 N -0.180 5.180 22 C -0.038 4.038 23 C -0.163 4.163 24 H 0.113 0.887 25 H 0.111 0.889 26 H 0.109 0.891 27 H 0.205 0.795 28 H 0.172 0.828 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.109 0.891 39 H 0.131 0.869 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.332 8.788 -0.045 23.071 hybrid contribution 1.450 0.701 0.035 1.611 sum -19.881 9.489 -0.010 22.030 Atomic orbital electron populations 1.21032 0.86252 1.05326 1.04486 1.21540 1.00141 0.92423 0.95601 1.21950 0.91813 1.00437 0.96083 1.22257 0.96722 0.97188 0.96799 1.19970 0.89589 0.91447 1.06640 1.21526 0.89170 0.81832 0.72230 1.90759 1.67484 1.36251 1.47800 1.86694 1.24482 1.31722 1.81940 1.23397 0.73705 1.00972 1.00097 1.18256 0.93904 0.87708 0.93883 1.21592 0.96779 1.02342 0.96621 1.21592 0.96786 1.02340 0.96613 1.21193 0.90781 0.92903 1.52482 0.93028 1.25558 1.02529 0.94991 0.94216 1.69950 1.36348 0.97572 1.49961 0.85581 0.80371 0.77600 0.78199 1.20170 1.20566 1.19696 1.67426 1.09855 1.30675 1.10032 1.21904 0.88118 0.97873 0.95917 1.20936 0.99885 0.91164 1.04329 0.88678 0.88916 0.89086 0.79533 0.82791 0.92945 0.92918 0.95613 0.91607 0.96124 0.96110 0.91610 0.95615 0.92759 0.89098 0.86854 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 9.62 71.23 0.69 -0.03 16 2 C -0.09 -1.51 5.91 -19.69 -0.12 -1.63 16 3 C -0.08 -1.25 9.85 22.45 0.22 -1.03 16 4 C -0.11 -2.70 9.63 22.62 0.22 -2.48 16 5 C 0.06 1.98 6.75 41.88 0.28 2.26 16 6 C 0.51 21.11 7.95 70.43 0.56 21.67 16 7 O -0.53 -23.18 16.11 20.05 0.32 -22.86 16 8 O -0.33 -15.44 8.69 -55.89 -0.49 -15.92 16 9 C 0.09 4.46 4.27 71.98 0.31 4.77 16 10 C 0.06 3.31 0.58 -52.93 -0.03 3.28 16 11 C -0.12 -6.00 8.11 71.98 0.58 -5.42 16 12 C -0.12 -6.00 8.11 71.98 0.58 -5.42 16 13 C -0.54 -29.99 8.01 25.60 0.21 -29.78 16 14 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 15 C 0.03 1.49 5.15 84.66 0.44 1.92 16 16 N -0.90 -50.62 9.35 21.45 0.20 -50.42 16 17 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 18 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 N -0.47 -15.54 10.03 -173.12 -1.74 -17.27 16 22 C 0.10 2.40 6.78 42.69 0.29 2.69 16 23 C -0.11 -1.75 9.76 71.24 0.70 -1.06 16 24 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.09 0.27 8.09 -2.39 -0.02 0.25 16 26 H 0.09 0.39 5.95 -2.39 -0.01 0.37 16 27 H 0.19 1.33 8.06 -2.91 -0.02 1.31 16 28 H 0.15 3.53 7.64 -2.91 -0.02 3.50 16 29 H 0.05 2.55 8.14 -2.38 -0.02 2.53 16 30 H 0.05 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.02 1.25 7.68 -2.38 -0.02 1.23 16 32 H 0.07 3.65 6.07 -2.38 -0.01 3.63 16 33 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 3.64 6.07 -2.38 -0.01 3.63 16 36 H 0.02 1.25 7.68 -2.38 -0.02 1.23 16 37 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 38 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.11 1.01 5.94 -2.39 -0.01 0.99 16 40 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -69.95 331.73 6.28 -63.67 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: 1.03 Total: 7.36 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 4.92 Total: -10.27 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: -1.54 Total: -67.69 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -0.16 Total: -38.78 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -69.95 6.28 -63.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842338643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.055 kcal (2) G-P(sol) polarization free energy of solvation -69.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds