Wall clock time and date at job start Mon Mar 30 2020 02:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38220 * 120.42100 * 2 1 4 4 N 1.31860 * 120.76284 * 179.97438 * 3 2 1 5 5 C 1.31884 * 121.72590 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.76784 * 0.02562 * 5 4 3 7 7 C 1.38627 * 120.41849 * 179.97438 * 2 1 3 8 8 C 1.50704 * 120.78770 * 0.04459 * 7 2 1 9 9 O 1.45205 * 109.47005 * 179.97438 * 8 7 2 10 10 C 1.34227 * 116.99844 * 179.97438 * 9 8 7 11 11 O 1.20825 * 120.00124 * 0.02562 * 10 9 8 12 12 C 1.50707 * 119.99694 * 180.02562 * 10 9 8 13 13 C 1.52999 * 109.46690 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46888 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.47226 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.46994 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00761 * 359.97438 * 16 15 14 18 18 C 1.37886 * 119.99937 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99972 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99951 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46854 * 89.99772 * 20 18 16 22 22 H 1.48496 * 109.47264 * 210.00165 * 20 18 16 23 23 H 1.48506 * 109.46738 * 330.00280 * 20 18 16 24 24 H 1.08993 * 109.47197 * 270.02066 * 1 2 3 25 25 H 1.09005 * 109.46763 * 30.02164 * 1 2 3 26 26 H 1.09000 * 109.47166 * 150.01378 * 1 2 3 27 27 H 1.07999 * 119.62072 * 0.02562 * 3 2 1 28 28 H 1.07995 * 119.61420 * 179.97438 * 5 4 3 29 29 H 1.07994 * 120.42499 * 179.97438 * 6 5 4 30 30 H 1.08996 * 109.47101 * 299.97236 * 8 7 2 31 31 H 1.09000 * 109.47427 * 59.98256 * 8 7 2 32 32 H 1.08997 * 109.47309 * 300.00018 * 12 10 9 33 33 H 1.08994 * 109.47166 * 60.00239 * 12 10 9 34 34 H 1.09002 * 109.47301 * 300.00031 * 13 12 10 35 35 H 1.09003 * 109.47334 * 60.00264 * 13 12 10 36 36 H 1.09002 * 109.47153 * 300.00095 * 14 13 12 37 37 H 1.09005 * 109.47443 * 60.00044 * 14 13 12 38 38 H 1.09005 * 109.46572 * 299.99619 * 15 14 13 39 39 H 1.08994 * 109.47323 * 59.99854 * 15 14 13 40 40 H 0.97000 * 119.99818 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2256 0.0822 0.0005 6 6 3.5948 -1.1472 -0.0005 7 6 2.2089 -1.1954 0.0005 8 6 1.4830 -2.5162 0.0001 9 8 2.4496 -3.5997 0.0002 10 6 1.9628 -4.8506 0.0004 11 8 0.7685 -5.0341 0.0000 12 6 2.9058 -6.0261 0.0011 13 6 2.0997 -7.3265 0.0005 14 6 3.0571 -8.5200 0.0019 15 6 2.2510 -9.8204 0.0007 16 6 3.1940 -10.9959 0.0027 17 1 4.2615 -10.8320 0.0042 18 6 2.6940 -12.2809 0.0015 19 7 3.5169 -13.3067 0.0027 20 14 0.8476 -12.5646 -0.0018 21 1 0.3609 -12.6394 -1.4028 22 1 0.5413 -13.8384 0.6974 23 1 0.1730 -11.4414 0.6973 24 1 -0.3633 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8901 -0.5136 27 1 1.6675 2.1276 0.0004 28 1 5.3046 0.1284 0.0005 29 1 4.1736 -2.0589 -0.0009 30 1 0.8575 -2.5872 0.8899 31 1 0.8580 -2.5870 -0.8901 32 1 3.5343 -5.9883 -0.8886 33 1 3.5336 -5.9878 0.8913 34 1 1.4709 -7.3646 0.8901 35 1 1.4722 -7.3647 -0.8899 36 1 3.6862 -8.4821 -0.8874 37 1 3.6843 -8.4817 0.8926 38 1 1.6216 -9.8585 0.8899 39 1 1.6241 -9.8586 -0.8901 40 1 3.1651 -14.2107 0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859692442.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:15 Heat of formation + Delta-G solvation = -99.245977 kcal Electronic energy + Delta-G solvation = -19997.513581 eV Core-core repulsion = 16775.591610 eV Total energy + Delta-G solvation = -3221.921970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.80853 -41.07795 -37.98712 -36.66539 -35.12822 -34.63539 -33.18886 -32.03535 -29.20297 -28.06566 -27.43526 -24.48906 -23.47629 -22.56114 -21.89478 -21.46694 -18.93223 -18.67379 -18.13156 -17.89144 -17.21118 -16.62091 -16.37555 -16.25977 -15.96471 -15.50973 -14.83584 -14.63508 -14.42587 -14.29232 -13.86865 -13.83906 -13.71158 -13.64384 -13.48319 -12.98757 -12.87754 -12.44068 -12.34635 -12.14238 -12.09281 -11.75646 -11.73170 -11.38424 -11.32376 -11.23547 -10.75138 -10.49969 -10.47120 -9.88418 -8.28639 -6.31853 0.10768 0.17221 1.14427 1.35902 1.37513 1.49666 1.50255 2.36688 2.76168 3.06865 3.34118 3.56377 3.66542 3.83141 3.91126 3.96919 4.04678 4.08203 4.13146 4.22966 4.50779 4.55285 4.61343 4.68257 4.74286 4.75384 4.81249 4.85032 4.96046 5.10628 5.13937 5.18558 5.22441 5.29090 5.39412 5.60579 5.65802 5.69429 5.72841 6.30438 6.67382 6.76764 6.97982 7.32903 8.87912 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.044249 B = 0.002416 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.625021 B =11588.315536 C =12179.284563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.131 4.131 3 C 0.091 3.909 4 N -0.507 5.507 5 C 0.083 3.917 6 C -0.154 4.154 7 C -0.064 4.064 8 C 0.107 3.893 9 O -0.353 6.353 10 C 0.470 3.530 11 O -0.537 6.537 12 C -0.105 4.105 13 C -0.102 4.102 14 C -0.095 4.095 15 C -0.017 4.017 16 C -0.530 4.530 17 H 0.036 0.964 18 C 0.001 3.999 19 N -0.951 5.951 20 Si 0.949 3.051 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.249 1.249 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.069 0.931 27 H 0.180 0.820 28 H 0.177 0.823 29 H 0.152 0.848 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.016 0.984 39 H 0.015 0.985 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.726 30.849 0.018 31.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.133 4.133 3 C -0.066 4.066 4 N -0.216 5.216 5 C -0.073 4.073 6 C -0.174 4.174 7 C -0.072 4.072 8 C 0.034 3.966 9 O -0.270 6.270 10 C 0.315 3.685 11 O -0.427 6.427 12 C -0.143 4.143 13 C -0.140 4.140 14 C -0.132 4.132 15 C -0.055 4.055 16 C -0.568 4.568 17 H 0.055 0.945 18 C -0.195 4.195 19 N -0.592 5.592 20 Si 0.773 3.227 21 H -0.193 1.193 22 H -0.210 1.210 23 H -0.173 1.173 24 H 0.104 0.896 25 H 0.110 0.890 26 H 0.088 0.912 27 H 0.197 0.803 28 H 0.194 0.806 29 H 0.170 0.830 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.632 31.457 0.020 31.796 hybrid contribution -0.975 -1.573 -0.018 1.851 sum -5.608 29.884 0.002 30.405 Atomic orbital electron populations 1.20867 0.88264 1.04408 1.03809 1.20898 0.98905 0.92591 1.00862 1.23070 0.89696 0.98271 0.95570 1.67701 1.09252 1.32282 1.12397 1.23134 1.01573 0.87222 0.95390 1.22193 0.94533 1.00619 1.00058 1.20012 0.94744 0.93487 0.98947 1.21752 0.89546 0.81318 1.03969 1.86454 1.41041 1.15414 1.84105 1.24274 0.89132 0.84217 0.70923 1.90674 1.18940 1.86329 1.46709 1.21514 0.97286 0.87420 1.08031 1.21396 0.97826 0.92190 1.02590 1.21331 0.97574 0.92644 1.01683 1.19580 0.95804 0.93809 0.96292 1.21558 0.93995 0.91393 1.49894 0.94524 1.26031 1.03217 0.95932 0.94356 1.70068 1.37086 0.99170 1.52913 0.85674 0.79892 0.78036 0.79147 1.19255 1.20977 1.17291 0.89583 0.88978 0.91197 0.80319 0.80616 0.83043 0.88956 0.88919 0.85396 0.85412 0.92224 0.92144 0.92218 0.92233 0.96583 0.96677 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 9.66 71.24 0.69 -0.31 16 2 C -0.13 -1.81 5.90 -19.78 -0.12 -1.93 16 3 C 0.09 1.33 10.86 84.68 0.92 2.25 16 4 N -0.51 -9.36 10.36 -195.85 -2.03 -11.39 16 5 C 0.08 1.33 11.18 84.67 0.95 2.28 16 6 C -0.15 -2.50 9.45 22.36 0.21 -2.29 16 7 C -0.06 -1.04 5.92 -19.67 -0.12 -1.16 16 8 C 0.11 1.83 4.67 71.24 0.33 2.17 16 9 O -0.35 -6.95 8.80 -51.39 -0.45 -7.41 16 10 C 0.47 10.89 7.96 71.24 0.57 11.45 16 11 O -0.54 -15.85 15.73 21.97 0.35 -15.51 16 12 C -0.11 -2.19 5.81 29.85 0.17 -2.02 16 13 C -0.10 -2.96 4.50 30.59 0.14 -2.83 16 14 C -0.09 -3.41 5.15 30.59 0.16 -3.25 16 15 C -0.02 -0.81 4.04 29.85 0.12 -0.69 16 16 C -0.53 -30.60 9.66 25.60 0.25 -30.36 16 17 H 0.04 2.29 7.99 -2.91 -0.02 2.27 16 18 C 0.00 0.07 5.47 84.66 0.46 0.53 16 19 N -0.95 -60.06 13.96 21.45 0.30 -59.76 16 20 Si 0.95 44.98 27.47 68.60 1.88 46.87 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 23 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 24 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.09 0.48 8.09 -2.38 -0.02 0.46 16 26 H 0.07 0.62 6.78 -2.39 -0.02 0.61 16 27 H 0.18 1.59 8.06 -2.91 -0.02 1.56 16 28 H 0.18 1.94 8.06 -2.91 -0.02 1.91 16 29 H 0.15 2.19 7.10 -2.91 -0.02 2.17 16 30 H 0.09 1.52 8.13 -2.39 -0.02 1.50 16 31 H 0.09 1.52 7.58 -2.39 -0.02 1.50 16 32 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.06 1.82 8.10 -2.39 -0.02 1.80 16 35 H 0.06 1.83 8.10 -2.39 -0.02 1.81 16 36 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 38 H 0.02 0.74 7.20 -2.38 -0.02 0.72 16 39 H 0.01 0.68 7.57 -2.39 -0.02 0.67 16 40 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -72.63 339.09 5.74 -66.89 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 0.96 Total: 6.46 kcal Atomic # 6 Polarization: -30.88 SS G_CDS: 4.73 Total: -26.15 kcal Atomic # 7 Polarization: -69.42 SS G_CDS: -1.73 Total: -71.15 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.11 Total: -22.91 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.87 kcal Total: -72.63 5.74 -66.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859692442.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.357 kcal (2) G-P(sol) polarization free energy of solvation -72.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds