Wall clock time and date at job start Mon Mar 30 2020 02:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00183 * 2 1 4 4 C 1.53001 * 113.38191 * 46.91456 * 3 2 1 5 5 C 1.53505 * 114.17080 * 179.97438 * 3 2 1 6 6 N 1.47478 * 87.93340 * 87.61984 * 5 3 2 7 7 C 1.46903 * 110.99914 * 138.70232 * 6 5 3 8 8 C 1.50696 * 109.47151 * 170.00265 * 7 6 5 9 9 C 1.38302 * 119.93469 * 89.99796 * 8 7 6 10 10 C 1.38094 * 120.07461 * 180.02562 * 9 8 7 11 11 C 1.38878 * 119.92859 * 0.27306 * 10 9 8 12 12 O 1.35748 * 120.07147 * 179.72501 * 11 10 9 13 13 C 1.34830 * 117.00101 * 354.46447 * 12 11 10 14 14 H 1.07999 * 119.99626 * 5.05831 * 13 12 11 15 15 C 1.38650 * 120.00326 * 185.05731 * 13 12 11 16 16 N 1.31562 * 120.00209 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00130 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47103 * 89.99872 * 17 15 13 19 19 H 1.48501 * 109.47279 * 210.00176 * 17 15 13 20 20 H 1.48498 * 109.46747 * 330.00169 * 17 15 13 21 21 C 1.38878 * 119.86109 * 359.47415 * 11 10 9 22 22 C 1.38104 * 119.93072 * 0.53047 * 21 11 10 23 23 C 1.47482 * 87.83652 * 27.01066 * 6 5 3 24 24 H 1.09005 * 109.47394 * 300.00546 * 1 2 3 25 25 H 1.09004 * 109.47086 * 60.00201 * 1 2 3 26 26 H 1.09003 * 109.47259 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47096 * 193.08171 * 4 3 2 28 28 H 1.08996 * 109.47380 * 313.08388 * 4 3 2 29 29 H 1.09009 * 109.47116 * 73.08370 * 4 3 2 30 30 H 1.09002 * 113.47607 * 332.85199 * 5 3 2 31 31 H 1.09002 * 113.47556 * 202.38765 * 5 3 2 32 32 H 1.08993 * 109.47415 * 49.99909 * 7 6 5 33 33 H 1.09004 * 109.46775 * 290.00002 * 7 6 5 34 34 H 1.08002 * 119.96329 * 0.02562 * 9 8 7 35 35 H 1.08000 * 120.04048 * 180.02562 * 10 9 8 36 36 H 0.96992 * 120.00121 * 180.02562 * 16 15 13 37 37 H 1.08003 * 120.03575 * 180.25499 * 21 11 10 38 38 H 1.07996 * 119.96455 * 179.74788 * 22 21 11 39 39 H 1.09000 * 113.47783 * 87.75023 * 23 6 5 40 40 H 1.09002 * 113.47802 * 218.22311 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.3809 2.2503 1.0257 5 6 3.5453 1.3100 0.0006 6 7 3.4929 1.2483 -1.4719 7 6 4.5013 2.1321 -2.0720 8 6 4.5874 1.8637 -3.5524 9 6 3.7830 2.5682 -4.4295 10 6 3.8591 2.3242 -5.7866 11 6 4.7407 1.3660 -6.2699 12 8 4.8139 1.1199 -7.6028 13 6 3.9250 1.7556 -8.3925 14 1 3.2523 2.4865 -7.9687 15 6 3.8745 1.4710 -9.7485 16 7 3.0074 2.0917 -10.5191 17 14 5.0376 0.2063 -10.4815 18 1 4.4054 -1.1364 -10.4292 19 1 5.3291 0.5616 -11.8936 20 1 6.3027 0.1884 -9.7042 21 6 5.5509 0.6639 -5.3871 22 6 5.4700 0.9126 -4.0310 23 6 2.1808 1.9175 -1.3975 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6979 3.2728 0.8202 28 1 0.2948 2.1865 0.9600 29 1 1.7018 1.9649 2.0276 30 1 3.9820 0.4217 0.4572 31 1 3.9767 2.2357 0.3814 32 1 5.4708 1.9427 -1.6114 33 1 4.2175 3.1716 -1.9072 34 1 3.0945 3.3101 -4.0527 35 1 3.2310 2.8750 -6.4710 36 1 2.9718 1.8924 -11.4676 37 1 6.2404 -0.0789 -5.7602 38 1 6.0969 0.3640 -3.3437 39 1 2.2479 3.0054 -1.3897 40 1 1.4609 1.5441 -2.1259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137114240.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:11 Heat of formation + Delta-G solvation = -21.701520 kcal Electronic energy + Delta-G solvation = -21037.938132 eV Core-core repulsion = 17819.378742 eV Total energy + Delta-G solvation = -3218.559390 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.67534 -40.79180 -38.61080 -37.49586 -34.51252 -33.05712 -31.82802 -30.79119 -28.43029 -27.64582 -27.06557 -26.34928 -23.73089 -23.57654 -21.74148 -20.59542 -19.81692 -19.10880 -17.41359 -16.95571 -16.84517 -16.48020 -16.41435 -15.78940 -15.71670 -15.50568 -15.39688 -15.02041 -14.64251 -14.31102 -14.17942 -14.06611 -13.60562 -13.33352 -13.13728 -13.04477 -12.79330 -12.58724 -12.46718 -12.30464 -12.05704 -11.94345 -11.85099 -11.28397 -11.26445 -10.90731 -10.45397 -9.81738 -9.73500 -8.98788 -8.51342 -6.23929 0.56589 0.62681 1.30052 1.34562 1.51022 2.27271 2.62189 2.73787 2.98621 3.14178 3.29116 3.41507 3.76742 3.92459 4.01779 4.16238 4.24643 4.30673 4.40225 4.48602 4.53140 4.53703 4.58169 4.66001 4.73156 4.75989 4.79269 4.81920 4.93740 4.95565 4.98595 5.22169 5.23194 5.30912 5.44362 5.57255 5.75364 5.82304 5.90167 6.10755 6.25239 6.34482 6.83041 7.57835 8.60429 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028783 B = 0.003450 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.574901 B = 8115.161734 C = 8439.143612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.380 6.380 3 C 0.082 3.918 4 C -0.164 4.164 5 C 0.015 3.985 6 N -0.483 5.483 7 C 0.076 3.924 8 C -0.141 4.141 9 C -0.066 4.066 10 C -0.238 4.238 11 C 0.119 3.881 12 O -0.246 6.246 13 C -0.400 4.400 14 H 0.079 0.921 15 C 0.010 3.990 16 N -0.924 5.924 17 Si 0.971 3.029 18 H -0.266 1.266 19 H -0.265 1.265 20 H -0.263 1.263 21 C -0.193 4.193 22 C -0.055 4.055 23 C -0.025 4.025 24 H 0.065 0.935 25 H 0.038 0.962 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.130 0.870 35 H 0.107 0.893 36 H 0.285 0.715 37 H 0.127 0.873 38 H 0.149 0.851 39 H 0.094 0.906 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.953 0.428 25.157 25.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.298 6.298 3 C 0.041 3.959 4 C -0.222 4.222 5 C -0.113 4.113 6 N -0.205 5.205 7 C -0.052 4.052 8 C -0.142 4.142 9 C -0.085 4.085 10 C -0.257 4.257 11 C 0.070 3.930 12 O -0.154 6.154 13 C -0.477 4.477 14 H 0.097 0.903 15 C -0.188 4.188 16 N -0.564 5.564 17 Si 0.793 3.207 18 H -0.191 1.191 19 H -0.190 1.190 20 H -0.187 1.187 21 C -0.212 4.212 22 C -0.073 4.073 23 C -0.155 4.155 24 H 0.083 0.917 25 H 0.057 0.943 26 H 0.110 0.890 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.126 0.874 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.147 0.853 35 H 0.125 0.875 36 H 0.095 0.905 37 H 0.145 0.855 38 H 0.167 0.833 39 H 0.112 0.888 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.667 -0.473 24.457 24.470 hybrid contribution -0.355 0.759 -0.906 1.234 sum -1.022 0.287 23.551 23.575 Atomic orbital electron populations 1.22930 0.80062 1.03536 1.00828 1.87938 1.20998 1.26282 1.94631 1.22656 0.94667 0.84301 0.94253 1.22201 1.01921 0.99225 0.98856 1.24057 0.93856 1.03691 0.89726 1.69009 1.02286 1.40384 1.08795 1.21494 0.97812 0.95670 0.90197 1.19620 0.99405 0.99653 0.95545 1.20871 0.97649 0.98692 0.91270 1.21245 1.04235 1.03025 0.97186 1.19658 0.95353 0.94576 0.83453 1.83513 1.53218 1.64174 1.14473 1.20707 1.14702 1.21635 0.90633 0.90301 1.25284 0.98650 0.99783 0.95110 1.69727 1.36409 1.43444 1.06867 0.85212 0.79292 0.78492 0.77673 1.19148 1.18985 1.18736 1.20521 1.03711 1.03947 0.93049 1.20913 0.97471 0.95870 0.93073 1.24642 0.93611 0.98927 0.98273 0.91708 0.94326 0.88951 0.89693 0.91040 0.90398 0.89414 0.87437 0.88623 0.91621 0.85257 0.87544 0.90545 0.85457 0.83349 0.88791 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.36 113.37 1.17 1.54 16 2 O -0.38 -8.68 10.71 -148.98 -1.60 -10.28 16 3 C 0.08 1.47 1.47 -10.45 -0.02 1.45 16 4 C -0.16 -1.83 9.02 71.98 0.65 -1.18 16 5 C 0.01 0.26 7.11 83.57 0.59 0.85 16 6 N -0.48 -11.53 6.32 -932.83 -5.89 -17.42 16 7 C 0.08 1.71 4.94 85.56 0.42 2.13 16 8 C -0.14 -4.45 5.47 -19.84 -0.11 -4.56 16 9 C -0.07 -2.39 9.69 22.25 0.22 -2.18 16 10 C -0.24 -10.91 9.17 22.39 0.21 -10.71 16 11 C 0.12 5.81 6.65 22.58 0.15 5.96 16 12 O -0.25 -13.88 8.59 -22.72 -0.20 -14.08 16 13 C -0.40 -24.32 9.95 67.92 0.68 -23.65 16 14 H 0.08 5.02 5.44 -2.91 -0.02 5.00 16 15 C 0.01 0.59 5.49 84.83 0.47 1.06 16 16 N -0.92 -56.18 13.96 21.61 0.30 -55.88 16 17 Si 0.97 46.54 28.62 68.60 1.96 48.50 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 20 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 21 C -0.19 -7.82 9.99 22.39 0.22 -7.59 16 22 C -0.05 -1.81 9.69 22.25 0.22 -1.60 16 23 C -0.03 -0.54 7.13 83.58 0.60 0.06 16 24 H 0.06 0.77 6.37 -2.38 -0.02 0.75 16 25 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.08 0.72 7.90 -2.39 -0.02 0.70 16 28 H 0.07 0.74 6.13 -2.39 -0.01 0.72 16 29 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.11 1.24 7.87 -2.39 -0.02 1.22 16 32 H 0.10 1.80 8.02 -2.39 -0.02 1.78 16 33 H 0.07 1.25 7.24 -2.38 -0.02 1.23 16 34 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 35 H 0.11 5.35 5.64 -2.91 -0.02 5.33 16 36 H 0.28 15.85 8.31 -92.71 -0.77 15.08 16 37 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 38 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 39 H 0.09 1.59 7.21 -2.39 -0.02 1.57 16 40 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -71.45 330.65 1.08 -70.38 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 1.03 Total: 17.19 kcal Atomic # 6 Polarization: -43.87 SS G_CDS: 5.46 Total: -38.41 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -5.59 Total: -73.31 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -1.79 Total: -24.35 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.96 Total: 48.50 kcal Total: -71.45 1.08 -70.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137114240.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.675 kcal (2) G-P(sol) polarization free energy of solvation -71.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds