Wall clock time and date at job start Mon Mar 30 2020 01:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38149 * 120.00188 * 2 1 4 4 C 1.50703 * 120.00283 * 0.02562 * 3 2 1 5 5 C 1.38670 * 119.99835 * 180.29446 * 3 2 1 6 6 O 1.35986 * 120.00270 * 179.72397 * 5 3 2 7 7 C 1.42902 * 117.00314 * 174.45905 * 6 5 3 8 8 H 1.09004 * 110.91208 * 321.60641 * 7 6 5 9 9 C 1.55446 * 111.11776 * 197.61169 * 7 6 5 10 10 C 1.54318 * 102.96624 * 206.46368 * 9 7 6 11 11 N 1.47022 * 107.27464 * 22.19454 * 10 9 7 12 12 C 1.36940 * 125.65056 * 181.03827 * 11 10 9 13 13 H 1.07999 * 119.99885 * 180.02562 * 12 11 10 14 14 C 1.38808 * 119.99764 * 0.02562 * 12 11 10 15 15 N 1.31622 * 120.00161 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99958 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47137 * 89.99739 * 16 14 12 18 18 H 1.48499 * 109.47139 * 210.00362 * 16 14 12 19 19 H 1.48500 * 109.46964 * 330.00203 * 16 14 12 20 20 C 1.47423 * 108.70139 * 1.05654 * 11 10 9 21 21 C 1.38721 * 120.00201 * 359.45221 * 5 3 2 22 22 C 1.38112 * 119.99927 * 0.27428 * 21 5 3 23 23 C 1.38673 * 119.99525 * 179.74593 * 2 1 3 24 24 O 1.35984 * 120.00460 * 0.02562 * 23 2 1 25 25 H 1.08993 * 109.47565 * 270.25620 * 1 2 3 26 26 H 1.09001 * 109.46988 * 30.25304 * 1 2 3 27 27 H 1.09004 * 109.47634 * 150.24862 * 1 2 3 28 28 H 1.08993 * 109.46772 * 270.28221 * 4 3 2 29 29 H 1.09004 * 109.47109 * 30.27534 * 4 3 2 30 30 H 1.09000 * 109.47331 * 150.27317 * 4 3 2 31 31 H 1.08996 * 110.70852 * 88.09214 * 9 7 6 32 32 H 1.08998 * 110.85499 * 324.90603 * 9 7 6 33 33 H 1.08999 * 109.88328 * 262.77284 * 10 9 7 34 34 H 1.09004 * 109.88124 * 141.60559 * 10 9 7 35 35 H 0.97005 * 119.99888 * 179.97438 * 15 14 12 36 36 H 1.09005 * 110.36882 * 94.71196 * 20 11 10 37 37 H 1.09003 * 110.36792 * 216.92172 * 20 11 10 38 38 H 1.08000 * 120.00415 * 180.29377 * 21 5 3 39 39 H 1.07997 * 120.00332 * 180.02562 * 22 21 5 40 40 H 0.96705 * 114.00049 * 269.98078 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1964 0.0000 4 6 1.4444 2.5016 0.0006 5 6 3.5845 1.1963 -0.0062 6 8 4.2645 2.3739 -0.0118 7 6 5.6870 2.3023 0.1049 8 1 5.9811 1.5187 0.8033 9 6 6.2844 3.6750 0.5235 10 6 7.7157 3.6193 -0.0507 11 7 7.7121 2.6285 -1.1369 12 6 8.7964 2.2672 -1.8913 13 1 8.6898 1.5264 -2.6698 14 6 10.0323 2.8532 -1.6552 15 7 10.1623 3.7558 -0.7060 16 14 11.5113 2.3610 -2.6847 17 1 11.5995 3.2415 -3.8772 18 1 12.7475 2.5005 -1.8737 19 1 11.3626 0.9495 -3.1215 20 6 6.3477 2.0887 -1.2798 21 6 4.2781 -0.0050 -0.0009 22 6 3.5875 -1.2011 0.0048 23 6 2.2003 -1.2010 0.0053 24 8 1.5204 -2.3786 0.0100 25 1 -0.3634 0.0046 1.0276 26 1 -0.3633 0.8877 -0.5178 27 1 -0.3634 -0.8922 -0.5100 28 1 1.2580 2.8139 -1.0269 29 1 0.4943 2.3724 0.5190 30 1 2.0358 3.2623 0.5101 31 1 6.3078 3.7703 1.6090 32 1 5.7217 4.4952 0.0777 33 1 8.4155 3.3140 0.7272 34 1 7.9965 4.5972 -0.4420 35 1 11.0261 4.1650 -0.5408 36 1 5.8020 2.6353 -2.0489 37 1 6.3834 1.0268 -1.5234 38 1 5.3581 -0.0051 -0.0009 39 1 4.1275 -2.1364 0.0094 40 1 1.3236 -2.7157 0.8948 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225776181.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:33 Heat of formation + Delta-G solvation = -34.809454 kcal Electronic energy + Delta-G solvation = -21560.746443 eV Core-core repulsion = 18341.618650 eV Total energy + Delta-G solvation = -3219.127793 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.46119 -38.75489 -36.89145 -35.67349 -33.31666 -32.34070 -30.46158 -29.24498 -27.49410 -27.06902 -26.24742 -24.53240 -21.93852 -21.50895 -20.20317 -19.84114 -17.99390 -17.63305 -17.08566 -16.36128 -15.42832 -15.10989 -14.69835 -14.43475 -14.17985 -13.66932 -13.52680 -13.10049 -13.06039 -13.00936 -12.75238 -12.40188 -12.10298 -11.99145 -11.88436 -11.69926 -11.38780 -11.13959 -10.98867 -10.82594 -10.36621 -10.34406 -10.19971 -10.04987 -9.87624 -9.71430 -8.66002 -8.63523 -7.81831 -6.91482 -5.76943 -3.11599 1.27540 1.36484 3.37541 3.40405 3.44123 3.46315 3.59587 4.23181 4.46317 4.77627 4.81844 5.06164 5.15657 5.20096 5.29030 5.35283 5.46927 5.50245 5.57393 5.63215 5.67549 5.71705 5.73832 5.76859 5.93577 6.09224 6.16858 6.30031 6.36171 6.40155 6.41473 6.50587 6.56663 6.63952 6.77882 7.48351 7.51954 7.57309 7.71352 7.78041 8.18275 9.15255 9.74885 10.39255 11.34837 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029352 B = 0.003960 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.718211 B = 7068.754538 C = 7734.834876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.078 4.078 3 C -0.112 4.112 4 C -0.104 4.104 5 C 0.138 3.862 6 O -0.301 6.301 7 C 0.065 3.935 8 H 0.079 0.921 9 C -0.134 4.134 10 C 0.178 3.822 11 N -0.602 5.602 12 C -0.231 4.231 13 H 0.079 0.921 14 C -0.006 4.006 15 N -0.922 5.922 16 Si 0.914 3.086 17 H -0.288 1.288 18 H -0.290 1.290 19 H -0.281 1.281 20 C 0.118 3.882 21 C -0.193 4.193 22 C -0.104 4.104 23 C 0.055 3.945 24 O -0.495 6.495 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.253 0.747 36 H 0.030 0.970 37 H 0.043 0.957 38 H 0.138 0.862 39 H 0.128 0.872 40 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.740 -6.361 5.305 19.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.078 4.078 3 C -0.113 4.113 4 C -0.160 4.160 5 C 0.092 3.908 6 O -0.214 6.214 7 C 0.008 3.992 8 H 0.097 0.903 9 C -0.172 4.172 10 C 0.054 3.946 11 N -0.330 5.330 12 C -0.359 4.359 13 H 0.097 0.903 14 C -0.203 4.203 15 N -0.569 5.569 16 Si 0.744 3.256 17 H -0.215 1.215 18 H -0.216 1.216 19 H -0.206 1.206 20 C -0.009 4.009 21 C -0.212 4.212 22 C -0.123 4.123 23 C 0.011 3.989 24 O -0.304 6.304 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.061 0.939 38 H 0.156 0.844 39 H 0.146 0.854 40 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -17.537 -6.036 4.665 19.124 hybrid contribution 1.121 -0.543 -0.031 1.246 sum -16.415 -6.579 4.634 18.281 Atomic orbital electron populations 1.20696 0.90638 1.03230 1.02155 1.19785 0.96316 0.91340 1.00384 1.18953 0.90382 0.95526 1.06454 1.20613 0.99210 0.93893 1.02317 1.18861 0.91106 0.85430 0.95378 1.86104 1.21129 1.27193 1.86947 1.23901 0.76060 1.00112 0.99129 0.90276 1.23058 0.99041 0.94549 1.00535 1.21209 0.88857 0.94078 0.90492 1.44341 1.03386 1.45970 1.39329 1.19066 0.86107 1.19133 1.11605 0.90303 1.24813 0.97682 0.98876 0.98891 1.69945 1.23548 1.30261 1.33189 0.86085 0.82181 0.78016 0.79279 1.21498 1.21591 1.20627 1.21971 0.87729 0.97524 0.93631 1.21325 1.01058 0.91566 1.07244 1.21163 0.93243 0.98237 0.99610 1.18063 0.89612 0.84687 1.06525 1.84854 1.76446 1.36218 1.32895 0.91350 0.91157 0.90893 0.91385 0.91765 0.90885 0.91384 0.91126 0.93052 0.93214 0.93620 0.95261 0.93920 0.84389 0.85399 0.76543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 8.96 36.01 0.32 -0.70 16 2 C -0.08 -0.96 5.89 -104.49 -0.62 -1.58 16 3 C -0.11 -1.54 5.89 -104.49 -0.62 -2.16 16 4 C -0.10 -1.19 8.96 36.01 0.32 -0.87 16 5 C 0.14 2.17 6.61 -39.24 -0.26 1.91 16 6 O -0.30 -5.15 9.00 -19.70 -0.18 -5.33 16 7 C 0.06 1.19 2.83 -24.43 -0.07 1.12 16 8 H 0.08 1.40 6.61 -51.93 -0.34 1.06 16 9 C -0.13 -2.52 6.70 -24.74 -0.17 -2.69 16 10 C 0.18 4.29 5.37 -3.07 -0.02 4.27 16 11 N -0.60 -15.47 3.40 -170.08 -0.58 -16.05 16 12 C -0.23 -6.45 10.28 -15.06 -0.15 -6.61 16 13 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 14 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 15 N -0.92 -26.80 10.31 55.49 0.57 -26.22 16 16 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C 0.12 2.53 6.59 -2.53 -0.02 2.51 16 21 C -0.19 -2.91 8.72 -39.45 -0.34 -3.25 16 22 C -0.10 -1.40 9.98 -39.45 -0.39 -1.79 16 23 C 0.06 0.71 6.68 -39.24 -0.26 0.44 16 24 O -0.50 -5.34 12.54 -19.69 -0.25 -5.58 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.60 6.72 -51.93 -0.35 0.25 16 27 H 0.07 0.67 7.53 -51.93 -0.39 0.28 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.59 6.72 -51.93 -0.35 0.24 16 30 H 0.07 0.89 7.53 -51.93 -0.39 0.50 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.05 1.34 7.38 -51.93 -0.38 0.96 16 34 H 0.05 1.32 7.51 -51.93 -0.39 0.93 16 35 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.04 0.89 7.25 -51.93 -0.38 0.51 16 38 H 0.14 2.14 5.30 -52.49 -0.28 1.86 16 39 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.38 2.29 9.06 45.56 0.41 2.71 16 LS Contribution 321.59 15.07 4.85 4.85 Total: -1.00 -31.31 321.59 -7.89 -39.20 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -4.92 Total: 1.82 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -2.36 Total: -9.67 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: -0.01 Total: -42.27 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -0.42 Total: -10.91 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.31 -7.89 -39.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225776181.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.392 kcal (2) G-P(sol) polarization free energy of solvation -31.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds