Wall clock time and date at job start Mon Mar 30 2020 01:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38161 * 119.99938 * 2 1 4 4 C 1.50697 * 119.99927 * 0.04189 * 3 2 1 5 5 C 1.38671 * 120.00256 * 180.02562 * 3 2 1 6 6 O 1.35982 * 120.00391 * 179.97438 * 5 3 2 7 7 C 1.42892 * 117.00216 * 185.72952 * 6 5 3 8 8 H 1.09000 * 110.64036 * 32.94743 * 7 6 5 9 9 C 1.55157 * 110.71949 * 156.08968 * 7 6 5 10 10 C 1.54913 * 101.58028 * 154.04501 * 9 7 6 11 11 N 1.47424 * 104.83216 * 322.99147 * 10 9 7 12 12 C 1.36944 * 125.64768 * 204.09609 * 11 10 9 13 13 H 1.08000 * 120.00088 * 6.55999 * 12 11 10 14 14 C 1.38811 * 119.99603 * 186.56100 * 12 11 10 15 15 N 1.31614 * 120.00231 * 7.41867 * 14 12 11 16 16 Si 1.86807 * 119.99696 * 187.41843 * 14 12 11 17 17 H 1.48502 * 109.46750 * 265.01816 * 16 14 12 18 18 H 1.48498 * 109.46894 * 25.01287 * 16 14 12 19 19 H 1.48493 * 109.46954 * 145.01803 * 16 14 12 20 20 C 1.47024 * 108.70580 * 24.35578 * 11 10 9 21 21 C 1.38729 * 119.99746 * 0.27031 * 5 3 2 22 22 C 1.38109 * 119.99910 * 359.45571 * 21 5 3 23 23 C 1.38669 * 120.00494 * 180.02562 * 2 1 3 24 24 O 1.35989 * 119.99945 * 359.96070 * 23 2 1 25 25 H 1.08991 * 109.46874 * 90.00255 * 1 2 3 26 26 H 1.09000 * 109.46645 * 210.00021 * 1 2 3 27 27 H 1.09003 * 109.47300 * 329.99686 * 1 2 3 28 28 H 1.08999 * 109.47492 * 269.98536 * 4 3 2 29 29 H 1.09001 * 109.47215 * 29.97986 * 4 3 2 30 30 H 1.08999 * 109.47517 * 149.97883 * 4 3 2 31 31 H 1.09002 * 111.00739 * 35.97325 * 9 7 6 32 32 H 1.08993 * 111.00717 * 272.11318 * 9 7 6 33 33 H 1.08997 * 110.36641 * 204.15699 * 10 9 7 34 34 H 1.08994 * 110.46468 * 81.88033 * 10 9 7 35 35 H 0.97003 * 119.99696 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.88064 * 118.12678 * 20 11 10 37 37 H 1.09000 * 109.88022 * 239.29814 * 20 11 10 38 38 H 1.08000 * 119.99410 * 179.70438 * 21 5 3 39 39 H 1.07995 * 119.99716 * 180.27655 * 22 21 5 40 40 H 0.96698 * 114.00362 * 89.98996 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1965 0.0000 4 6 1.4443 2.5016 0.0010 5 6 3.5845 1.1966 -0.0005 6 8 4.2644 2.3742 -0.0011 7 6 5.6859 2.3026 -0.1287 8 1 5.9734 1.4571 -0.7536 9 6 6.2528 3.6277 -0.7032 10 6 7.6964 3.6178 -0.1412 11 7 7.5717 3.0399 1.2093 12 6 8.4422 3.2414 2.2471 13 1 9.2490 3.9521 2.1450 14 6 8.2875 2.5322 3.4303 15 7 7.3990 1.5641 3.5059 16 14 9.3404 2.9518 4.9152 17 1 10.5266 2.0590 4.9489 18 1 9.7870 4.3649 4.8219 19 1 8.5447 2.7648 6.1549 20 6 6.3614 2.2065 1.2556 21 6 4.2782 -0.0048 -0.0067 22 6 3.5877 -1.2009 -0.0010 23 6 2.2005 -1.2008 -0.0005 24 8 1.5206 -2.3786 -0.0003 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 1.2622 2.8168 -1.0264 29 1 0.4920 2.3710 0.5150 30 1 2.0335 3.2610 0.5150 31 1 5.6943 4.4861 -0.3299 32 1 6.2578 3.6107 -1.7930 33 1 8.0885 4.6332 -0.0846 34 1 8.3425 2.9966 -0.7614 35 1 7.2913 1.0683 4.3327 36 1 6.6317 1.1720 1.4674 37 1 5.6837 2.5795 2.0235 38 1 5.3582 -0.0047 -0.0120 39 1 4.1277 -2.1361 -0.0013 40 1 1.3233 -2.7191 -0.8835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225776188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:35 Heat of formation + Delta-G solvation = -32.861523 kcal Electronic energy + Delta-G solvation = -21793.171896 eV Core-core repulsion = 18574.128572 eV Total energy + Delta-G solvation = -3219.043324 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.31030 -38.63912 -36.83149 -35.56237 -33.17735 -32.39551 -30.39117 -28.95925 -27.58521 -26.92894 -26.17310 -24.50763 -21.84264 -21.42936 -20.26682 -19.67670 -17.84412 -17.49138 -16.97793 -16.35579 -15.42870 -15.21688 -14.49889 -14.30320 -13.99366 -13.69738 -13.39023 -13.03260 -12.95565 -12.85709 -12.57960 -12.40369 -11.97605 -11.83973 -11.74736 -11.54358 -11.26558 -11.14202 -11.07622 -10.81863 -10.68206 -10.27831 -10.05764 -9.91281 -9.85745 -9.60877 -8.67008 -8.49155 -7.64533 -6.88455 -5.73751 -3.10610 1.44058 1.52298 3.39099 3.44288 3.47004 3.58614 3.76271 4.35816 4.48227 4.92881 4.96079 5.13310 5.19723 5.35180 5.38445 5.45693 5.49145 5.54206 5.61782 5.72177 5.76209 5.82399 5.85655 5.93063 6.02585 6.08034 6.18826 6.27130 6.38459 6.52815 6.55012 6.59111 6.65747 6.79772 6.88107 7.30170 7.51606 7.71794 7.75005 7.93389 8.20227 9.15510 9.77287 10.41490 11.36588 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021388 B = 0.004654 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.831844 B = 6014.747272 C = 6590.877071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.079 4.079 3 C -0.114 4.114 4 C -0.104 4.104 5 C 0.143 3.857 6 O -0.300 6.300 7 C 0.053 3.947 8 H 0.073 0.927 9 C -0.124 4.124 10 C 0.134 3.866 11 N -0.602 5.602 12 C -0.233 4.233 13 H 0.080 0.920 14 C -0.006 4.006 15 N -0.919 5.919 16 Si 0.912 3.088 17 H -0.288 1.288 18 H -0.280 1.280 19 H -0.290 1.290 20 C 0.160 3.840 21 C -0.188 4.188 22 C -0.103 4.103 23 C 0.053 3.947 24 O -0.495 6.495 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.022 0.978 35 H 0.254 0.746 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.138 0.862 39 H 0.127 0.873 40 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.932 -2.870 -11.212 16.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.079 4.079 3 C -0.115 4.115 4 C -0.161 4.161 5 C 0.096 3.904 6 O -0.213 6.213 7 C -0.004 4.004 8 H 0.091 0.909 9 C -0.162 4.162 10 C 0.008 3.992 11 N -0.330 5.330 12 C -0.361 4.361 13 H 0.098 0.902 14 C -0.203 4.203 15 N -0.566 5.566 16 Si 0.743 3.257 17 H -0.216 1.216 18 H -0.206 1.206 19 H -0.216 1.216 20 C 0.035 3.965 21 C -0.207 4.207 22 C -0.121 4.121 23 C 0.009 3.991 24 O -0.304 6.304 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.156 0.844 39 H 0.145 0.855 40 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -11.936 -2.675 -10.352 16.025 hybrid contribution 0.818 -0.231 0.382 0.932 sum -11.118 -2.906 -9.970 15.213 Atomic orbital electron populations 1.20722 0.90770 1.03221 1.02049 1.19745 0.96222 0.91371 1.00592 1.18912 0.90391 0.95471 1.06705 1.20638 0.99412 0.94076 1.01958 1.18828 0.91054 0.85425 0.95046 1.86085 1.21070 1.27202 1.86901 1.23993 0.77028 0.98714 1.00666 0.90941 1.22833 0.97610 0.96733 0.99073 1.21571 0.92821 0.97337 0.87512 1.44355 1.25734 1.55743 1.07188 1.19063 1.07181 1.18727 0.91115 0.90197 1.24833 0.99314 0.97689 0.98476 1.69926 1.37122 1.23168 1.26367 0.86096 0.79315 0.77865 0.82465 1.21570 1.20558 1.21586 1.21627 0.87787 0.97238 0.89875 1.21284 1.01045 0.91529 1.06800 1.21137 0.93201 0.98229 0.99572 1.18042 0.89612 0.84611 1.06817 1.84864 1.76480 1.36237 1.32775 0.91449 0.91008 0.91036 0.91648 0.91606 0.90877 0.90413 0.91418 0.93494 0.96056 0.93605 0.91710 0.93910 0.84411 0.85474 0.76769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.38 36.01 0.34 -0.84 16 2 C -0.08 -1.10 5.89 -104.49 -0.62 -1.72 16 3 C -0.11 -1.76 5.89 -104.49 -0.62 -2.38 16 4 C -0.10 -1.36 9.38 36.00 0.34 -1.02 16 5 C 0.14 2.51 6.65 -39.24 -0.26 2.25 16 6 O -0.30 -5.67 8.92 -19.68 -0.18 -5.84 16 7 C 0.05 1.02 2.73 -24.89 -0.07 0.95 16 8 H 0.07 1.30 6.25 -51.93 -0.32 0.98 16 9 C -0.12 -2.19 6.81 -24.58 -0.17 -2.35 16 10 C 0.13 2.73 7.23 -2.53 -0.02 2.71 16 11 N -0.60 -15.51 3.39 -170.06 -0.58 -16.08 16 12 C -0.23 -6.52 10.26 -15.06 -0.15 -6.68 16 13 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 14 C -0.01 -0.18 5.45 -17.43 -0.09 -0.28 16 15 N -0.92 -27.34 10.48 55.49 0.58 -26.76 16 16 Si 0.91 22.24 29.56 -169.99 -5.02 17.22 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 C 0.16 3.94 4.99 -3.06 -0.02 3.92 16 21 C -0.19 -3.20 8.90 -39.45 -0.35 -3.55 16 22 C -0.10 -1.57 9.98 -39.45 -0.39 -1.96 16 23 C 0.05 0.77 6.67 -39.24 -0.26 0.51 16 24 O -0.50 -6.03 12.54 -19.70 -0.25 -6.27 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.75 7.53 -51.93 -0.39 0.36 16 27 H 0.07 0.70 5.95 -51.93 -0.31 0.39 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.72 5.95 -51.93 -0.31 0.42 16 30 H 0.07 1.05 7.53 -51.93 -0.39 0.66 16 31 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.06 1.76 6.66 -51.93 -0.35 1.41 16 37 H 0.04 1.20 7.83 -51.93 -0.41 0.79 16 38 H 0.14 2.42 5.61 -52.49 -0.29 2.12 16 39 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.38 2.71 9.06 45.56 0.41 3.13 16 LS Contribution 321.85 15.07 4.85 4.85 Total: -1.00 -32.29 321.85 -7.80 -40.09 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.86 Total: 3.24 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -2.34 Total: -10.44 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.00 Total: -42.84 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.42 Total: -12.12 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.29 -7.80 -40.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225776188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.230 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds