Wall clock time and date at job start Mon Mar 30 2020 01:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38161 * 119.99938 * 2 1 4 4 C 1.50697 * 119.99927 * 0.04189 * 3 2 1 5 5 C 1.38671 * 120.00256 * 180.02562 * 3 2 1 6 6 O 1.35982 * 120.00391 * 179.97438 * 5 3 2 7 7 C 1.42892 * 117.00216 * 185.72952 * 6 5 3 8 8 H 1.09000 * 110.64036 * 32.94743 * 7 6 5 9 9 C 1.55157 * 110.71949 * 156.08968 * 7 6 5 10 10 C 1.54913 * 101.58028 * 154.04501 * 9 7 6 11 11 N 1.47424 * 104.83216 * 322.99147 * 10 9 7 12 12 C 1.36944 * 125.64768 * 204.09609 * 11 10 9 13 13 H 1.08000 * 120.00088 * 6.55999 * 12 11 10 14 14 C 1.38811 * 119.99603 * 186.56100 * 12 11 10 15 15 N 1.31614 * 120.00231 * 7.41867 * 14 12 11 16 16 Si 1.86807 * 119.99696 * 187.41843 * 14 12 11 17 17 H 1.48502 * 109.46750 * 265.01816 * 16 14 12 18 18 H 1.48498 * 109.46894 * 25.01287 * 16 14 12 19 19 H 1.48493 * 109.46954 * 145.01803 * 16 14 12 20 20 C 1.47024 * 108.70580 * 24.35578 * 11 10 9 21 21 C 1.38729 * 119.99746 * 0.27031 * 5 3 2 22 22 C 1.38109 * 119.99910 * 359.45571 * 21 5 3 23 23 C 1.38669 * 120.00494 * 180.02562 * 2 1 3 24 24 O 1.35989 * 119.99945 * 359.96070 * 23 2 1 25 25 H 1.08991 * 109.46874 * 90.00255 * 1 2 3 26 26 H 1.09000 * 109.46645 * 210.00021 * 1 2 3 27 27 H 1.09003 * 109.47300 * 329.99686 * 1 2 3 28 28 H 1.08999 * 109.47492 * 269.98536 * 4 3 2 29 29 H 1.09001 * 109.47215 * 29.97986 * 4 3 2 30 30 H 1.08999 * 109.47517 * 149.97883 * 4 3 2 31 31 H 1.09002 * 111.00739 * 35.97325 * 9 7 6 32 32 H 1.08993 * 111.00717 * 272.11318 * 9 7 6 33 33 H 1.08997 * 110.36641 * 204.15699 * 10 9 7 34 34 H 1.08994 * 110.46468 * 81.88033 * 10 9 7 35 35 H 0.97003 * 119.99696 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.88064 * 118.12678 * 20 11 10 37 37 H 1.09000 * 109.88022 * 239.29814 * 20 11 10 38 38 H 1.08000 * 119.99410 * 179.70438 * 21 5 3 39 39 H 1.07995 * 119.99716 * 180.27655 * 22 21 5 40 40 H 0.96698 * 114.00362 * 89.98996 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1965 0.0000 4 6 1.4443 2.5016 0.0010 5 6 3.5845 1.1966 -0.0005 6 8 4.2644 2.3742 -0.0011 7 6 5.6859 2.3026 -0.1287 8 1 5.9734 1.4571 -0.7536 9 6 6.2528 3.6277 -0.7032 10 6 7.6964 3.6178 -0.1412 11 7 7.5717 3.0399 1.2093 12 6 8.4422 3.2414 2.2471 13 1 9.2490 3.9521 2.1450 14 6 8.2875 2.5322 3.4303 15 7 7.3990 1.5641 3.5059 16 14 9.3404 2.9518 4.9152 17 1 10.5266 2.0590 4.9489 18 1 9.7870 4.3649 4.8219 19 1 8.5447 2.7648 6.1549 20 6 6.3614 2.2065 1.2556 21 6 4.2782 -0.0048 -0.0067 22 6 3.5877 -1.2009 -0.0010 23 6 2.2005 -1.2008 -0.0005 24 8 1.5206 -2.3786 -0.0003 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 1.2622 2.8168 -1.0264 29 1 0.4920 2.3710 0.5150 30 1 2.0335 3.2610 0.5150 31 1 5.6943 4.4861 -0.3299 32 1 6.2578 3.6107 -1.7930 33 1 8.0885 4.6332 -0.0846 34 1 8.3425 2.9966 -0.7614 35 1 7.2913 1.0683 4.3327 36 1 6.6317 1.1720 1.4674 37 1 5.6837 2.5795 2.0235 38 1 5.3582 -0.0047 -0.0120 39 1 4.1277 -2.1361 -0.0013 40 1 1.3233 -2.7191 -0.8835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225776188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:35 Heat of formation + Delta-G solvation = -54.241859 kcal Electronic energy + Delta-G solvation = -21794.099017 eV Core-core repulsion = 18574.128572 eV Total energy + Delta-G solvation = -3219.970445 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.56736 -39.97803 -38.30592 -36.87468 -34.38019 -34.29866 -31.64994 -30.68404 -29.29069 -28.06461 -27.29353 -26.44487 -23.23015 -22.66418 -22.03319 -21.07615 -19.03317 -18.89684 -18.81973 -17.65096 -17.13026 -16.38546 -16.15668 -15.79791 -15.51172 -15.00361 -14.58990 -14.42342 -14.31829 -14.09219 -13.95450 -13.66959 -13.61640 -13.38588 -12.98075 -12.81377 -12.76350 -12.72159 -12.50409 -12.27525 -12.24859 -11.99630 -11.85277 -11.60517 -11.28598 -11.19482 -10.79336 -9.62730 -8.97799 -8.89721 -7.88651 -5.28445 0.26129 0.32978 1.43263 1.45583 1.55102 2.18274 2.47836 2.58745 3.29301 3.32655 3.57051 3.72775 3.82257 3.89692 3.94719 4.04563 4.11429 4.26650 4.39276 4.50608 4.60902 4.66603 4.76429 4.81553 4.85644 4.93018 4.93664 4.95925 5.13071 5.19702 5.27831 5.32420 5.35973 5.42761 5.44042 5.55967 5.62060 5.80007 6.12612 6.45851 6.92267 7.01471 7.70104 8.33865 9.19927 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021388 B = 0.004654 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.831844 B = 6014.747272 C = 6590.877071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.081 4.081 3 C -0.120 4.120 4 C -0.102 4.102 5 C 0.109 3.891 6 O -0.308 6.308 7 C 0.067 3.933 8 H 0.086 0.914 9 C -0.109 4.109 10 C 0.127 3.873 11 N -0.626 5.626 12 C -0.245 4.245 13 H 0.089 0.911 14 C -0.067 4.067 15 N -0.952 5.952 16 Si 0.980 3.020 17 H -0.284 1.284 18 H -0.265 1.265 19 H -0.297 1.297 20 C 0.175 3.825 21 C -0.204 4.204 22 C -0.115 4.115 23 C 0.062 3.938 24 O -0.498 6.498 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.059 0.941 34 H 0.035 0.965 35 H 0.246 0.754 36 H 0.028 0.972 37 H -0.006 1.006 38 H 0.122 0.878 39 H 0.139 0.861 40 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.226 -2.547 -12.713 18.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.082 4.082 3 C -0.120 4.120 4 C -0.158 4.158 5 C 0.063 3.937 6 O -0.221 6.221 7 C 0.010 3.990 8 H 0.104 0.896 9 C -0.147 4.147 10 C 0.002 3.998 11 N -0.354 5.354 12 C -0.374 4.374 13 H 0.107 0.893 14 C -0.260 4.260 15 N -0.600 5.600 16 Si 0.808 3.192 17 H -0.210 1.210 18 H -0.189 1.189 19 H -0.223 1.223 20 C 0.049 3.951 21 C -0.223 4.223 22 C -0.134 4.134 23 C 0.018 3.982 24 O -0.310 6.310 25 H 0.110 0.890 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.130 0.870 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.013 0.987 38 H 0.139 0.861 39 H 0.157 0.843 40 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -13.231 -2.341 -11.909 17.954 hybrid contribution 1.145 -0.430 0.804 1.464 sum -12.086 -2.771 -11.104 16.645 Atomic orbital electron populations 1.20799 0.87921 1.03846 1.03801 1.20151 0.98209 0.90560 0.99242 1.19284 0.89664 0.97210 1.05880 1.20683 0.99674 0.92238 1.03200 1.19168 0.92146 0.85015 0.97327 1.86058 1.20315 1.28137 1.87586 1.23702 0.77494 1.00503 0.97330 0.89588 1.22800 0.95142 0.95289 1.01424 1.21832 0.95071 0.97703 0.85192 1.44694 1.25594 1.56142 1.08983 1.19528 1.07473 1.18354 0.92059 0.89276 1.25732 1.00956 0.97899 1.01445 1.70182 1.39038 1.24400 1.26412 0.85040 0.77492 0.78314 0.78376 1.21040 1.18909 1.22342 1.21259 0.87173 0.94689 0.92012 1.21244 1.00433 0.92458 1.08142 1.21322 0.94132 0.98029 0.99900 1.18119 0.89293 0.85626 1.05205 1.84798 1.75909 1.35257 1.35037 0.88966 0.90693 0.90080 0.89743 0.89348 0.92885 0.90579 0.87040 0.92286 0.94683 0.94482 0.95417 0.98742 0.86054 0.84294 0.73806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.92 9.38 71.24 0.67 -1.25 16 2 C -0.08 -2.11 5.89 -19.78 -0.12 -2.23 16 3 C -0.12 -3.59 5.89 -19.78 -0.12 -3.71 16 4 C -0.10 -2.48 9.38 71.24 0.67 -1.81 16 5 C 0.11 3.90 6.65 22.49 0.15 4.05 16 6 O -0.31 -11.89 8.92 -93.34 -0.83 -12.72 16 7 C 0.07 2.63 2.73 31.79 0.09 2.71 16 8 H 0.09 3.14 6.25 -2.39 -0.01 3.13 16 9 C -0.11 -3.66 6.81 31.99 0.22 -3.44 16 10 C 0.13 5.04 7.23 86.86 0.63 5.67 16 11 N -0.63 -33.01 3.39 -691.95 -2.35 -35.36 16 12 C -0.25 -14.01 10.26 84.03 0.86 -13.15 16 13 H 0.09 4.78 7.84 -2.91 -0.02 4.75 16 14 C -0.07 -3.93 5.45 84.86 0.46 -3.47 16 15 N -0.95 -59.47 10.48 21.65 0.23 -59.25 16 16 Si 0.98 46.71 29.56 68.60 2.03 48.74 16 17 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 18 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 20 C 0.17 9.07 4.99 86.73 0.43 9.50 16 21 C -0.20 -7.23 8.90 22.36 0.20 -7.03 16 22 C -0.12 -3.53 9.98 22.35 0.22 -3.30 16 23 C 0.06 1.69 6.67 22.49 0.15 1.84 16 24 O -0.50 -10.86 12.54 -93.42 -1.17 -12.03 16 25 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.07 1.32 7.53 -2.39 -0.02 1.30 16 27 H 0.08 1.31 5.95 -2.39 -0.01 1.29 16 28 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.09 1.72 5.95 -2.39 -0.01 1.70 16 30 H 0.05 1.51 7.53 -2.39 -0.02 1.49 16 31 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 36 H 0.03 1.62 6.66 -2.39 -0.02 1.61 16 37 H -0.01 -0.34 7.83 -2.39 -0.02 -0.36 16 38 H 0.12 4.58 5.61 -2.91 -0.02 4.56 16 39 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 40 H 0.40 4.51 9.06 -74.06 -0.67 3.84 16 Total: -1.00 -73.18 321.85 2.80 -70.38 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.39 Total: 15.86 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: 4.52 Total: -15.61 kcal Atomic # 7 Polarization: -92.49 SS G_CDS: -2.12 Total: -94.61 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -2.00 Total: -24.76 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -73.18 2.80 -70.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225776188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.135 kcal (2) G-P(sol) polarization free energy of solvation -73.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds