Wall clock time and date at job start Mon Mar 30 2020 01:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35982 * 116.99496 * 2 1 4 4 C 1.38716 * 120.00521 * 0.02562 * 3 2 1 5 5 C 1.38114 * 119.99844 * 179.70527 * 4 3 2 6 6 C 1.38720 * 119.99896 * 0.55833 * 5 4 3 7 7 O 1.35986 * 119.99480 * 179.72330 * 6 5 4 8 8 C 1.42895 * 117.00457 * 354.63743 * 7 6 5 9 9 H 1.09004 * 110.78146 * 321.88512 * 8 7 6 10 10 C 1.55152 * 110.72333 * 198.63880 * 8 7 6 11 11 C 1.55130 * 101.48537 * 205.97064 * 10 8 7 12 12 N 1.47418 * 104.72318 * 37.29692 * 11 10 8 13 13 C 1.36933 * 125.64960 * 155.81884 * 12 11 10 14 14 H 1.08003 * 120.00075 * 179.69331 * 13 12 11 15 15 C 1.38816 * 120.00269 * 359.95998 * 13 12 11 16 16 N 1.31617 * 119.99557 * 359.73186 * 15 13 12 17 17 Si 1.86793 * 120.00487 * 179.72312 * 15 13 12 18 18 H 1.48502 * 109.47066 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47050 * 120.00360 * 17 15 13 20 20 H 1.48492 * 109.47511 * 240.00418 * 17 15 13 21 21 C 1.47024 * 108.70273 * 335.54965 * 12 11 10 22 22 C 1.38670 * 119.99892 * 359.44555 * 6 5 4 23 23 C 1.50702 * 119.99646 * 180.25616 * 22 6 5 24 24 C 1.38155 * 120.00353 * 0.27751 * 22 6 5 25 25 H 1.08999 * 109.46771 * 300.00341 * 1 2 3 26 26 H 1.08994 * 109.47173 * 60.00408 * 1 2 3 27 27 H 1.09000 * 109.46973 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99867 * 0.02562 * 4 3 2 29 29 H 1.08001 * 119.99687 * 180.30316 * 5 4 3 30 30 H 1.08998 * 111.00042 * 324.21178 * 10 8 7 31 31 H 1.09001 * 111.00302 * 88.02417 * 10 8 7 32 32 H 1.09001 * 110.49931 * 278.44841 * 11 10 8 33 33 H 1.08999 * 110.34191 * 156.05847 * 11 10 8 34 34 H 0.97001 * 120.00382 * 179.97438 * 16 15 13 35 35 H 1.09006 * 109.87933 * 120.70540 * 21 12 11 36 36 H 1.09001 * 109.88410 * 241.71623 * 21 12 11 37 37 H 1.09000 * 109.47487 * 90.00168 * 23 22 6 38 38 H 1.09004 * 109.46779 * 209.99897 * 23 22 6 39 39 H 1.08998 * 109.47517 * 329.99851 * 23 22 6 40 40 H 1.07999 * 119.99957 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2908 2.3750 0.0005 5 6 1.9179 3.6056 0.0067 6 6 3.3032 3.6782 0.0006 7 8 3.9204 4.8899 0.0010 8 6 3.0850 6.0437 -0.1112 9 1 2.2610 5.8590 -0.8005 10 6 3.9108 7.2779 -0.5609 11 6 3.0677 8.4425 0.0217 12 7 2.5780 7.9388 1.3177 13 6 2.2026 8.7116 2.3840 14 1 1.8514 8.2447 3.2923 15 6 2.2682 10.0954 2.2956 16 7 2.6962 10.6645 1.1887 17 14 1.7488 11.1498 3.7473 18 1 1.3106 10.2739 4.8636 19 1 2.8969 11.9803 4.1917 20 1 0.6267 12.0334 3.3411 21 6 2.5532 6.4695 1.2735 22 6 4.0584 2.5152 0.0000 23 6 5.5633 2.5941 -0.0007 24 6 3.4312 1.2842 -0.0004 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2123 2.3185 0.0014 29 1 1.3296 4.5113 0.0121 30 1 4.9100 7.2588 -0.1259 31 1 3.9612 7.3392 -1.6480 32 1 2.2302 8.6739 -0.6365 33 1 3.6907 9.3248 0.1685 34 1 2.7418 11.6315 1.1266 35 1 3.1935 6.0642 2.0571 36 1 1.5323 6.1117 1.4072 37 1 5.9268 2.6129 1.0267 38 1 5.9725 1.7244 -0.5150 39 1 5.8794 3.5020 -0.5146 40 1 4.0194 0.3785 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227136363.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:04 Heat of formation + Delta-G solvation = -22.185513 kcal Electronic energy + Delta-G solvation = -21434.441193 eV Core-core repulsion = 18215.860816 eV Total energy + Delta-G solvation = -3218.580378 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.46181 -39.09675 -37.21920 -35.69885 -32.65155 -32.20622 -29.93109 -29.19643 -27.45056 -27.13015 -26.53015 -24.58913 -22.59669 -21.28115 -20.20208 -20.08908 -17.95214 -17.44790 -17.08972 -16.39960 -15.81480 -15.27432 -14.78818 -14.62570 -14.28756 -13.92736 -13.87526 -13.24846 -13.10349 -12.82611 -12.59875 -12.42200 -12.17890 -11.89936 -11.88208 -11.74259 -11.48952 -11.04468 -10.89174 -10.83061 -10.73145 -10.38287 -10.14269 -9.90603 -9.83449 -9.62306 -8.81627 -8.71121 -7.56336 -6.90558 -5.70669 -3.13044 1.28246 1.55955 3.22403 3.37586 3.42977 3.45585 3.55631 3.76283 4.45566 4.75231 4.79803 4.99107 5.00862 5.12370 5.19383 5.27893 5.31590 5.32655 5.44687 5.51135 5.56961 5.64208 5.71412 5.75958 5.89810 5.96833 6.23203 6.30871 6.34982 6.41207 6.42294 6.47859 6.59465 6.63166 6.76340 7.33694 7.41015 7.57437 7.73591 7.81967 8.29216 9.16063 9.76358 10.39646 11.33617 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025663 B = 0.003881 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.808073 B = 7213.294088 C = 7823.824909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.083 3.917 4 C -0.171 4.171 5 C -0.165 4.165 6 C 0.107 3.893 7 O -0.301 6.301 8 C 0.070 3.930 9 H 0.074 0.926 10 C -0.134 4.134 11 C 0.152 3.848 12 N -0.601 5.601 13 C -0.223 4.223 14 H 0.079 0.921 15 C -0.010 4.010 16 N -0.923 5.923 17 Si 0.916 3.084 18 H -0.280 1.280 19 H -0.289 1.289 20 H -0.290 1.290 21 C 0.118 3.882 22 C -0.085 4.085 23 C -0.104 4.104 24 C -0.117 4.117 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.127 0.873 29 H 0.136 0.864 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.016 0.984 33 H 0.114 0.886 34 H 0.253 0.747 35 H 0.035 0.965 36 H 0.024 0.976 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.492 -18.016 -5.040 18.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.038 3.962 4 C -0.190 4.190 5 C -0.183 4.183 6 C 0.061 3.939 7 O -0.214 6.214 8 C 0.014 3.986 9 H 0.092 0.908 10 C -0.173 4.173 11 C 0.027 3.973 12 N -0.329 5.329 13 C -0.351 4.351 14 H 0.097 0.903 15 C -0.206 4.206 16 N -0.571 5.571 17 Si 0.747 3.253 18 H -0.205 1.205 19 H -0.216 1.216 20 H -0.217 1.217 21 C -0.008 4.008 22 C -0.086 4.086 23 C -0.160 4.160 24 C -0.135 4.135 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.114 0.886 28 H 0.145 0.855 29 H 0.153 0.847 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.034 0.966 33 H 0.132 0.868 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.042 0.958 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.223 -17.933 -4.956 18.606 hybrid contribution -1.054 0.715 0.722 1.464 sum -1.277 -17.217 -4.235 17.776 Atomic orbital electron populations 1.22994 0.78834 1.03523 1.01302 1.86037 1.20975 1.26937 1.89632 1.18806 0.92173 0.84021 1.01159 1.20994 0.99811 0.91696 1.06518 1.21223 0.93694 0.98560 1.04868 1.18793 0.90746 0.85957 0.98415 1.86156 1.36071 1.11659 1.87525 1.23620 0.93529 0.83433 0.98028 0.90823 1.23215 1.00245 0.93910 0.99897 1.22050 0.95489 0.94865 0.84853 1.44394 1.77003 0.98607 1.12847 1.19137 1.36177 0.87907 0.91916 0.90334 1.24796 1.01692 0.96384 0.97705 1.69763 1.52773 1.09193 1.25405 0.85965 0.77782 0.80288 0.81273 1.20491 1.21625 1.21689 1.21741 0.97513 0.87431 0.94161 1.19029 0.96370 0.89661 1.03513 1.20608 0.90069 1.02814 1.02525 1.20035 0.91174 0.97199 1.05137 0.92788 0.92857 0.88557 0.85505 0.84677 0.90754 0.91553 0.96585 0.86817 0.93643 0.94695 0.95815 0.91161 0.91811 0.90710 0.84912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.86 10.50 -19.68 -0.21 -4.07 16 3 C 0.08 1.10 6.68 -39.24 -0.26 0.84 16 4 C -0.17 -2.27 9.03 -39.45 -0.36 -2.63 16 5 C -0.16 -2.47 8.77 -39.45 -0.35 -2.82 16 6 C 0.11 1.70 6.60 -39.24 -0.26 1.44 16 7 O -0.30 -5.30 8.92 -19.70 -0.18 -5.47 16 8 C 0.07 1.30 2.76 -24.90 -0.07 1.24 16 9 H 0.07 1.27 6.59 -51.93 -0.34 0.93 16 10 C -0.13 -2.60 6.82 -24.47 -0.17 -2.76 16 11 C 0.15 3.67 5.90 -2.41 -0.01 3.66 16 12 N -0.60 -15.59 3.39 -169.93 -0.58 -16.16 16 13 C -0.22 -6.26 10.27 -15.06 -0.15 -6.42 16 14 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 15 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 16 N -0.92 -26.64 10.09 55.49 0.56 -26.08 16 17 Si 0.92 22.00 29.55 -169.99 -5.02 16.98 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 C 0.12 2.56 6.51 -3.06 -0.02 2.54 16 22 C -0.08 -1.19 5.89 -104.49 -0.62 -1.81 16 23 C -0.10 -1.22 9.79 36.01 0.35 -0.87 16 24 C -0.12 -1.52 9.64 -39.45 -0.38 -1.90 16 25 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 26 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.13 1.39 6.29 -52.49 -0.33 1.06 16 29 H 0.14 2.04 5.32 -52.49 -0.28 1.76 16 30 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.11 3.07 5.86 -51.93 -0.30 2.76 16 34 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.04 0.79 8.06 -51.93 -0.42 0.37 16 36 H 0.02 0.51 7.44 -51.93 -0.39 0.12 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 39 H 0.07 0.94 7.53 -51.93 -0.39 0.55 16 40 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 323.13 15.07 4.87 4.87 Total: -1.00 -30.75 323.13 -7.70 -38.45 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.75 Total: 0.15 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -1.40 Total: -8.66 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: -0.02 Total: -42.25 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.38 Total: -9.54 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.75 -7.70 -38.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227136363.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.260 kcal (2) G-P(sol) polarization free energy of solvation -30.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds