Wall clock time and date at job start Mon Mar 30 2020 02:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.47319 * 180.02562 * 4 3 2 6 6 C 1.35900 * 117.00172 * 179.97438 * 5 4 3 7 7 C 1.38746 * 120.05467 * 359.72752 * 6 5 4 8 8 C 1.38131 * 119.94707 * 179.69741 * 7 6 5 9 9 C 1.38290 * 120.04957 * 0.59675 * 8 7 6 10 10 C 1.38250 * 120.11062 * 359.67603 * 9 8 7 11 11 C 1.50699 * 119.96557 * 180.02562 * 10 9 8 12 12 N 1.46497 * 109.47121 * 269.97217 * 11 10 9 13 13 C 1.34783 * 120.00182 * 180.02562 * 12 11 10 14 14 O 1.21687 * 119.99355 * 0.02562 * 13 12 11 15 15 C 1.46368 * 120.00144 * 180.02562 * 13 12 11 16 16 H 1.08004 * 120.00322 * 0.02562 * 15 13 12 17 17 C 1.40051 * 120.00022 * 180.02562 * 15 13 12 18 18 N 1.30665 * 119.99694 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99894 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47258 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47134 * 120.00194 * 19 17 15 22 22 H 1.48503 * 109.47012 * 239.99615 * 19 17 15 23 23 C 1.38162 * 120.05723 * 0.02573 * 10 9 8 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 300.00216 * 1 2 3 26 26 H 1.09001 * 109.47289 * 60.00300 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99783 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99974 * 2 1 3 29 29 H 1.09002 * 109.47103 * 59.99753 * 3 2 1 30 30 H 1.08998 * 109.46862 * 300.00565 * 3 2 1 31 31 H 1.09002 * 109.47153 * 59.99783 * 4 3 2 32 32 H 1.09001 * 109.46832 * 299.99974 * 4 3 2 33 33 H 1.08010 * 120.02919 * 359.97292 * 7 6 5 34 34 H 1.07993 * 119.97567 * 180.29505 * 8 7 6 35 35 H 1.07997 * 119.94208 * 179.70200 * 9 8 7 36 36 H 1.08993 * 109.47352 * 29.97953 * 11 10 9 37 37 H 1.09001 * 109.46764 * 149.97894 * 11 10 9 38 38 H 0.97001 * 120.00247 * 0.02562 * 12 11 10 39 39 H 0.97003 * 119.99647 * 180.02562 * 18 17 15 40 40 H 1.07998 * 120.02891 * 180.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 8 4.0464 2.7896 0.0012 6 6 5.3937 2.9677 0.0024 7 6 6.2399 1.8682 0.0087 8 6 7.6090 2.0517 0.0035 9 6 8.1363 3.3301 0.0046 10 6 7.2952 4.4273 0.0041 11 6 7.8733 5.8190 0.0047 12 7 8.0590 6.2700 1.3860 13 6 8.5666 7.4940 1.6329 14 8 8.8702 8.2244 0.7082 15 6 8.7526 7.9444 3.0131 16 1 8.4835 7.2959 3.8337 17 6 9.2796 9.2164 3.2695 18 7 9.6056 10.0008 2.2767 19 14 9.5177 9.7910 5.0310 20 1 9.0749 8.7238 5.9639 21 1 10.9536 10.0891 5.2646 22 1 8.7132 11.0172 5.2646 23 6 5.9251 4.2490 0.0030 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9562 -0.8899 31 1 3.9337 0.9284 -0.8891 32 1 3.9329 0.9287 0.8909 33 1 5.8285 0.8695 0.0131 34 1 8.2680 1.1962 0.0036 35 1 9.2069 3.4716 0.0054 36 1 8.8351 5.8131 -0.5081 37 1 7.1914 6.4959 -0.5100 38 1 7.8166 5.6879 2.1231 39 1 9.9710 10.8817 2.4543 40 1 5.2685 5.1064 0.0022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011993174.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:17 Heat of formation + Delta-G solvation = -74.934848 kcal Electronic energy + Delta-G solvation = -20160.684059 eV Core-core repulsion = 16939.816298 eV Total energy + Delta-G solvation = -3220.867760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.17067 -38.07971 -36.92324 -35.41431 -33.52425 -32.32691 -30.91379 -30.32504 -28.98672 -26.83660 -25.06181 -23.93082 -22.49645 -21.50048 -20.78406 -19.63151 -17.96089 -16.94334 -16.59733 -16.10813 -15.86950 -15.30694 -15.02495 -14.54285 -14.26716 -14.07823 -13.90311 -13.47591 -13.08572 -13.02476 -12.83534 -12.39404 -12.18281 -11.97036 -11.62370 -11.50294 -11.36028 -11.26635 -11.17324 -11.08428 -10.87501 -10.78267 -10.64970 -10.41796 -10.17066 -8.84269 -8.83492 -8.14185 -7.56416 -7.47919 -6.16015 -4.61150 1.37533 1.54560 3.05377 3.15164 3.23235 3.28047 3.81681 4.15137 4.49119 4.51075 4.61513 4.66432 4.83557 4.86651 4.88263 5.01832 5.13897 5.16351 5.26140 5.35841 5.39481 5.44793 5.47206 5.57282 5.65501 5.72041 5.81456 5.82320 5.91078 6.03474 6.30424 6.34224 6.45115 6.50771 6.81318 6.92042 7.43940 7.46440 7.96094 8.10902 8.36290 9.05259 9.56318 10.62455 10.80907 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024159 B = 0.002859 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.693744 B = 9789.850773 C =10389.811615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.121 4.121 4 C 0.060 3.940 5 O -0.316 6.316 6 C 0.125 3.875 7 C -0.213 4.213 8 C -0.084 4.084 9 C -0.141 4.141 10 C -0.047 4.047 11 C 0.169 3.831 12 N -0.762 5.762 13 C 0.555 3.445 14 O -0.581 6.581 15 C -0.543 4.543 16 H 0.068 0.932 17 C 0.087 3.913 18 N -0.768 5.768 19 Si 0.908 3.092 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.136 4.136 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.382 0.618 39 H 0.267 0.733 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.498 -20.567 -3.579 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.158 4.158 4 C -0.016 4.016 5 O -0.230 6.230 6 C 0.080 3.920 7 C -0.232 4.232 8 C -0.102 4.102 9 C -0.160 4.160 10 C -0.048 4.048 11 C 0.044 3.956 12 N -0.418 5.418 13 C 0.359 3.641 14 O -0.464 6.464 15 C -0.580 4.580 16 H 0.086 0.914 17 C -0.133 4.133 18 N -0.397 5.397 19 Si 0.733 3.267 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.155 4.155 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.213 0.787 39 H 0.078 0.922 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.353 -19.685 -4.346 23.643 hybrid contribution 0.097 -0.319 1.202 1.247 sum -12.256 -20.003 -3.145 23.669 Atomic orbital electron populations 1.21753 0.95198 1.01812 1.02186 1.21431 0.96431 0.95684 1.02348 1.21585 0.92669 0.97665 1.03901 1.22796 0.95265 0.82252 1.01240 1.86055 1.19294 1.28820 1.88873 1.18936 0.81973 0.94094 0.97022 1.21158 0.94473 0.97637 1.09966 1.20891 0.94184 0.97157 0.98016 1.21063 1.00137 0.91803 1.02973 1.20020 0.92283 0.96211 0.96278 1.19829 0.99379 0.88636 0.87712 1.46189 1.71881 1.19384 1.04345 1.18259 0.76709 0.78563 0.90605 1.90599 1.54852 1.54376 1.46547 1.20910 1.45107 1.01078 0.90947 0.91365 1.25717 0.93247 0.96163 0.98157 1.70034 1.30642 1.07286 1.31753 0.86314 0.78323 0.79077 0.83018 1.18783 1.20178 1.20173 1.20396 0.94847 0.94814 1.05427 0.92525 0.92482 0.92518 0.91733 0.91689 0.90708 0.90773 0.92227 0.92167 0.85961 0.85966 0.85648 0.92194 0.92309 0.78699 0.92178 0.85065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.12 -0.71 5.93 -26.74 -0.16 -0.87 16 3 C -0.12 -0.93 5.58 -26.74 -0.15 -1.07 16 4 C 0.06 0.55 4.74 37.16 0.18 0.73 16 5 O -0.32 -4.15 10.14 -19.43 -0.20 -4.34 16 6 C 0.12 1.75 6.69 -39.22 -0.26 1.49 16 7 C -0.21 -2.60 9.04 -39.43 -0.36 -2.96 16 8 C -0.08 -1.04 10.04 -39.60 -0.40 -1.43 16 9 C -0.14 -2.03 9.70 -39.56 -0.38 -2.41 16 10 C -0.05 -0.77 5.25 -104.65 -0.55 -1.32 16 11 C 0.17 3.38 5.80 -5.20 -0.03 3.35 16 12 N -0.76 -17.60 5.54 -62.91 -0.35 -17.95 16 13 C 0.55 16.09 7.75 -12.99 -0.10 15.99 16 14 O -0.58 -19.12 15.02 5.20 0.08 -19.04 16 15 C -0.54 -15.61 9.54 -35.63 -0.34 -15.95 16 16 H 0.07 1.81 7.85 -52.48 -0.41 1.39 16 17 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 18 N -0.77 -23.34 11.83 55.55 0.66 -22.68 16 19 Si 0.91 20.40 29.56 -169.99 -5.02 15.37 16 20 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 C -0.14 -2.12 9.64 -39.43 -0.38 -2.50 16 24 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.49 7.68 -51.93 -0.40 0.09 16 32 H 0.06 0.51 7.65 -51.93 -0.40 0.11 16 33 H 0.12 1.17 6.30 -52.48 -0.33 0.84 16 34 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 35 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 37 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 38 H 0.38 7.98 8.44 -40.82 -0.34 7.63 16 39 H 0.27 7.33 8.29 -40.82 -0.34 7.00 16 40 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 342.06 15.07 5.15 5.15 Total: -1.00 -34.63 342.06 -8.42 -43.05 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.08 Total: 5.51 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -2.66 Total: -5.08 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.31 Total: -40.63 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.12 Total: -23.39 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.63 -8.42 -43.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011993174.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.882 kcal (2) G-P(sol) polarization free energy of solvation -34.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds