Wall clock time and date at job start Mon Mar 30 2020 02:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.47319 * 180.02562 * 4 3 2 6 6 C 1.35900 * 117.00172 * 179.97438 * 5 4 3 7 7 C 1.38746 * 120.05467 * 359.72752 * 6 5 4 8 8 C 1.38131 * 119.94707 * 179.69741 * 7 6 5 9 9 C 1.38290 * 120.04957 * 0.59675 * 8 7 6 10 10 C 1.38250 * 120.11062 * 359.67603 * 9 8 7 11 11 C 1.50699 * 119.96557 * 180.02562 * 10 9 8 12 12 N 1.46497 * 109.47121 * 269.97217 * 11 10 9 13 13 C 1.34783 * 120.00182 * 180.02562 * 12 11 10 14 14 O 1.21687 * 119.99355 * 0.02562 * 13 12 11 15 15 C 1.46368 * 120.00144 * 180.02562 * 13 12 11 16 16 H 1.08004 * 120.00322 * 0.02562 * 15 13 12 17 17 C 1.40051 * 120.00022 * 180.02562 * 15 13 12 18 18 N 1.30665 * 119.99694 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99894 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47258 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47134 * 120.00194 * 19 17 15 22 22 H 1.48503 * 109.47012 * 239.99615 * 19 17 15 23 23 C 1.38162 * 120.05723 * 0.02573 * 10 9 8 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 300.00216 * 1 2 3 26 26 H 1.09001 * 109.47289 * 60.00300 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99783 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99974 * 2 1 3 29 29 H 1.09002 * 109.47103 * 59.99753 * 3 2 1 30 30 H 1.08998 * 109.46862 * 300.00565 * 3 2 1 31 31 H 1.09002 * 109.47153 * 59.99783 * 4 3 2 32 32 H 1.09001 * 109.46832 * 299.99974 * 4 3 2 33 33 H 1.08010 * 120.02919 * 359.97292 * 7 6 5 34 34 H 1.07993 * 119.97567 * 180.29505 * 8 7 6 35 35 H 1.07997 * 119.94208 * 179.70200 * 9 8 7 36 36 H 1.08993 * 109.47352 * 29.97953 * 11 10 9 37 37 H 1.09001 * 109.46764 * 149.97894 * 11 10 9 38 38 H 0.97001 * 120.00247 * 0.02562 * 12 11 10 39 39 H 0.97003 * 119.99647 * 180.02562 * 18 17 15 40 40 H 1.07998 * 120.02891 * 180.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 8 4.0464 2.7896 0.0012 6 6 5.3937 2.9677 0.0024 7 6 6.2399 1.8682 0.0087 8 6 7.6090 2.0517 0.0035 9 6 8.1363 3.3301 0.0046 10 6 7.2952 4.4273 0.0041 11 6 7.8733 5.8190 0.0047 12 7 8.0590 6.2700 1.3860 13 6 8.5666 7.4940 1.6329 14 8 8.8702 8.2244 0.7082 15 6 8.7526 7.9444 3.0131 16 1 8.4835 7.2959 3.8337 17 6 9.2796 9.2164 3.2695 18 7 9.6056 10.0008 2.2767 19 14 9.5177 9.7910 5.0310 20 1 9.0749 8.7238 5.9639 21 1 10.9536 10.0891 5.2646 22 1 8.7132 11.0172 5.2646 23 6 5.9251 4.2490 0.0030 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9562 -0.8899 31 1 3.9337 0.9284 -0.8891 32 1 3.9329 0.9287 0.8909 33 1 5.8285 0.8695 0.0131 34 1 8.2680 1.1962 0.0036 35 1 9.2069 3.4716 0.0054 36 1 8.8351 5.8131 -0.5081 37 1 7.1914 6.4959 -0.5100 38 1 7.8166 5.6879 2.1231 39 1 9.9710 10.8817 2.4543 40 1 5.2685 5.1064 0.0022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000011993174.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:17 Heat of formation + Delta-G solvation = -97.658515 kcal Electronic energy + Delta-G solvation = -20161.669431 eV Core-core repulsion = 16939.816298 eV Total energy + Delta-G solvation = -3221.853133 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.21380 -39.59293 -38.58389 -36.05369 -35.30388 -34.47553 -32.18392 -31.45677 -29.78426 -28.79129 -26.64326 -24.76692 -23.55723 -22.25465 -21.88819 -21.58446 -19.51956 -18.51233 -17.45526 -17.31814 -17.12801 -16.96302 -16.27345 -15.95374 -15.63990 -15.47731 -14.87540 -14.64393 -14.39841 -14.27336 -13.96764 -13.75039 -13.31542 -13.17067 -13.00490 -12.81082 -12.73173 -12.64629 -12.51024 -12.12455 -11.98797 -11.97375 -11.82796 -11.67337 -11.44310 -10.95431 -10.13684 -9.73724 -9.53283 -9.18422 -8.29963 -6.87061 0.24233 0.45723 1.40380 1.40667 1.59042 2.17165 2.25105 2.45609 2.67759 3.33482 3.59368 3.69844 3.83739 3.92341 3.96718 4.11210 4.13744 4.28049 4.35502 4.36605 4.40091 4.50502 4.63934 4.72726 4.80809 4.85653 4.91581 5.00284 5.05716 5.21760 5.30033 5.31446 5.31995 5.43562 5.43738 5.65337 5.78006 5.85843 6.16524 6.24631 6.46833 6.85436 7.50888 8.46401 8.65819 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024159 B = 0.002859 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.693744 B = 9789.850773 C =10389.811615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.118 4.118 4 C 0.052 3.948 5 O -0.335 6.335 6 C 0.122 3.878 7 C -0.201 4.201 8 C -0.073 4.073 9 C -0.148 4.148 10 C -0.060 4.060 11 C 0.175 3.825 12 N -0.749 5.749 13 C 0.537 3.463 14 O -0.632 6.632 15 C -0.571 4.571 16 H 0.087 0.913 17 C 0.027 3.973 18 N -0.822 5.822 19 Si 1.001 2.999 20 H -0.247 1.247 21 H -0.267 1.267 22 H -0.268 1.268 23 C -0.155 4.155 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.129 0.871 36 H 0.049 0.951 37 H 0.039 0.961 38 H 0.394 0.606 39 H 0.275 0.725 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.902 -23.442 -1.950 26.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.156 4.156 4 C -0.023 4.023 5 O -0.249 6.249 6 C 0.076 3.924 7 C -0.220 4.220 8 C -0.091 4.091 9 C -0.167 4.167 10 C -0.061 4.061 11 C 0.051 3.949 12 N -0.403 5.403 13 C 0.342 3.658 14 O -0.520 6.520 15 C -0.608 4.608 16 H 0.105 0.895 17 C -0.188 4.188 18 N -0.451 5.451 19 Si 0.820 3.180 20 H -0.170 1.170 21 H -0.191 1.191 22 H -0.193 1.193 23 C -0.174 4.174 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.175 0.825 34 H 0.177 0.823 35 H 0.147 0.853 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.227 0.773 39 H 0.085 0.915 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.791 -22.629 -2.718 26.136 hybrid contribution 0.130 0.454 0.617 0.777 sum -12.661 -22.175 -2.101 25.621 Atomic orbital electron populations 1.21771 0.95039 1.02360 1.01966 1.21415 0.96535 0.94327 1.03141 1.21598 0.91880 0.98909 1.03223 1.23114 0.95974 0.80619 1.02565 1.86047 1.18769 1.31450 1.88683 1.18967 0.82855 0.93847 0.96696 1.21549 0.94222 0.98523 1.07659 1.21265 0.94792 0.97111 0.95885 1.21179 1.00141 0.92261 1.03135 1.19599 0.92827 0.94421 0.99235 1.19764 0.98645 0.90971 0.85564 1.45860 1.70268 1.17962 1.06241 1.18669 0.76722 0.79747 0.90701 1.90550 1.57201 1.56340 1.47881 1.21438 1.45680 1.02285 0.91361 0.89500 1.27022 0.91979 0.95821 1.04019 1.70196 1.31512 1.08113 1.35292 0.84926 0.78668 0.78800 0.75581 1.17041 1.19141 1.19297 1.20309 0.94461 0.95667 1.06948 0.91588 0.92809 0.92717 0.90837 0.90947 0.91551 0.91401 0.90659 0.90830 0.82531 0.82255 0.85302 0.93263 0.94227 0.77300 0.91483 0.86605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 71.98 0.71 -0.70 16 2 C -0.12 -1.10 5.93 30.59 0.18 -0.92 16 3 C -0.12 -1.63 5.58 30.59 0.17 -1.46 16 4 C 0.05 0.82 4.74 71.98 0.34 1.16 16 5 O -0.33 -8.37 10.14 -92.43 -0.94 -9.31 16 6 C 0.12 3.24 6.69 22.50 0.15 3.39 16 7 C -0.20 -4.20 9.04 22.37 0.20 -4.00 16 8 C -0.07 -1.53 10.04 22.26 0.22 -1.31 16 9 C -0.15 -4.08 9.70 22.29 0.22 -3.86 16 10 C -0.06 -2.00 5.25 -19.88 -0.10 -2.10 16 11 C 0.17 7.38 5.80 85.63 0.50 7.87 16 12 N -0.75 -35.91 5.54 -471.16 -2.61 -38.52 16 13 C 0.54 32.42 7.75 86.36 0.67 33.09 16 14 O -0.63 -43.83 15.02 -4.31 -0.06 -43.89 16 15 C -0.57 -33.32 9.54 24.83 0.24 -33.09 16 16 H 0.09 4.57 7.85 -2.91 -0.02 4.55 16 17 C 0.03 1.51 5.50 85.31 0.47 1.98 16 18 N -0.82 -51.32 11.83 21.84 0.26 -51.07 16 19 Si 1.00 41.71 29.56 68.60 2.03 43.73 16 20 H -0.25 -9.54 7.11 99.48 0.71 -8.84 16 21 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 22 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 23 C -0.15 -4.93 9.64 22.36 0.22 -4.71 16 24 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 25 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 0.97 7.68 -2.39 -0.02 0.95 16 32 H 0.07 0.98 7.65 -2.39 -0.02 0.96 16 33 H 0.16 2.20 6.30 -2.91 -0.02 2.18 16 34 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 35 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 36 H 0.05 2.16 8.08 -2.39 -0.02 2.14 16 37 H 0.04 1.79 8.08 -2.39 -0.02 1.77 16 38 H 0.39 16.78 8.44 -92.71 -0.78 16.00 16 39 H 0.28 15.46 8.29 -92.71 -0.77 14.69 16 40 H 0.12 3.92 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -78.29 342.06 3.10 -75.19 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: 0.25 Total: 28.51 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 4.18 Total: -4.65 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -2.35 Total: -89.59 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -1.00 Total: -53.20 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -78.29 3.10 -75.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011993174.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.472 kcal (2) G-P(sol) polarization free energy of solvation -78.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds