Wall clock time and date at job start Mon Mar 30 2020 01:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47215 * 2 1 4 4 C 1.52999 * 109.47220 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.46927 * 305.00307 * 4 3 2 6 6 C 1.53000 * 109.47350 * 64.99894 * 4 3 2 7 7 C 1.50702 * 109.47289 * 185.00242 * 4 3 2 8 8 O 1.21291 * 119.99999 * 359.97438 * 7 4 3 9 9 N 1.34774 * 119.99926 * 179.97438 * 7 4 3 10 10 C 1.39992 * 119.99720 * 175.48227 * 9 7 4 11 11 C 1.38921 * 120.00000 * 215.12602 * 10 9 7 12 12 C 1.38001 * 119.99816 * 180.02562 * 11 10 9 13 13 C 1.38913 * 120.00423 * 359.97438 * 12 11 10 14 14 O 1.35771 * 120.00148 * 180.02562 * 13 12 11 15 15 C 1.34817 * 116.99964 * 354.64684 * 14 13 12 16 16 H 1.07995 * 120.00095 * 5.04775 * 15 14 13 17 17 C 1.38630 * 120.00036 * 185.03916 * 15 14 13 18 18 N 1.31578 * 119.99853 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00211 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47190 * 89.99868 * 19 17 15 21 21 H 1.48500 * 109.47324 * 210.00000 * 19 17 15 22 22 H 1.48500 * 109.46548 * 329.99966 * 19 17 15 23 23 C 1.38906 * 119.99540 * 0.27347 * 13 12 11 24 24 C 1.37997 * 120.00528 * 359.45327 * 23 13 12 25 25 H 1.09007 * 109.46866 * 299.99516 * 1 2 3 26 26 H 1.09000 * 109.47564 * 59.99859 * 1 2 3 27 27 H 1.09005 * 109.47091 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46866 * 240.00484 * 2 1 3 29 29 H 1.09003 * 109.47329 * 120.00606 * 2 1 3 30 30 H 1.08998 * 109.46974 * 60.00184 * 3 2 1 31 31 H 1.09003 * 109.47466 * 300.00522 * 3 2 1 32 32 H 1.08995 * 109.47079 * 300.00152 * 6 4 3 33 33 H 1.09002 * 109.47004 * 59.99869 * 6 4 3 34 34 H 1.08994 * 109.47475 * 179.97438 * 6 4 3 35 35 H 0.96996 * 120.00007 * 355.48943 * 9 7 4 36 36 H 1.07996 * 120.00442 * 359.97438 * 11 10 9 37 37 H 1.08003 * 120.00451 * 179.97438 * 12 11 10 38 38 H 0.96998 * 119.99639 * 180.02562 * 18 17 15 39 39 H 1.08001 * 119.99615 * 179.72490 * 23 13 12 40 40 H 1.08006 * 120.00392 * 180.27505 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8528 0.8410 6 6 4.0795 0.8330 -1.3083 7 6 4.0724 2.8579 0.1232 8 8 3.2843 3.7763 0.2036 9 7 5.3975 3.1031 0.1447 10 6 5.8649 4.4225 0.1643 11 6 7.0341 4.7553 -0.5079 12 6 7.4951 6.0559 -0.4881 13 6 6.7897 7.0325 0.2036 14 8 7.2430 8.3121 0.2226 15 6 8.4386 8.5466 -0.3545 16 1 8.9520 7.7519 -0.8753 17 6 9.0091 9.8078 -0.2795 18 7 8.3839 10.7760 0.3554 19 14 10.6655 10.1329 -1.0797 20 1 10.4591 10.5815 -2.4802 21 1 11.3825 11.1897 -0.3219 22 1 11.4715 8.8857 -1.0731 23 6 5.6233 6.6986 0.8800 24 6 5.1592 5.3993 0.8556 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.7161 -0.1907 -1.3978 33 1 3.7158 1.4226 -2.1499 34 1 5.1694 0.8334 -1.3089 35 1 6.0273 2.3654 0.1465 36 1 7.5829 3.9961 -1.0453 37 1 8.4044 6.3147 -1.0103 38 1 8.7829 11.6585 0.4075 39 1 5.0773 7.4570 1.4215 40 1 4.2499 5.1407 1.3779 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036667511.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:08 Heat of formation + Delta-G solvation = -57.083497 kcal Electronic energy + Delta-G solvation = -20665.356596 eV Core-core repulsion = 17445.262928 eV Total energy + Delta-G solvation = -3220.093668 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.29929 -38.75974 -36.83780 -35.84717 -34.00764 -32.33118 -31.96522 -30.20164 -27.92181 -26.83852 -25.41106 -24.12747 -22.27474 -21.68974 -20.70426 -19.74846 -18.03518 -17.37289 -16.95643 -16.24765 -15.77781 -14.99263 -14.57013 -14.55397 -14.32689 -13.95930 -13.67312 -13.50373 -13.28051 -12.82542 -12.74782 -12.52572 -12.38025 -12.11442 -11.83938 -11.56572 -11.55099 -11.40812 -11.16027 -11.05405 -10.99829 -10.76020 -10.69935 -10.45528 -9.63209 -9.48859 -9.21853 -8.70470 -8.19260 -6.91821 -6.43577 -4.01788 2.11352 2.22351 2.87200 3.13389 3.14021 3.18792 3.34193 3.97469 4.50118 4.52730 4.61682 4.69552 4.93325 5.01172 5.05931 5.11096 5.27032 5.34184 5.41974 5.55053 5.57202 5.58303 5.65417 5.73310 5.81115 5.84454 5.93070 6.09369 6.16032 6.19594 6.24987 6.30888 6.82388 6.87186 7.00868 7.18104 7.23392 7.42233 7.74293 7.80840 8.00922 8.41376 9.01690 9.72508 10.74432 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.049624 B = 0.002938 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.106113 B = 9527.401309 C = 9929.241319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.101 4.101 4 C -0.109 4.109 5 H 0.095 0.905 6 C -0.145 4.145 7 C 0.508 3.492 8 O -0.527 6.527 9 N -0.661 5.661 10 C 0.034 3.966 11 C -0.090 4.090 12 C -0.220 4.220 13 C 0.147 3.853 14 O -0.177 6.177 15 C -0.392 4.392 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.179 4.179 24 C -0.068 4.068 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.401 0.599 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.270 0.730 39 H 0.120 0.880 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.134 -21.140 -1.484 22.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.139 4.139 4 C -0.131 4.131 5 H 0.113 0.887 6 C -0.203 4.203 7 C 0.295 3.705 8 O -0.403 6.403 9 N -0.305 5.305 10 C -0.058 4.058 11 C -0.111 4.111 12 C -0.240 4.240 13 C 0.093 3.907 14 O -0.080 6.080 15 C -0.468 4.468 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.497 5.497 19 Si 0.766 3.234 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.199 4.199 24 C -0.088 4.088 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.235 0.765 36 H 0.128 0.872 37 H 0.149 0.851 38 H 0.080 0.920 39 H 0.138 0.862 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.773 -20.031 -1.295 21.525 hybrid contribution 1.286 -0.225 -0.478 1.390 sum -6.487 -20.256 -1.773 21.343 Atomic orbital electron populations 1.21765 0.95792 1.01386 1.02082 1.21600 0.96023 0.96718 1.01944 1.21437 0.92199 0.96539 1.03754 1.21326 0.97948 0.93380 1.00410 0.88673 1.21830 1.01142 1.01246 0.96065 1.20722 0.82151 0.91353 0.76302 1.90695 1.55174 1.46079 1.48313 1.43258 1.07047 1.06971 1.73249 1.17290 0.98485 0.84079 1.05977 1.20481 0.95976 0.96138 0.98474 1.20972 1.03593 0.92571 1.06871 1.19418 0.92873 0.85415 0.92994 1.83990 1.35071 1.20367 1.68603 1.21310 0.94399 0.97485 1.33591 0.89095 1.25293 0.99590 0.94608 0.97101 1.70051 1.38175 1.02269 1.39223 0.85711 0.80164 0.78668 0.78860 1.19901 1.20270 1.19229 1.20163 0.97791 0.96346 1.05622 1.20747 0.99016 0.91709 0.97294 0.92658 0.92659 0.92901 0.91797 0.92090 0.91004 0.91195 0.91280 0.91952 0.92182 0.76494 0.87229 0.85139 0.92026 0.86157 0.85344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.13 -0.90 5.69 -26.73 -0.15 -1.05 16 3 C -0.10 -0.97 4.03 -26.73 -0.11 -1.08 16 4 C -0.11 -1.02 2.72 -91.77 -0.25 -1.27 16 5 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 6 C -0.15 -1.10 8.85 37.16 0.33 -0.78 16 7 C 0.51 7.10 7.00 -10.99 -0.08 7.02 16 8 O -0.53 -9.58 13.36 5.55 0.07 -9.51 16 9 N -0.66 -9.06 5.20 -9.82 -0.05 -9.11 16 10 C 0.03 0.61 6.30 -83.63 -0.53 0.09 16 11 C -0.09 -1.64 9.96 -39.42 -0.39 -2.04 16 12 C -0.22 -4.78 9.16 -39.42 -0.36 -5.14 16 13 C 0.15 3.62 6.65 -39.08 -0.26 3.36 16 14 O -0.18 -5.11 9.75 0.02 0.00 -5.11 16 15 C -0.39 -10.98 9.48 30.88 0.29 -10.68 16 16 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 18 N -0.86 -25.47 13.67 55.48 0.76 -24.72 16 19 Si 0.94 20.52 29.55 -169.99 -5.02 15.50 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 C -0.18 -4.03 9.98 -39.42 -0.39 -4.42 16 24 C -0.07 -1.37 8.69 -39.42 -0.34 -1.71 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.79 7.96 -51.93 -0.41 0.38 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.41 6.56 -51.93 -0.34 0.06 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 35 H 0.40 4.01 8.38 -40.82 -0.34 3.67 16 36 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.13 2.79 5.63 -52.48 -0.30 2.50 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.12 2.63 8.06 -52.49 -0.42 2.20 16 40 H 0.13 2.54 6.22 -52.48 -0.33 2.22 16 LS Contribution 332.38 15.07 5.01 5.01 Total: -1.00 -32.76 332.38 -6.87 -39.63 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.67 Total: 5.76 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -1.97 Total: -17.45 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.71 Total: -33.83 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.07 Total: -14.62 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.76 -6.87 -39.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036667511.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.449 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds